Human Pedigrees Flashcards

1
Q

Name the 6 types of Mendelian inheritance

A
Autosomal dominant,
Autosomal recessive,
X linked dominant,
X linked recessive,
Y linked
Mitochondrial inheritance
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2
Q

Name a mutation which causes achondroplasia

A

Single base mutation in the fibroblast growth receptor 3 on chromosome 4 at 1138

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3
Q

What is autosomal recessive

A

On non sex chromosomes, need both copies of the allele to have the condition. Not expressed in every generation more in consanguineous marriages

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4
Q

What is an example of a autosomal recessive condition

A

Cystic fibrosis, freq 1/2000 causes infertility in males and low fertility in females, causes a build up of thick sticky mucus in the lungs and intestines
Is a mutation in the cystic fibrosis transmembrane conductance regulator gene encoding for membrane bound chlorine channels

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5
Q

What is X-linked Dominant?

A

Seen in every generation women more likely to suffer than men

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6
Q

Example of an X-linked dominant condition

A

Hypophosphatemia with vitamin D resistant rickets (HPDR1)
Freq 1/20000
Causes growth retardation, childhood rickets, reduced serum phosphate female hetrozygotes phenotype variable lyonization

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7
Q

What is X-linked recessive

A

Mainly males effected unless have two X chromosomes with the allele

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8
Q

Example of a X-linked recessive condition

A

Duchenne muscular dystrophy (DMD) mainly affects males, severe progressive proximal muscle weakness die at 20 years

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9
Q

Complications of X-linked inheritance

A

Male lethality if passed onto from the mother so may die in Utero half is passed on to their daughters
Eg incontinentia pigmenti

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10
Q

Name 5 repeat expansion diseases

A
Fragile X syndrome
SBMA
Huntingtons disease
Friedreich ataxia 
Myotonic dystrophy 1
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11
Q

What causes myotonic dystrophy (AD)?

A

An epansion of the triplet repeat CTG in the 3’ untranslated region of the gene on 19q.
No of repeats increases through generations thus increasing severity

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12
Q

What is a polymorphic trait?

A

Proteins which have little variation such as blood groups and antigens

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13
Q

What is genetic mapping used for?

A

Measuring the recombination between genes that cause a disease/trait and polymorphisms within the genome

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14
Q

How many SNPs can be expected per generation?

A

6-60 mutations

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15
Q

What are minisatellites used for?

A

DNA fingerprinting

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16
Q

How can SNPs be analysed

A

Restriction fragment length polymorphisms

17
Q

What can be used to analyse STRs?

A

PCR

18
Q

What is the maximum recombination frequency?

A

50%

19
Q

How do you calculate RF

A

Recombinants/total progeny

20
Q

What does one RF unit represent?

A

1%=1cM (centi Morgan) =1x10^6 np

21
Q

How do you calculate a lodscore?

A

[(1-theta)^5 theta^1] / [(1-0.5)^5 0.5^1]

22
Q

What does the maximal lodscore represent?

A

The most probable position of the disease locus

23
Q

What are the 5 Lodscore limitations?

A

Requires genetic model for mode of inheritance
Errors in data scoring, entry, misdiagnosis
Limitations in families that can be analysed
Not useful if there is locus heterogeneity
Limits in resolution

24
Q

What is a haplotype?

A

A particular combination of alleles at closely linked loci that are inherited together in families

25
Q

What type of disease can use haplotypes to track them?

A

Ones with locus heterogeneity eg deafness

26
Q

What is linkage disequilibrium?

A

Non-random association of alleles at linked loci in a population

27
Q

4 Factors that influence linkage disequilibrium

A

Recombination or gene conversion breakdown
Recurrent mutation
Population dynamics eg genetic drift and migration
Natural selection

28
Q

Define autosomal dominant

A

Seen in every generation, non sex bias you only need one allele to have the condition, mutations tend to occur in germline cells usually in sperm due to the volumes produced