Final Exam Flashcards
Dengue virus
type of disease, serotypes, causing agent, prevalence, where its found in the world, s/s, tx, vaccine, dx
- arthropod viral disease
- causes - Aedes aegypti
- # 2 most common arthropod disease after malaria
- “break bone fever”
- don’t have in UT
- emerging threat in Florida
- four distinct serotypes
- DENV-1,2,3,4
- s/s
- asymptomatic to mild flu like symptoms
-
dengue hemorrhagic fever and dengue shock syndromes
- fatality rate 40%
- dx. virus isolation and detect antibodies
- no effective vaccine available
- tx. supportive care
- vector control
how many times more likely are HIV victims to develop active TB?
800 times
two largest known pandemics that were caused by viruses
-
1918 “spanish flu” pandemic
- killed more than 25 million people in one year (3.6% of worlds population)
-
HIV/AIDS
- first recognized in U.S. in early 1980s
- now worldwide pandemic
- devastating Africa
is the home to % of the world’s people living with HIV
Sub-Saharan Africa
68%
hepA vaccine
2 dose series
12-23 mos
aerobes vs anaerobes vs facultative anaerobes (oxygen requirements)
- aerobes - require O2 for metabolism
- anaerobes - do not use O2 for metabolism (some can tolerate it, but others are killed by it)
- facultative anaerobes - grow better in presence of O2, but can grow in its absence
ways microbes are used that are beneficial to society
- exploited to produce foods
- used to make products (drugs, chemicals, biotechnology) and energy sources (biofuels)
- used for bioremediation to clean-up environmental pollutants
Anthrax
type of disease, where it is found, cause, used for what, treatment, varieties,
- soilborne bacterial disease
- cause: Bacillus anthracis (g+ endospore-forming)
- primarily found in grazing animals
- biowarfare
- antibiotics effective against all forms, but early intervention necessary
- vaccine for high risk
-
three varieties:
-
inhalation anthrax (woolsorter’s disease)
- most severe; hazard for people who work with contaminated dead animals; flu-like symptoms
-
cutaneous anthrax
- acquired by contact with wool, hides, leather, hair products
- s/s - small blisters, ulcer
-
gastrointestinal anthrax
- from ingesting under-cooked meat
-
inhalation anthrax (woolsorter’s disease)
- most common in agricultural regions of many countries, but rare in U.S. (sporadic outbreaks)
- vaccination recommended for livestock
- also infected by injecting heroin.. reported in Europe
pneumococcal conjugate (PCV13) vaccine
4 dose series
2 mos
4 mos
6 mos
12-15 mos
1 dose >65 yrs
Onchocerca volvulus
type of disease, transmission, host, s/s
- roundworm disease
- “river blindness”
- transmission: female blackfly
- larvae migrate to biting parts of fly after development
- live near muscles and joints (significant pain)
- produce thousands of larvae daily; adult worms can live up to 15 years in human body
- s/s: corneal inflammation (keratitis), blindness
- humans are only definitive host
trichomoniasis
type of disease, microorganism that causes it, prevalence, where its found in the world, reservoir, s/s, tx, dx, carriers
- sexually transmitted protozoan disease
- cause - Trichomonas vaginalis
- flagellated protozoan
- one of the most common STDs; worldwide
- no cyst stage; cannot survive long outside of host
- human urogenital tract is the only reservoir
- many infected are asymptomatic carriers
- s/s - iching, dysuria, discharge
- tx - oral drugs (tinidazole, metronidazole)
- the most treatable STD
- dx - swab then microscope and look for motility
Group B strep
s/s, prevention
- primary concern for newborns
- early and late onset
- s/s: fever, difficulty feeding and breathing, blue-ish skin, irritable, streptococcal pharyngitis
- prevention:
- test pregnant women (25% carry)
- IV antibiotics during labor
multicellular microbes
- algae
- fungi
antigenic drift vs antigenic shift (influenza)
lice
Dracanulus medinensis
type of disease, worm that causes it, s/s, tx, portal of entry and exit
- roundworm disease caused by guinea worm
- no symptoms for 1 yr, then flu-like
- blister develops and causes burning pain. bursts with temp change of cool water and thousands of larvae release
- portal of entry: drinking water
- tx. is necessary
epidemiologists
challenged to determine why an outbreak of disease occurs at a particular time and/or particular place
Noroviruses (Norwalk and Norwalk-like)
genome type, how contagious is it, where outbreaks occur, morbidity rates, what disease does it cause
- +ssRNA (use directly as mRNA)
- very contagious: ID <10 viral particles
- causes inflamed stomach and intestines
- persists in environment; viruses shed after recovery
- very common (millions of cases in U.S. per year)
- cruise ship outbreaks
- “stomach flu”
- prevent by sanitation
- cause gastroenteritis
- foodborne and waterborne virus
prevention of TB
-
BCG (bacillus Calmette-Guerin) vaccine
- attenuated
- protection rate ~80% children and <50% in adults; not life-long
- gives positive TB skin test
- we don’t use this vaccine
- improve DOTS implementation
- improve social conditions (poverty, water quality, housing)
- improve public health care
bacterial contact diseases (other than STDs)
reservoirs
- reservoir - site in nature in which microbes survive (and possibly multiply) and from which they may be transmitted
- humans are the only known reservoir for pathogens that cause smallpox, gonorrhea, measles, polio
viral genome replication for ssDNA
Molecular HIV Surveillance (MHS)
example of when it was used
- a group of people whose HIV genetic sequence is so similar it implies an epidemiological link among them
- called an HIV cluster
- two persons infected with highly similar HIV strains could be directly linked through transmission, but both could…
