FINAL EXAM Flashcards
define microbiology
study of microscopic life
Hooke
cell theory
van leuwenhoek
discovered microscope and microorganisms
pasteur
- final disproof of spontaneous generation
- pasteurization: mild heat
- fermentation: sugar converted to alcohol
redi
- 3 jars of meat
- biogenesis
koch
- bacteria cause disease (germ theory)
- koch’s postulates
define spontaneous generation
life can spontaneously generate
- living organisms can come come from non living matter
- redi proved biogenesis
define cell theory
- cells are the smallest form of life and make up everything
- hooke
define germ theory
- microorganisms cause disease
- different organisms cause different diseases: koch
define bacteriology
study of bacteria
define mycology
study of fungi
define virology
study of viruses
define phycology
study of algae
What are the five kingdoms of life
- monera: archaea and bacteria
- protista: algae and protozoa
- fungi: yeasts and molds
- animals
- plants
Binomia nomenclature
- define
- rules
- who made it
- rules for naming organisms
- capitalize Genus but not species
- underline and italicize both
- carl von linne
define polymer
large macromolecules made by putting smaller macromolecules together
What are the major macromolecules and elements do they contain
- Carbs, proteins, lipids, nucleic acids
- C, H,O, n
Carbohydrates
- building blocks
- bonds
- enzymes
- function
- simple sugars/ polysaccharides
- glycosidic bonds
- hydrolysis
- nutrients, energy, support, protection
Proteins
- building blocks
- bonds
- enzymes
- function
- amino acids: carboxyl group+amino group+R group
- peptide bonds
- peptidase
- structure and catalysts
3 types of lipids
- triglycerides
- phospholipids
- steroids/waxes
Triglycerides
- building blocks
- bonds
- enzymes
- function
- glycerol and 3 fatty acids
- ester bonds
- lipase
- lots of energy storage
Phospholipids
- building blocks
- bonds
- enzymes
- function
- glycerol+2 fatty acids+phosphate group+ organic group
- ester bonds
- lipase
- cell membrane structure
Steroids and waxes function of each
- animal hormones
- mycolic acid
Nucleic Acids; DNA and RNA
- building blocks
- bonds
- enzymes
- function
- nucleotides: base/pentose/phosphate group
- phosphodiester and hydrogen(DNA)
- nuclease
- genetic info and protein synthesis
DNA
- double stranded
- thymine
- millions of nucleotides
- genetic info
RNA
- single stranded
- uracil
- thousands of nucleotides
- protein synthesis
explain the lock and key model of enzymes
enzymes are specific for a particular substrate
Factors that influence enzymes activity
- PH: optimal at 7
- temp: higher temp higher activity
- concentration: high concentration higher activity
Prokaryotes: exterior cell structures
- flagella
- pili
- fimbriae
- axial filaments
prokaryotic flagella
long slender thread like appendages composed of protein
- propeller like motility
prokaryotic axial filaments
- protein fibrils wound around organism and attached at two poles
- rapid motility in cork screw motion
prokaryotic fimbriae
- short hairlike fibers composed of protein
- adherence factor
prokaryotic pilli
- elongated and tubular
- bacterial conjugation: transfer DNA using plasmids
Prokaryotes: cell surface layers
- capsule
- cell wall
- plasma membrane
Prokaryotic capsule
- glycocalyx
- exterior coating of cell wall
- capsule or slime layer
- made of carbs and proteins
prokaryotic cell wall
- peptidoglycan
- shape, support, flagella attachment
plasma membrane
- phospholipid bilayer and proteins
- allow material to enter or exit
gram + cell wall
thick layer of peptidoglycan + teichoic acid
gram - cell wall
thin layer of peptidoglycan + outer plasma membrane
prokaryotes: internal cell structure
- cytoplasm
- nucleoid
- ribosomes
- inclusion bodies
- endospores
-plasmids
prokaryotic cytoplasm
gelatinous substance of cell inside plasma membrane
prokaryotic nucleiods
single long continuously arranged threas of DNA tightly coiled around proteins
- bacterial chromosome/genetic info
prokaryotic ribosomes
- free or bound to cell membrane
- 2 subunits
- protein synthesis
prokaryotic plasmids
- small circular extrachromosomal dna
- transfered by pili
inclusion bodies
- storage vessels or reserves for nutrients
bacterial cell measurement
micrometer= 1/1,000 mm
Unusual prokaryotes
- rickettsia
- chlamydiae
- mycoplasma
- bdellovibrios
- actinomycetes
unusual rickettsia
- obligate intracellular organism
- small
- need arthropod vector
- RASH
unusual chlamydiae
- obligate intracellular
- small
- elementary-reticulate-elementary
- binary fission reproduction
unusual mycoplasma
- no cell wall
- fried egg colony appearance
- smallest organism capable of living outside of host cell
unusual bdellovibrios
- leech/curved
- parasitize other gram - rods
unusual actinomycetes
- actinomyces, nocardia, streptomyces
- filamentous appearance
