Lecture 5 Flashcards

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1
Q

Operon

A

A cluster of 2 or more genes that share an upstream control (regulatory) region and a termination sequence. Co-transcribe genes.

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2
Q

Trip Operon

A

Response to Environmental stimuli

E. coli can synthesize most molecules needed for growth

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3
Q

Repressible Operon

A

Something is added or accumulates (Trp) that turns off transcription

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4
Q

Inducible genes

A

Genes get “turned on” or activated when conditions change

Example:
E. coli prefers glucose but in glucose-free conditions, it can metabolize lactose
-but first, it needs to make genes that can metabolize lactose

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5
Q

Inducible Operon—Lac Operon

A

Default is off
-When lactose is added, it binds to repressor and pushes it off allow transcription to occur

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6
Q

Catabolism repression

A

Catabolite activator protein (CAP)

Two mechanisms:
-Lactose present, but no glucose
-Lactose present+glucose present

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7
Q

Inducible promoter

A

-E. coli prefers glucose
-when glucose is gone:
•lactose inactivates the repressor
•cAMP increases to activate transcription

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8
Q

Operon vs regulon

A

Regulon—when more than one Operon is under control of the same regulatory protein, the Operon are referred to as regulons

-Stress response
-Pathogenesis
-Phosphate deprivation
-Presence of maltose

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9
Q

Translation

A

Protein synthesis

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10
Q

sRNA

A

Small RNA

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11
Q

Mutation

A

Change in the DNA base sequence (nucleotides) of genome

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12
Q

Spontaneous mutation

A

Errors in DNA replication

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13
Q

Missense mutation

A

Change in amino acid

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14
Q

Nonsense mutation

A

Stop codon

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15
Q

Silent mutation

A

No amino acid change (wobble)

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16
Q

Frameshift mutation

A

Insertion or deletion of one or more nucleotide pairs

17
Q

Spontaneous mutation rate

A

1 error every 10^9 replicated base pairs=1 error in every 10^6 replicated genes

18
Q

Mutagens

A

Increase to 1 error in every 10^3 replicated gene

19
Q

Chemical mutagen examples

A

-Nitrous acid (HNO2)
-Nitrosamine (HN2O2)

20
Q

Physical mutagen examples

A

-UV light
•absorbed by DNA
-ionizing radiation
•causes breaks in DNA
•for cancer treatment + nuclear bombs
•nasty radiation

21
Q

Clastogens

A

-Lead to Genomic instability
Examples:
Acridine yellow, arsenic, benzene

22
Q

Three types of DNA repair

A
  1. SOS repair
  2. Photolyases
  3. Nucleotide excision repair
23
Q

SOS repair

A

Initiates regulon activity where over 40 genes are involved in different types of repair, growth arrest, & apoptosis.

24
Q

Photolyases

A

Separate thymine dimers

25
Q

Nucleotide excision repair

A

Removes and replaces a single base

26
Q

Positive (direct) selection

A

Detects mutant cells because they grow or appear different
•Ames test

27
Q

Negative (indirect) selection

A

Detects mutant cells because they do not grow
•replica plating

28
Q

Ames test

A

-for chemical mutagens
-to see if more grow due to mutagen
-test on media lacking histidine

29
Q

Why eat liver extract in Ames test?

A

Because of enzymes and mimics metabolism of mutagens

30
Q

Auxotroph

A

A mutant strain with a new nutritional requirement compared to parental/wildtype strain

31
Q

Why are mutants (and mutagens) useful?

A

-make attenuated (less virulent) strains of microbes for vaccines
-cancer treatment kills quickly diving cells

32
Q

Replica plating

A

-identification of antibiotic resistant strains of bacteria
-identification of auxotrophs

33
Q

Vertical gene transfer

A

A parent cell divides through binary fission to make 2 daughter cells

34
Q

Horizontal gene transfer

A

The transfer of genes between cells of the same generation

35
Q

Horizontal transformation

A