- have been infected by a third source OR
- be connected indirectly by 1 or more intermediaries
-
Bexar County, San Antonio, Texas
- cluster 51 - all men, largely hispanic, MSM, and average age of 29
meningococcal vaccine
2 doses
11-12 yrs
16 yrs
La Crosse encephalitis
type of disease, where it occurs in the world, what it can cause
- encephalitis-causing arboviruses
- occurs in upper midwestern U.S. (La Crosse, Wisconsin)
- can cause miscarriages and deformities
indirect transmission
-
indirect transmission - microbes pass from reservoir to intermediate agent to host
- vehicleborne - via food, water, biological products (organs, blood), and fomites
- airborne - aerosols of water or dust (less than 4 µm) that remain airborne for extended periods
-
vectorborne - arthropods (ticks, flies, mosquitoes, lice, fleas) or insects (chagas’ kissing bug)
- mechanical passive transmission on feet; microbes do not invade, multiply, or develop in the vector
- biological vectors - transmission is an active process
pinworms
- life cycle in intestine
- emerge at nighttime to lay eggs (10-15,000)
- intense itching and nightmares
- very infectious
Taeniasis
type of disease, cause, portal of entry, portal of exit, host, s/s, where is it found
- caused by tapeworms -
- Taenia saginata (beef tapeworm) - more symptoms (digestive problems because they are larger in size)
- T. solium (pork tapeworm)
- T. asiatica (Asian tapeworm)
- humans are the only host
- portal of exit: segments in feces (contaminate soil)
- cows and pigs infected after feeding - migrate to striated muscle (cysticercosis)
- portal of entry: consuming raw or undercooked beef or pork
- s/s: mild or nonexistent
- rare in U.S. except where sanitation is poor
Western equine encephalitis
type of disease, where its found in the world, symptoms, mortality, prevalence
- encephalitis-causing arbovirus
- endemic to western half of U.S.
- rarely symptomatic
- can cause severe neurological damage and death (4% mortality rate)
Enterotoxigenic E. coli
symptom, pathotypes, type of disease
- six pathotypes associated with diarrhea
- most common cause of traveler’s diarrhea
- foodborne and waterborne bacterial disease
viral envelopes
which type is more stable in the environment?
-
non-enveloped:“naked” have protein capsid surface
- more stable in the environment
-
enveloped: plasma membrane containing host and viral protein, surrounds the virion as it exits the cell
- enveloped purpose: collect membrane of host cell, not immediately recognized (protection), more prone to break down in environment
- spikes: surface viral proteins used in attachment
diseases spread by anopheles
- malaria
- elephantiasis
Six types of microbes
- bacteria
- viruses
- protozoa
- fungi
- algae (unicellular)
- prions (subcellular; composed entirely of protein)
pandemic
- classification of disease
- epidemics that spread across continents
- i.e. 1918 influenza, HIV/AIDS, malaria
nonspecific immunity
- innate physiological defenses that operate to
- block microbes from getting into body
- eliminate microbes that have gotten into the body
- present since birth
- act against types of microbes, not specific microbes
flu strains that emerged recently
-
bird flu H5N1
- 1997 Hong Kong
- direct bird contact
- high mortality rate
-
swine flu of 2009 (H1N1)
- reassortment of pig, human, bird (antigenic shift)
- reclassified as just another “seasonal” flu
- 2015 huge outbreak in Iowa and Midwest in poultry and wild birds
shingles (herpes zoster)
type of disease, genome type, who does it affect, vaccine, transmission, host
- varicella-zoster (DNA herpes virus)
- airborne viral disease
- occurs after age 45 in some who had chickenpox as a child
- humans are the only host
- transmission: airborne and contact with fluid
- highly contagious
- vaccine -
- SHINGRIX - zoster vaccine recombinant
transmissible spongiform encephalopathies (TSEs) symptoms
- prion disease
- s/s: loss of motor coordination, dementia, other neurological symptoms, death
- autopsy reveals a “sponge-like” brain full of holes
- no cure or treatment
plague
type of disease, causing agent, vector, reservoirs, epidemiology, types (mortality, s/s, transmission)
- arthropod vector disease
- cause - Yersinia pestis
- gram neg. bacillus
- one of the most virulent bacteria known
- killed 1/3 of Europe in 1300s
- used as biological warfare
-
reemerging infection
-
pacific plague focus
- ~50% acquired from visiting campgrounds or recreation sites
-
southwest plague focus
- 80% acquired in peridomestic environments
- sporadic cases due to prairie dogs
-
pacific plague focus
- reservoirs - mammals, rodents
- vector - flea
- types of plague
-
bubonic
- s/s - buboes (swollen lymph nodes)
- can spread and cause hemorrhages
- not normally infectious
- mortality >50%
- s/s - buboes (swollen lymph nodes)
-
pneumonic
- bubonic plague then develop pneumonia
- transmission - airborne
- 100% fatal w/o early tx
- vaccine for high risk; not that effective
-
septicemic
- spreads from lungs to rest of body
- transmission - fecal-oral
- 100% fatal
-
bubonic
food intoxication (food poisoning)
- ingestion of bacterial toxins (with or without microbe being present)
- symptoms appear quickly
- n/v, diarrhea
Nipah and Hendra virus
- Henipavirus
- s/s: fever, headache, enchephalitis, coma
- risk factor: close contact w/ pigs, consuming raw date palm sap, bats
flat worms (digenian flukes) diseases
- schistosomiasis - bilharzia
- opisthorchis sinensis - chinese liver fluke
- paragonimus sp. - the lung fluke
- echinostome (human fluke)
antibody structure
unicellular microbes
- protozoa
- bacteria
how can normal flora be opportunistic pathogens?
