Lecture 4 Flashcards

1
Q

Eukaryotic flagella

A

-Back-and-forth motion
-Microtubules
-Protein subunit is tubulin

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2
Q

Archaea flagella

A

Some archaea have archaella which are composed of protein subunits known as archaellins

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3
Q

Flagella details

A

-Anchored to the cell wall and membrane by the basal body consisting of ring proteins
•Gram- have 4
•Gram+ have 2

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4
Q

Flagellar anatomy

A

-The hook
-Basal body
-Ring structures
-Mot proteins

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5
Q

The hook

A

Rotating part of the flagella

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6
Q

Basal body

A

Internal part of the flagella

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7
Q

Ring structures

A

Ring proteins attached to flagella on membrane

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8
Q

Mot proteins

A

The Mot complex in the inner cell membrane controls the flow of protons to make ATP

-Movement of flagella propel by movement of ions(+) (proton motive force PMF) down gradient through Mot proteins (no energy-gradient)

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9
Q

Gliding motility

A

-Movement without propulsive structures like flagella
-Gliding bacteria are filamentous or rod-shaped

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10
Q

Two types of gliding mobility

A
  1. Ratcheting
  2. Slime jet
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11
Q

Intracellular actin based movement

A

L. Monocytogenes can move from macrophage to macrophage without exposure to the rest of the immune system by pushing the membrane of one cell into the next.

-process of crossing from macrophage through phagocytosis then destruction of vacuole and release into cell
-moves from cell to cell without exposure to extracellular space

Ex. Listeria monocytogenes

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12
Q

Intracellular Actin-Based Movement mechanism factors

A

-actin
-VASP
-Bacterial ActA

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13
Q

Actin

A

Actin is the most abundant protein in the cytoplasm of mammalian cells (10-20%) and involved in cell motility, cell division, vesicle movement, cell shape

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14
Q

VASP

A

VASP interacts with the fast (barbed end) of actin filament to promote elongation

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15
Q

Bacterial ActA

A

Binds VASP and is connected to the expanding end of actin

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16
Q

Axial filament

A

-Also called endoflagella
-embedded between the cell wall and outer membrane
-rotates like a corkscrew

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17
Q

Filamentous appendages

A

-flagella
-fimbriae
-pili

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18
Q

Fimbriae (short attachment pili, common pili)

A

-short bristle-like and numerous
-made of fibrillin
-fimbriae are filamentous proteins with adhesive tips that allow for attachment to surfaces and other cells, colonization, and resistance flushing
-Act as virulence factors in Escherichia, Staphylococcus, and Streptococcus

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19
Q

Pilus (pili)

A

-few in number (1-10)
-longer than fimbriae
-made of pilin
-sex pili: facilitate transfer of DNA FROM ONE CELL TO ANOTHER (conjugation)

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20
Q

Eukaryote vs prokaryote rRNA count

A

Eukaryote-18 rRNA
Prokaryote-16 rRNA

21
Q

Ribosome

A

For protein synthesis (creation)

22
Q

Bacteria vs Archaea genome size

A

Bacteria 0.6-8 million base pairs
Archaea 0.5-5.6 million base pairs

E. coli—5 million nucleotides
Human —3.3 billion nucleotides

23
Q

Bacterial genetics

A

-DNA genome
•Single, circular chromosome
*some exceptions like vibrio cholera
-Haploid
-No introns (very rare)
-may have a plasmid

24
Q

Plasmids

A

An extra chromosomal self-replicating piece of DNA that carries gene for a variety of functions but is not essential for cell growth

25
Types of plasmids
-dissimilation plasmids -Col plasmids -R (resistance) factors -F (fertility factors -Virulence factors
26
Dissimilation plasmids
Encodes catabolic enzymes
27
Col plasmids
Encodes bacteriocins, proteins that can kill other bacteria
28
R (resistance) factors
Encode antibiotic resistance
29
F (fertility) factor
Encodes sex pilus for conjugation
30
Virulence factors
Encodes genes that increase pathogenic features
31
Genetics—flow of genetic information
The central dogma DNA-replication RNA-transcription Protein-translation
32
DNA key factor
DNA is the blueprint for a cell’s proteins and is obtained from a parent cell or from another cell
33
Replication of bacterial DNA
-Bacteria are haploid -One chromosome -Replication begins at a single origin of replication (ORI) -Bidirectional, semiconservative replication. 5’—3’
34
The process of DNA replication
1. Topoisomerase (Gyrase) 2. Helicase 3. Single stranded binding proteins 4. Primase •DNA polymerase III 5. DNA polymerase I 6. Ligase
35
Topoisomerase (Gyrase)
Untwists DNA
36
Helicase (DnaA)
Binds to Ori and unzips double helix of DNA at the replication fork to expose short single stranded region
37
Single stranded binding proteins
Bind to stabilize and prevent reforming double helix
38
Primase •DNA polymerase III
Loads a primer (short stretch of RNA) complementary to DNA and DNA polymerase III attaches to synthesize new DNA 5’—3’
39
DNA polymerase I
Removes RNA primers and replaced with DNA
40
Ligase
Seals nicks between fragments
41
The large replication complex
Replisome
42
Drug targets
-Fluoroquinolones •class of antibiotics •Inhibit bacterial topoisomerase (gyrases)=inhibit replication
43
Binary fission
Asexual reproduction where one parent cell divides into 2 daughter cells
44
Expression of genes starts with transcription
1. Initiation 2. Elongation 3. Termination
45
Initiation
RNA polymerase binds to Pribnow box in the promoter region along with a protein called sigma factor. This is called the holoenzyme
46
Elongation (part 1)
-Transcription factors help recruit or stabilize the holoenzyme (RNA polymerase & sigma) and drive transcription •Transcription Repressor proteins are transcription factors that reduce RNA transcription -RNA polymerase binds to DNA unwinds it (It has its own Helicase activity) -Bacteria have one RNA polymerase, while eukaryotic cells have 3 types
47
Elongation (part 2)
-Cab transcribe either: •A single gene •Co-transcribed genes—2 or more genes sharing a promoter and termination site *Polycistronic mRNA gets cleaved into multiple mRNA products
48
Termination
-Terminator sequences within the DNA signal the RNA polymerase to stop -One mechanism: RNA stem-loop followed by a run of adenines