JC88 (Microbiology) - Antibiotics resistnace Flashcards
Methods of identifying microbes
Traditional: Subculture and biochemical test (long turnover time)
New: Matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry (MS) (short turnover time)
3 examples of penicillins
Penicillin G^ (strep)
Cloxacillin (staph)
Piperacillin (pseudomonas)
5 examples of cephalosporins (1 by each generation)
1GC: cephalexin
2GC: cefuroxime (+ gram neg)
3GC: ceftriaxone (++ Gram neg), ceftazidime (non- fermenters), cefoxitin
4GC: cefepime (+ Gram pos)
Anti-MRSA cephalosporins: ceftaroline
4 examples of Penicillin+ Beta-lactamase inhibitor
Augmentin (amoxicillin + clavulanate)
Timentin (ticarcillin + clavulanate)
Tazocin (piperacillin + tazobactam)
Unasym (ampicillin + sulbactam)
2 examples of carbapenems
Imipenem
Meropenem (broadest Gram pos/neg spectrum)
9 classes of non-beta lactams
Fluoroquinolones Aminoglycosides Macrolides Tetracyclines Glycylcyclines Glycopeptides Oxazolindinone Linocosamide Rifampicin Metronidazole
Examples of fluoroquinolones, aminoglycosides
Fluoroquinolones
Levofloxacin
Ciprofloxacin
Moxifloxacin (better Gram pos)
Aminoglycosides
Gentamicin
Amikacin (part of combination/synergy)
Examples of macrolides and tetracyclines and glycopeptides
Macrolides
Erythromycin
Clarithromycin
Azithropmycin
Tetracyclines
Doxycycline
Minocycline
Glycopeptides
Vancomycin
Teicoplanin (Gram pos)
Compare intrinsic and acquired resistance
Intrinsic:
- a trait of the bacterial genus/ species, all members
in the genus/ species are resistant
Acquired:
- Mutational or Horizontal gene transfer through conjugation (plasmid transfer)
- Conjugation mechanisms: Integron and Transposons
Describe horizontal gene transfer by integron and transposons mechanism
Integron: consists of integrase gene: can integrate,
express, and exchange specific DNA elements
Transposon: “jumping genes” with ability to change their genomic/ plasmid positions before horizontal transfer
Name a method to quantify antimicrobial resistance
Antibiogram: table summarizing the % of individual bacterial pathogens susceptible to different antimicrobial agents in local area
e.g. 51% of S. aureus = MRSA
List 3 different calculation methods for antibiogram
Sample size cut-off for antibiogram calculation?
“All isolates” – calculations include all isolates of a given species equally, even those of patients with multiple isolates
“First isolate” per patient – calculations include the
results of only the first isolate of a given species recovered from each patient during the investigated time interval
First isolate per episode (most useful, worse case scenario) - calculations include only the most resistant interpretation observed for each separate antimicrobial agent, tested among all isolates of a given species from an individual patient.
Cut-off: should not calculate if no. <30
Name a laboratory test for testing inducible antibiotic resistance
D test
Culture organism and place antibiotic tablets in two quadrants
Observe for zone of bacteria killing by antibiotic tablets
If killing zone flattens on one side, antibiotic resistance is developed
List the leading anti-microbial resistant bacterial pathogens and their resistance pattern (5)
MRSA (methicillin-resistant Staphylococcus aureus) - Total beta-lactams failure
VRE (vancomycin-resistant enterococcus) - Vancomycin failure
ESBL (extended-spectrum beta-lactamases) - Cephalosporin failure
CRE (carbapenem-resistant Enterobacteriaceae)- Total beta- lactam failure
CRAB (carbapenem-resistant Acinetobacter baumanii)
Antibiotics of choice for top 5 leading anti-microbial resistant bacteria pathogens
MRSA - Vancomycin, (linezolid, daptomycin)
VRE - Linezolid, daptomycin
ESBL - Carbapenem