slippery see-saw between mutualism to parasitism; people with depressed immune systems are more prone to infections
Thomas Malthus
- 1800s
- preacher who warned that unchecked population growth would lead to faminine
- the “hub” of the problem with population growth is increased tranmission of infectious agents
direct transmission - horizontal transmission
- person-to-person
- touch
- sex
- droplets
- animal bites
which type of viruses are resistant to hand sanitizer?
non-enveloped viruses
humoral (antibody-mediated) immunity
- specific immunity
- triggers antibody production specific for an antigen
- antibodies are produced by activated B lymphocytes with aid of TH cells
- B lymphocytes are “activated” by contact with antigen and TH cells to become antibody-producing plasma cells
- some B cells develop into memory B cells
- all antibodies made by one B cell bind to the same antigen
three main classes of parasites
- protozoa
- helminths
- ectoparasites
zika virus - flavivirus
type of disease, what its associated with, s/s, vaccination, at risk, dx
- arthropod viral disease
- olympics outbreak in Brazil
- largely associated with travel
- can be sexually transmitted
- s/s - usually none or mild
- at risk - pregnant women (microcephaly)
- use protection for 6 mos
- association with Guillain-Barre syndrome (affects nerves)
- dx - blood, urine, history
-
no vaccine available
- mosquito control is critical!
fungi that produces blue cheese
Penicillium rouqueforti
what percentage of human disease are a result of viruses?
85%
4 kinds of viral genomes
- dsDNA
- dsRNA
- ssDNA
- ssRNA
Coccidioidomycosis
type of disease, s/s, dx, tx, incidence, where it is found, at risk
- valley fever
- fungal disease
-
endemic in AZ, CA, NV, NM, UT
- phoenix - 15-30% community acquired pneumonia
- s/s - flu-like
- at risk - travel to endemic states, adults >60 yo, immunocompromised
- dx - history, blood sample, sometimes chest x-ray and biopsy
- tx - usually none, maybe antifungal meds
Hepatitis B virus as an STD
incubation, presentation, prevention, diagnostics, treatment, concentration in various body fluids
- incubation: 60-90 days
- presentation: jaundice
- dx:
- HBsAg
- Anti-HBc
- IgM anti-HBc
- Anti-HBs
- prevention:
- vaccination
- hep B immunoglobulin
- tx:
- interferon
- lamivudine
food poisoning
- food intoxication
- bacteria replicate in food or water and make toxins, which you ingest
- examples: staph. food poisoning, Bacillus cereus, botulism, C. perfringins (70% fatal)
- some self-resolving, others use antitoxin and supportive therapy
bacterial STIs
- chlamydia
- gonorrhea
- syphilis
Rabies Virus
type of disease, virus type, vaccine, forms
- contact viral disease
- formerly known as hydrophobia
- caused by RNA virus
-
vaccine for prevention and early tx
- 5 dose (day 0, 3, 7, 14, 28)
- includes one dose of immunoglobullin
- two lethal forms:
- furious (80%) - involves brain (aggression, foaming at mouth)
- dumb, or paralytic - involves spinal cord (weak limbs, paralysis)
- in the U.S. - bat bites
Botulism
microbe, source, therapy, disease type, s/s
- food intoxication (foodborne and waterborne bacterial disease)
- Clostridium botulinum (g+ spore-forming bacillus) found in soil
- source: improperly canned foods, low acid content foods
- therapy: antitoxin and mechanical ventilation
- s/s: muscle weakness, slurred speech, impaired vision
- botox - removes wrinkles and reduces muscle overactivity
nomenclature for Influenza A (subtypes)
H5N1 “Avian Flu” (2004 Vietnam)
H1N1 “swine flu” of 2009
viral replication release
- mechanisms:
- rupture (lyse) the cell (i.e. phage and some animal viruses)
-
budding or “endocytosis in reverse” (some enveloped viruses)
- gradual and doesn’t kill the cell
types of infectious disease transmission
- person-to-person
- biological vector (mosquito to human)
- zoonotic (animal to human; by consumption or biting)
rotavirus
genome type, what does it cause, vaccines
- dsRNA
- most common cause of severe/watery diarrhea in children
- oral vaccines (85-98% effective) RotaTeq, Rotarix
- cyclical
- cause gastroenteritis
- foodborne and waterborne virus
deep mycoses
what does it lead to?
who does it affect?
how is it acquired?