Eukaryotes: exterior cell structure
- flagella
- cilia
eukaryotic flagella
long projection composed of 9+2 microtubules
- much thicker than prokaryotes and few per cell
- mermaid motility
eukaryotic cilia
- like flagella but short and many per cell
- movement and feeding
Eukaryotes: cell surface layers
- cell wall
- plasma membrane
eukaryotic cell wall
- carbs and no peptidoglycan
- algae, fungi, plants
- shape and protection
Eukaryotes: interior cell structures
- organelles
- cytoskeleton: microfilaments, intermediate, microtubules
eukaryotic cytoskeleton
- cell skeleton
- support, shape, transport
- microfilaments, intermediate, microtubules
Eukaryotic nucleus
- command center
- RNA synthesis and DNA genetic info
Eukaryotic mitochondria
- power plant
- generate energy in the form of ATP
eukaryotic ribosomes
- protein factories
- mede in nucleus
eukaryotic endoplasmic reticulum
- rough: protein synthesis, packaging
- smooth: lipid synthesis
eukaryotic Golgi body
- protein packager
- modifies and targets proteins
eukaryotic lysosomes
- garbage disposal
eukaryotic microorganisms
- algae
- fungi
- protozoa
what eukaryotic organism is photosynthetic
algae
reaction for photosynthesis
6CO2 + 6H20 = C6H12O6 + 602
what photopigment do all algae possess that make some green
chlorophyll but other photopigments present as well
how are protozoa classified
locomotion
do protozoa have members involved in human disease
all classes of protozoa have members involved in human disease
dimorphic fungi
mold in nature and yeast in the body
how do yeast reproduce and what are they
budding and single cells
how do molds reproduce and what are they
spore formation and filaments of cells called hyphae
what is a mass of hyphae called
mycelium
Are viruses RNA or DNA
either RNA or DNA but not both
define nucleocapsid
nucleic acid with viral capsid
how are viruses measured
nanometers
explain icosahedral structure
- polyhedral
- 20 faces throughout
explain helical structure
- nucleic acid and capsomeres helically coiled together
- Hallow rod
how is a viral envelope acquired
as virion buds through cell membrane
purpose of viral spikes
allow viruses to penetrate host cells and cause infection
- can only be on enveloped structures
5 stages of interaction between animal virus and host cell
- attachment
- penetration
- uncoating
- assembly
- release
attachment stage of virus
most important stage for stopping infection
penetration stage of virus
endocytosis or membrane fusion
uncoating phase of virus
replication, transcription, translation
assembly stage of virus
DNA in nucleus , RNA in cytoplasm
release stage of virus
lysis without an envelope and budding with envelope
explain endocytosis
- no envelope
- engulfment of virions
explain membrane fusion
- envelope fuses with host cell
- nucleocapsid move in
explain lytic cycle
- phage attaches, penetrates, and injects itself into dna which is assembled into virions
- cell bursts and virions are released
explain lysogenic cycle
phage attcahes and infects dna in chromosome: prophage
- cell division
DNA cancers
- epstein barr
- hepatitis b
- Herpes virus 8
- HPV
RNA cancers
- retrovitus
- HIV
-AIDS - hepatitis C
TSG
Suppress proliferation
- mutations cause cancer
protooncogenes
stimulate proliferation
- mutations can cause cancer
physical requirements for bacterial growth
- temp: 37
- pH: 6-8, 7-7.2bacteria, 5-6 fungi
- gas: CO2 and O2
- osmotic pressure: isotonic conditions
chemical requirements for bacterial growth
- Carbon
- Nitrogen
- Phosphorus
- Sulfur
-… oxygen for most
how do bacteria reproduce
binary fission
process of binary fission
- cell elongates/dna replication
- invagination at mid point
- cross wall formation
- cells separate
bacterial growth curve phases
- lag
-log - stationary
- death
lag phase of growth
- cells adapting
- little to no cell division
log phase of growth
- rapid cell division
- lots of nutrients
-cells most vulnerable
stationary phase of growth
- nutrients decrease
- toxins present
- cell death=cell growth
death phase of growth
- nutrients depleted
- toxins increase
- cell death > cell growth
methods to measure bacterial growth
- turbidity
- direct microscopic count
- standard plate count
standard plate count measurement calculation
colony count x dilution factor
define sterilization
destruction of all forms of microbial life
define disinfection
destruction of pathogenic organisms
Factors that influence control methods
- size
- time
- concentration of agent
- higher temps
- pH
- special protection
- organic matter
7 physical methods of control
- heat
- filtration
- pasteurization
- osmotic pressure
- radiation
- desiccation
- low temps
Heat method of control
- superior method
- inactivates proteins
- moist heat superior to dry heat
filtration method of control
separate microbe from source
pasteurization method of control
mild heat destroys pathogens
