Human Microbiome Flashcards
there are ____ more microbial cells than human cells
10x
microbes like to attach to surfaces exposed to the _______
environment
gastrointestinal microbiota:
Bacteroidetes, firmicutes, proteobacteria
gastrointestinal microbiota: each person has a unique community of these, but no on has the same _______ (not even twins)
microbiome
the microbiome of the gastrointestinal microbiota trains the __________ __________ to discover invaders
immune system
enterotype is the set of _____ in the specific individual
microbes
the microbiomes are influenced by _______ activities
daily
gastrointestinal microbiota: stomach
helicobacter pylori, gastric lumen, mucus layer
helicobacter pylori: causes _____ in the stomach
ulcers
helicobacter pylori: colonize ____ of world population
50%
helicobacter pylori can cause ______ in people
cancer
inflammation causes ______ to a specific area
damage
gastric lumen ph
1-2
the further distal you go in the small intestine, the less _____ is there
oxygen
the deeper you go in the small intestine the more _____ you find surviving
microbes
small intestine:
enterococci & lactobacilli
large intestine: bacteria / gram
10^-10 & 10 ^-11
large intestine: mostly ______
anaerobes
large intestine: some facultative aerobes _____
E. coli
large intestine: archaea __________
methanogens
large intestine: ________
fermentation
neuromodulatory:
changes things in the nervous system ( turns things off & on)
oral microbiota:
firmicutes, streptococcumutans, streptococcus
streptococcumucans
degrade the teeths surface
oral microbiota:
aerobic, anaerobic, facultative
upper respiratory tract microbiota:
highly colonized, Staphylococcus aureus (nose), streptococci, gram-negative cocci
lower respiratory tract microbiota:
not colonized, reduced airflow, immune cells, mucocilliary escalator
genitourinary tract microbiota:
upper urinary, distal urinary
upper urinary tract:
normally sterile: kidneys, ureters, bladder (flow of urine, immune cells)
distal urinary tract: gm negative
female 4 cm, male 20 cm
skin microbiota:
bacteria & yeasts, 10^6 bacteria/cm2, 10^10 ovreall
female genital tract: lots of microorganisms, warm, moist nutrients
lactobacillus, acidophilus, pH ~5
penis microbiota
circumcised & uncircumcised differentiated
skin microbiota:
corynebacterium, proprionibacterium, staphylococcus
skin & mucus membrane:
barriers to infection, competitive exclusion, skin- the outside, mucus membrane- the inside
vaginal birth shares ____ microbiome w mother
72%
c section birth shares ____ microbiome w mother
42%
breast feeding:
contains more lactobacillus & bifidobacterium
by ___, you have an adult-like microbiome
3 years old
microbiome stable:
70% of species retention year to year
bacteriodetes
actinobacteria
as we get old microbiome:
more bacteriodetes, less firmicutes
less overall diversity
dysbiosis:
disruption in homeostasis (perfect mutualism in your micrbobiota & you)
example of dysbiosis:
inflammatory bowel disease
inflammatory bowel disease:
CHRONIC gut inflammation
altered gut microbiota
antibiotics & clostridoides difficile
antibiotic treatment, c. difficile, diarhhea, pesudomembranous colitis
D. dif:
overgrows in colon & produces horrific diarhhea
pseudomembranous colitis
inflammation, perforation, shock, death
obesity:
create volatile fatty acids through fermentation
oral dysbiosis
dental caries & periodontitis
dental caries:
streptococcus mutans, other fermenters
dental caries:
fermentation leads to acid production
decrease in diversity
periodontitis
inflammation, destruction of gums, bone
decrease in diversity
skin dysbiosis
acne
acne
proprionibacterium acnes
vaginal dysbiosis
vaginosis, vaginitis,
vaginosis
odor, discharge
vaginitis
inflammatory infection
vaginal dysbiosis
decrease in lactobacillus, growth of Candida, trichomonas vaginalis
perturbations:
changes; return to homeostasis
probiotics:
live microorganisms confer a health benefit of the host
probiotic
bifidobacterium & lactobacillus
prebiotics
plant nutrients we cannot digest but fermentative gut microbes can
prebiotics
feed the good microbes
insulin
synbiotics
probiotics + prebiotics