- deep mycoses leads to systemic or disseminated infections and often spreads to the skin
- usually in immunosuppressed
- acquired by -
- inhalation of fungi or spores
- contaminated medical equipment
Leishmaniasis
type of disease, causing agent, where its found in the world, prevalence, presentations, transmission, reservoirs, dx, tx
- arthropod vector disease
- cause - Leishmania spp.
- flagellated protozoan
- endemic in most tropical and subtropical areas worldwide
- transmission - bite of female sand fly
- reservoirs - wild and domestic animals
- presentation
-
visceral leishmaniasis (kala-azar)
- ~100% mortality if untreated
- invade liver and spleen
- s/s - fever, weight loss, anemia, abd. protrusion
-
mucocutaneous leishmaniasis (espundia)
- invade skin and mucous membranes
-
cutaneous leishmaniasis
- mild to disfiguring skin lesions; ulcers
-
visceral leishmaniasis (kala-azar)
- dx - tissue under light microscope
- tx - all visceral and mucosal presentations should be treated with pentavalent antimonial (Sb) therapy
- significant side effects - n/v, heaptotoxicity, cardiotoxicity (choose whether to treat cutaneous or not because side effects are significant)
Measles (rubeola)
type of disease, genome type, s/s, transmission, reservoir, where is it a problem, vaccine
- airborne viral disease
- ssRNA
- s/s: mild, cold-like
- few are fatal due to complications (pneumonia, ear infections, seizures)
- Koplik’s spots in mouth followed by red rash on face then extremities
- transmission: respiratory droplets
- highly infectious
- humans are the only reservoir
- significant cause of death in developing countries
- immunity is lifelong
- MMR vaccine
Drug resistant protozoan diseases
- malaria
- visceral leishmaniasis
cryptosporidiosis
type of disease, microorganisms that causes it, where it occurs (example), transmission, dx, tx, life cycle, ID
- foodborne and waterborne protozoan disease
- cause - Cryptosporidium parvum and C. hominis
- Milwaukee epidemic 1993
- reservoirs - mammals, birds, reptiles
- outbreaks worldwide, including UT
- complicated life cycle (asexual and sexual)
- transmission - fecal-oral
- typical s/s
- dx - several stool samples (examined microscopically and PCR)
- difficult; not routinely done
- tx - usually none
- fluids
- anti-diarrheal medication
- chlorine resistant
- ID 10 oocysts
- life cycle - oocysts undergo excystation to sporozoites that penetrate intestinal cells and multiply
herd immunity (group immunity)
- the proportion of immunized individuals in a population
- the smaller the number of susceptible individuals, the less opportunity for contact between them and infected individuals
- herd immunity necessary depends on what infectious disease
What are some issues with Koch’s postulates?
- isolates only one microbe
- ethical issues (polio only infects humans)
what is a method used to improve compliance with TB antibiotics?
Direct Observational Therapy Short Course (DOTS)
deliver antibiotics daily and ensure compliance
Rubella (german measles)
type of disease, genome type, s/s, transmission, RISK FACTOR, where is it found, vaccine
- airborne viral disease
-
ssRNA
- highly infectious; mildest rash-forming virus
-
endemic worldwide
- eradicated from U.S. in 2004
- s/s: low fever, rash (2-3 days), cold-like
- 50% asymptomatic
- transmission: airborne and urine
- risk factor: prenatal transmission
- 85% of babies born to mothers who has rubella in the first 3 mo of pregnancy have defect
- MMR vaccine
virulence
- refers to the severity of the disease
- measured by the proportion of total cases with overt infection divided by the total number of infected cases
- if fatal, use case fatality rate
Hib infections include…
- meningitis
- bacteremia
- pneumonia
drug resistance in TB
-
multiple drug-resistant (MDR)
- resistant to INH and RIF
-
extremely drug-resistant (XDR)
- reisistant to multiple treatments; rare but increasing
Exotoxins
- offensive strategy
- proteins synthesized by the microbe and secreted into the host’s tissues
- examples:
- cytotoxins - kill or damage cells
- neurotoxins - block nerve impulse transmission
- enterotoxins - affect cells lining GI tract
Enterobiasis
type of disease, cause, where its found, transmission, s/s, tx, dx
- “pinworm disease”
- roundworm disease
- caused by Enterobius vermicularis
- most common helminthic disease in the U.S.
- transmission: direct contact, bedclothes, inhalation
- s/s: anal itch
- drug treatment is effective
- dx. scotch tape test
Giardiasis
type of disease, microorganism that causes it, how common is it, s/s, dx, tx, life cycle, portal of entry and exit, ID
- foodborne and waterborne protozoan disease
- cause - Giardia lamblia or G. duodenalis
- flagellated protozoan
- one of the most common waterborne diseases in the U.S.
- transmission -
- swallow cysts in contaminated water
- fecal-oral route (day care, veggies)
-
ID ~10 cysts
- shed 1-10 billion cysts daily in feces
- chlorine resistant
- life cycle -
- cysts enter body by oral route -> sexually reproduce into trophozoites -> trophozoites attach to intestinal lining by sucking disks -> defecated out (don’t survive long in environment)
- s/s - fatty stool (steatorrhea)
- begin 1-3 wks after infection
- self limiting ~10 days
- tx - drug treatments (i.e. metronidazole)
- dx - 3 stool samples (phases of shedding)
cryptococcosis
type of disease, where it is found, pathogens, s/s, tx, dx, at risk
- reportable in Oregon and Washington
- fungal disease
- s/s - flu-like
- can disseminate to other organs
- inflammation of brain and meninges
- pathogens -
-
Cryptococcus neoformans
- found in soil
- transmit by inhalation
- causes cryptococcal meningitis (sub-saharan africa)
- laten infection or symptomatic disease
-
C. gattii
- symptoms 2-14 mos after exposure
-
Cryptococcus neoformans
- at risk - immunocompromised
- dx - microscope, culture (cannot distinguish between two species)
- tx - antifungal for at least 6 mos
sterilization
kills everything (usually >6 logs), including spores
how are viruses selected each year for the influenza vaccine?
- send viruses to 5 reference labs:
- Atlanta, Georgia
- London
- Melbourne, Australia
- Tokyo, Japan
- Beijing, China
foodborne infection
- bacteria multiply in the intestinal tract and secrete enterotoxin
- cause n/v, diarrhea, possible bloody stools
- symptoms as early as one hour after eating to as late as 10 days
- can last from one day to months
kissing bug that spreads chaga’s disease
sand fly that transmits Leishmaniasis
Drug resistant bacterial diseases
- tuberculosis
- gonorrhea
- staphylococcal infection
- shigellosis
- typhoid fever
- pneumococcal pneumonia
- enterococcal infection
- acinetobacter infection
John Snow
- 1849
- cholera outbreak in Broad Street, London
- linked to contaminated water supplies
- removed handle from pump -> decrease in cholera
schistosomiasis (bilharzia)
type of disease, what causes it, s/s, place it occurs, portal of entry and exit, dx, tx
- flat worm (fluke) infection - most important
- malaria is the only nastier parasitic infection
- caused by blood flukes
- Schistosoma japonicum
- S. haematobium
- S. mansoni (associated with hepatosplenic disease)
- many countries, but not present in the U.S.
- requires freshwater snail host
- portal of entry: penetrate the skin of bathers and migrate into the blood vessels
- adult worms escape detection by coating themselves with host antigens
- can infect primary organs
- can have infection for years
- worms feed on blood (heart and liver)
- portal of exit: feces and urine
- s/s: itchy, flu-like
- major - damage to liver, intestine, bladder (distended abdomen)
- rare - move to brain or spinal cord
-
dx. find eggs in urine or stool (multiple days)
- serum testing for antibodies (6-8 wk post infection)
- tx. available
Drug resistant viral diseases
- HIV
- hep B
- hep C
4 classifications of fungal diseases
- superficial mycoses
- subcutaneous mycoses
- mucocutaneous mycoses
- deep mycoses
antibiotic therapy for TB and what is an issue?
- primary infection: isoniazid - 6 mos
-
primary active TB disease: antibiotic combination for 6-9 mos
- combinations include isoniazid (INH), rifampin (RIF), streptomycin, ethambutol, pyrazinamide daily 2 mos; then INH + RIF daily 4 mos
- possible toxicity
- compliance, affordability, and access are an issues
what type of virus is this?
ebola
diagnosis of TB
-
Tuberculin skin test (Tst)
- purified protein derivative (PPD) is injected
- examine site after 48-72 hrs
- lesion >5 mm is positive (just means previous exposure)
- chest x-ray
- sputum test
smallpox history
- described 10,000 years ago
- pox scars on mummy of Pharaoh Ramses V from 1157 B.C.
- biowarfare - british troops gave contaminated blankets to native americans
- edward jenner developed the vaccine in 1796 - “first vaccine”
- only disease agent to be eradicated
measures taken to reduce numbers of new HIV diagnosis
- alert physicians by sending letters
- PrEP recommendation for HIV-negative, high risk contacts
- increased prevention, testing, and education efforts
- decrease stigma around homosexuality
reproduction rate (R0)
- measure of the potential for transmission
- mean number of secondary cases, occurring in a nonimmunized population in the wake of a particular infection
- factors to consider: population density, duration of contagiousness
- R0 must be >1 to spread; <1 will die out
- directly linked to herd immunity
- can have high R0 and low virulence, vice versa
why are there so many new flu strains?
- RNA virus so no proof-reading in replication -> random replication errors
- 109 in host, so 1/1,000,000,000 means every host has 1 mutant
- 8 segments -> reassortment
fish tapeworm
portal of entry and exit, where its found, what it leads to
- Diphyllobothrium latum - largest parasite that infects humans (30 ft)
- portal of entry: eating raw and undercooked freshwater fish that contain fish tapeworm cysts
- rivers or lakes worldwide
- portal of exit: stool
- may lead to vitamin B12 deficiency and anemia
viruses
unicellular, multicellular, or acellular?
submicroscopic or microscopic?
genome?
examples?
- acellular
- genome RNA or DNA
- obligate intracellular parasite
- submicroscopic
- examples: HIV/AIDS, measles, rabies
biology of fungi
eucaryotic or prokaryotic?
unicellular or multicellular?
forms?
life cycle?
how many species? how many cause disease?
- eucaryotic
- unicellular (yeasts) or multicellular (molds)
- microscopic (yeasts)
- complex life cycles (asexual/sexual)
- mode of multiplication - spore formation
- inhaled or land on skin
- over 50,000 species of fungi
- only about 25 cause disease
disinfection
kills all but spores (usually 5 logs)
Salmonellosis
cause, treatment, carriers of salmonella, type of disease
- Salmonella (g- bacilli)
- tx. antibiotics not necessary unless spreads from intestines
- carriers: iguanas, lizards, snakes, turtles
- symptom: Salmonella enteritidis
- foodborne and waterborne bacterial disease
Algae
unicellular, multicellular, or acellular?
prokaryotic or eukaryotic?
submicroscopic or microscopic?
genome?
replication?
metabolism?
cell wall or no cell wall?
- unicellular or multicellular
- eucaryotic
- microscopic (unicellular only)
- DNA genome
- asexual replication
- cell wall
- metabolism - photoautotrophs
- not infectious; some produce neurotoxin
foodborne and waterborne bacterial diseases (3 food intoxications and 7 food poisoning)
portal of entry and portal of exit
- portal of entry important for outcome of infection
- portal of exit required for transmission to a new host
Hepatitis A
type of genome, s/s, transmission, dx, vaccination
- +ssRNA
- s/s: mild, abrupt onset
- jaundice, n/v, dark urine
- many asymptomatic
- transmission: fecal-oral
- dx: detect antibodies in blood
- vaccine available
- 2 dose series 12-23 mos
- foodborne and waterborne virus
chronic carrier
harbor pathogen for long periods of time after recovery, without ever becoming ill again
do not transmit
Ascaris Lumbricoides
type of disease, where it occurs, portal of entry and exit, tx, s/s, how common is it
- roundworm disease
-
most common human worm infection
- infects ~25% of world’s population
- tropics and subtropics
- 50% of children infected in southeast U.S.
- infects small intestine
- many asymptomatic
- mild abdominal discomfort
- damage to lungs may occur
- severe cases - malnutrition, suffocation, intestinal obstruction, impaired growth, invade gallbladder and liver, death
- portal of exit: feces
- portal of entry: ingestion (hands or food contaminated with dirt containing feces)
- tx. chemo medication
biological indicators
- Bacillus sterothermophilus heat-resistant
- Bacillus subtilis chemical resistant
Tularemia (rabbit fever)
type of disease, cause, virulence, transmission, s/s, can be used as, tx, vaccine
- airborne bacterial disease
- zoonotic disease
- Francisella tularensis (g- bacillus)
- highly virulent and low ID
- Reservoirs: small animals
- transmission:
- inhalation
- contact w/ infected animals
- ingestion of contaminated food or water
- tick bites (most common)
- s/s - depends on how it enters the body (ulceroglandular/glandular, oculoglandular, oropharyngeal, pneumonic)
- high fever 104ºF
- potential biological weapon
- tx: antibiotics for 10-21 days
- vaccine for high-risk
antiviral mechanisms (5)
-
Neuraminidase inhibitor
- tamiflu (zanamivir). BTA938 is better
- attach to receptors on virion so new virions can’t be released
-
attachment inhibitor
- anitbodies
-
RNA-dependent RNA polymerase inhibitor
- ribavirin
-
protease inhibitor
- in HAART for HIV
-
reverse transcriptase inhibitor (HIV)
- originally AZT
Pertussis - Whooping cough
type of disease, causing agent, reservoir, damage, prevalence, where its found in the world, tx, prevention
- airborne bacterial disase (upper respiratory)
- Bordetella pertussis (g- coccobacillus)
- humans are only reservoir
- very contagious!
- exotoxin damages ciliated cells in airway
- reemerging disease
-
endemic in U.S.
- epidemic q3-5 yrs
- tx: antibiotics (but cough will persist)
- prevention: vaccination (DTaP)
- booster every 10 years
capsules as defensive stategy and examples
- removal of the capsule makes bacteria more susceptible to phagocytosis
- examples: Anthrax, plague, streptococcal diseases (i.e. scarlet fever, “strep” throat, pneumococcal infection)
symbiosis
“living together”
an association between two or more species (i.e. mutualism, parasitism, commensalism)
toxigenicity
- the capacity of the agent to produce a toxin or poison (i.e. Clostridium botulinum)
- = # affected / # exposed
2015 HIV outbreak
what intervention was used?
-
Scott County, Indiana
- socio-economic factors (unemployment, uneducated, poverty)
- up to 3 generations injecting together (oxymorphone)
- ~93% hep C coinfection
- 181 outbreak-related HIV infections identified in about one year
- intervention:
- contact tracing
what is the singular purpose of a virus?
replicate themselves as many times as possible and destroy cells in its pathway
what type of virus is this?
rotavirus
In Utah, HIV is commonly coinfected with what disease?
primary and secondary syphillus infections
malaria
type of disease, causing agent, mortality, s/s, transmission, tx, dx, prevention, where is this disease found in the world
- arthropod vector disease
- s/s - multiple episodes of flu-like symptoms
- 85% of deaths in children
- cerebral malaria 1-2% mortality rate
- ancient disease
- cause - Plasmodium spp.
- non-motile protozoan
- four major species: P. falciparum, P. vivax, P. malariae, P. ovale
- P. falciparum causes cerebral malaria
- transmission - anopheles mosquito (primary host)
- humans are secondary host
- tx. anti-malarial drugs - chloroquine
- infect RBCs
- significant in sub-saharan africa
- dx. blood smear
- prevention
- spraying
- mosquito nets
passive immunization
- preformed antibodies - immune serum or immunoglobulin
- antibodies (antitoxin or anti-venom) present immediately
- short-lived, no memory
- serum sickness due to immune reaction
roundworms (nematodes)
- enterobius vermicularis (pinworms)
- ascaris lumbricoides
- trichinellosis
- trichuris trichuria
- hookworms
- lymphatic filariasis - elephatiasis
- onchocera volvulus - river blindness
- dracanculus medinensis - guinea worm
Aspergillosis
type of disease, where is it found, at risk, s/s, dx, tx, incidence, mortality rate
- fungal disease
- found - indoors and outdoors
- at risk - immunocompromised (ashma, transplants, cystic fibrosis, chemo, HIV)
- rare; not reportable
- mortality 100% (death in weeks)
- s/s -
- allergic bronchopulmonary signs (wheezing, coughing)
- invasive aspergillosis symptoms (fever, shortness of breath, aspergilloma)
- dx - chest x-ray, CT, biopsies
- tx - antifungal meds (Amphotericin B and itraconazole)
- usually ineffective
active carrier vs healthy carrier (reservoirs of infection)
- active carriers - individuals who have a microbial disease
-
healthy carriers - have no symptoms but still transmit
- typhoid mary (mary mallon)
- continue to harbor the microbe after recovery
Naegleria fowleri
where is this disease found, fatality, transmission, s/s, dx, tx, prevalence
-
primary amebic meningoencephalitis
-
brain-eating amoeba!
- affects nasal passages
-
brain-eating amoeba!
- typical in southeast
- warm or hot freshwater around the world
- rare
- transmission - contact with contaminated water but NOT INGESTION
- chlorine resistant
-
death within 10-12 days
- almost 100% fatal
- s/s -
- stage 1 - headache, nausea
- stage 2 - stiff neck, seizures, hallucinations (looks like meningitis)
- dx - organism in CSF, PCR
- investigational drug - CDC miltefosine
active immunization
- stimulates immune system to produce antibodies and memory cells
- natural active immunity
- artificial active immunity
Enterovirus EV-D68
s/s, how common is it
- uncommon
- related to rhinovirus and poliovirus
- s/s: respiratory (worse than a cold)
six factors responsible for emerging infections
- world population growth
- urbanization
- ecological disturbances
- technological advances
- microbial evolution and adaptation
- human behavior and attitudes
Encephalitis-causing arboviruses
types, where they are found, type of virus, surveillance, reservoirs and dead-end hosts
- west nile fever, eastern equine encephalitis, western equine encephalitis, St. Louis encephalitis, colorado tick fever
- U.S.
- all are RNA viruses
- viruses cycle between wild animals (primarily birds and mosquitos) with humans and horses serving as dead-end hosts
- surveillance -
- test adult mosquitos
- draw blood from chicken populations
how many hospitalized patients will contract a hospital-acquired infection?
1 out of 20
DTaP <7 years
5 dose series
2 mos
4 mos
6 mos
15-18 mos
4-6 yrs
lymph
fluid derived from blood and drains back into blood
waxy coat
- defensive virulence strategy
- interferes with phagocytosis
- example: Mycobacterium tuberculosis
clonal selection theory
explains how antigens select the appropriate B cells for activation and clonal expansion as plasma cells
Staphylococci
type of disease, type of bacteria, where it normally resides, what does it cause
- bacterial contact disease
- g+ cocci
- normal flora
- harmless unless skin barrier is broken down
- causes:
- purulent (pus containing) skin lesions, pimples, boils, carbuncles
- can progress to systemic infections
Cholera intoxication
cause, how common is it, characteristic, tx, type of disease
- caused by exotoxin secreted by Vibrio cholerae (g- curved rod)
-
pandemics over the centuries
- rare in U.S.
- characteristic: rice water diarrhea
- oral rehydration therapy can save lives
- foodborne and waterborne bacterial disease
Ignaz Semmelweis
- mid 1800s
- “savior of mothers”
- antiseptic procedures
- suggested that childbed fever resulted from physicians not washing their hands after dissections
- could not “prove” and was disregarded
Salmonella (g- bacilli)
causes Salmonellosis
bacterial foodborne and waterborne infection
lyme disease
type of disease, causing agent, s/s, tx, dx, where its found in the world, prevalence, life cycle
- arthropod vector disease
- cause - Borrelia burgdorferi
- gram neg. spirochete
-
tickborne zoonosis
- worldwide
- worst vectorborne disease in U.S. (morbidity)
- high incidence in Maine
- first found in Old Lyme, Connecticut
- worldwide
- s/s - flu-like, long-lasting, “bull’s-eye” skin rash, arthritis
- dx - history, blood tests
- tx - early tx with antibiotics leads to quick recovery
- vaccine under development
- complex 2 year life cycle
Herpes simplex virus
cause, presentation, incubation, dx, tx, race/ethnicity rates
- caused by herpes simplex virus type 2 and type 1
- leading cause of genital ulcer disease worldwide
- incubation: ~4 days
- presentation:
- genital ulcurs, pain, itching, dysuria, discharge
- dx: type-specific IgG-based assay
- tx: antivirals (acyclovir, valacyclovir, or famciclovir)
- rates:
- non-hispanic blacks the most infected
Gastroenteritis
type of disease, symptoms, causes
- s/s: stomach and abd pain/camps, diarrhea, vomiting
- caused by viruses: rotavirus, norovirus, adenovirus
- foodborne and waterborne viral disease
What types of human behaviors and attitudes have contributed to emerging infections?
-
complacency - false assumption that prevention and control are no longer necessary
- examples: threatened resurgence of AIDS, lack of compliance with immunizations
-
human migration
- internally displaced persons lack water, shelter, food, and hygiene = increased infection
- refugees transmit infection from native lands
-
societal factors
- day care
- increased elderly population
- globalization of food supply
- tattooing and body piercings
acute schistosomiasis
another name, type of disease, s/s
- ‘Katayama’ fever
- flat worm (fluke) disease
- s/s: resembles ‘serum sickness’
- often asymptomatic
- flu-like; extreme cases - diarrhea (last weeks to months)
Measles, mumps, and rubella are caused by a specific virus in the family.
paramyxoviridae
toxoplasmosis
type of disease, reservoir and host, microorganism that causes it, where its found in the world, prevalence, s/s, tx, at risk, transmission, life cycle
- foodborne and waterborne protozoan disease
- cause - Toxoplasma gondii
- non-motile protozoan
-
worldwide zoonosis
- domestic and wild cats are primary reservoir and host
- rare
- transmission - ingestion of oocysts in cat feces or eating undercooked meats
- s/s -
- usually asymptomatic or mild (sore throat, fever, swollen lymph nodes)
- at risk - pregnant women, immunocompromised (invasion of the brain)
- tx - drugs for up to 1 yr
pre-exposure prophylaxis
HIV prevention strategy
Bacterial Meningitis
type of disease, dx, s/s, two common causes (tx, at risk, vaccine, carriers)
- airborne bacterial disease
- inflammation of meninges
- diagnose early
- s/s: cold-like, possible delirium, stiffness in neck and back
- 10-15% death rate w/ tx
- 11-19% long-term disabilities
- two most common causes:
-
Neisseria meningitidis (g- diplococcus)
- 10% carriers
- person-to-person respiratory transmission
- tx: meningococcemia, antibiotic therapy
- at risk: college students (prophylaxis antibiotics)
-
vaccine recommended for ages 10-25
- protects against three serotypes (B, C, Y)
-
Haemophilus influenzae type b (Hib) (g- bacillus)
- at risk: children <5
- vaccine has decreased incidence
- 10% healthy people carry Hib in nose and throat
-
Neisseria meningitidis (g- diplococcus)
viral genome replication for dsDNA
influenza surface antigenic protein spikes
-
H (hemagglutinin) spikes
- 18 subtypes (H1 - H18)
-
N (neuraminidase) spikes
- 9 subtypes (N1 - N9)
- specific antibodies against the H and N proteins are protective, but these proteins are capable of rapid evolutionary change
colorado tick fever
type of disease, where its prevalent
- encephalitis-causing arboviruses
- transmission - ticks
- prevalent in mountain forest environments at high altitudes
primary and secondary syphilis
- caused by bacterium Treponema pallidum
- incubation: ~3 weeks
- presentation:
- chancres (sores)
- rash
- dx: site specific
- urine
- swabs
- tx: Benzathine penicillin G 2.4 million units IM
- no sex for 1 week
- rates:
- U.S. higher than UT
- increasing
- males more infected than females
- age 20-24
- MSM cases increasing
- coinfects with HIV (decreasing)
E. Coli O157:H7
syndrome is causes, type of disease
- foodborne and waterborne bacterial disease
- Hemolytic uremic syndrome may result in death in children <5
Hep B vaccine
3 doses
birth
1-2 mos
6-18 mos
diseases spread by culex
- west nile
- elephantiasis
- st. louis encephalitis
- eastern equine encephalitis
west nile fever
type of disease, where its found in the world, prevalence, symptoms, affected
- encephalitis-causing arboviruses
- emerging disease in the U.S.
- mammals are susceptible
- usually no sympoms
- if symptoms are present, it’s usually severe (paralysis)