osmotic pressure method of control
high concentrations dehydrate microbes
radiation method of control
damage to protiens and dna
desiccation method of control
dehydration inhibits bacterial growth
refrigeration method of control
decrease enzyme activity and cant reproduce
define antiseptic
chemicals applied to the body
define disinfectant
chemicals used on non living objects
action of chemical methods
denature proteins and disrupt plasma membrane
cidal vs static
cidal = kill
static=inhibit
spectrum of resistance from least to most
envelope-gram+-no envelope-fungi-gram–protozoa-mycobacterium-endospores
what are the superior chemical methods
- chlorine
- hydrogen peroxide
- aldehydes
- gaseous sterilants
3 reasons for decrease in infectious disease
- sanitation
- drugs/antibiotics
- vaccines
define antimicrobial drug
synthetic drug made in lab
define antibiotic
natural product made by 1 microbe that kills or inhibits another
how do sulfa and trimethoprin drugs work
inhibit folic acid synthesis
how do ethambutol and isoniazid drugs work
inhibit mycolic acid in cell wall
6 mechanisms of antibiotics
- inhibition of cell cell
- inhibition of protein synthesis
- disruption of nucleic acids
- disruption of plasma membrane
- inhibit folic acid
- inhibit fungal infections
drugs used to inhibit cell wall
- penecillins
- cephalosporins
- bacitracin
- vancomycin
drugs used to inhibit protein synthesis
- aminoglycosides
- tetracycline
- chloramphenicol
drugs used to disrupt nucleic acids
- quinolones
- rifampin
drugs used to disrupt plasma membrane
- polymyxins
drugs used to inhibit folic acid synthesis
- sulfonamides
- trimeothorpin
drugs used to inhibit fungal infections
- polyenes
- imidazole
- griseofulvin
explain the kirby bauer test
- tests effectivness of agent against organisms
- zones of inhibition measured
- organisms tested for SIR to drug
explain MIC test
determines minimum concentration of antibiotic that prevents growth
5 mechanisms of antibiotic resistance
- enzymes inactivate drug
- drug cannot enter cell
- pumps drug out of cell
- mutations and drug cannot bind
- alternate pathway or enzyme
define normal flora
microorganisms normally found on a habitat of the body consistently
microbe and host interactions
- mutualistic: host and microbe benefit
- commensal: microbes benefit
- opportunistic: microbes benefit host is harmed
3 major interacting factors of that determine if infection occurs
- virulence of organism
- number of organisms
- state of immune response
6 virulence factors
- optimal body site
- adherence
- escape
- invasion
- siderophores
- toxicity
3 major concerns of pathology
- etiology: cause of disease
- pathogenesis: development
- effects on patient’s physiology
Define reservoirs and what are they
- continual source/origin of organism
- humans, animals, soil, food, water
Define transmission route and what are they
- how pathogen spreads
- contact, vehicle, animal
5 portals of entry for pathogen
- respiratory
- gastrointestinal
- genitourinary
- skin/mucus membranes
- blood
4 phases of disease development
- incubation
- prodromal
- illness
- recovery
incubation phase of development
- time between infection and first s/s
prodromal phase of development
short period of mild s/s
illness phase of development
acute, full blown disease, over s/s. highest level of organisms
recovery phase of development
recovery time, s/s subside
define acute
rapid for short duration
define chronic
slow but mild and lasts longer
define primary infection
bodys defenses overcome by pathogen
define secondary infection
opportunistic organisms cause infection after primary infection
define inapparent infection
no signs and symptoms but still contagious
define endemic
constantly in geographical area
define epidemic
increase during specific period of time
define sporadic
occasionally in random sporadic ways
define prevalence
percentage of population with disease at any given time
define incidence
percentage of population with disease during specific period of time
purpose of the first line of defense
impede entry of microbes
physical barriers of first line of defense
skin and mucucs membranes
- physical, chemical, and genetic barriers
chemical barriers of first line of defense
lysozymes, acids, interferons
genetic barriers of first line of defense
some pathogens only infect specific species
components of second line of defense
- fever
- inflammation
- phagocytosis
- interferons
- compliment
steps of phagocytosis
- ingestion
- chemotaxis
- adherence
- ingestion
- digestion
steps of inflammation
- tissue damage
- chemicals released
- vasodilation
- chemotactic factors
- phagocytes respond
- tissue repair
major WBC of 1st and 2nd line of defense
phagocytes
components of third line of defense
- humoral response
- cell mediated response
what is the humoral response
production of antibodies
interaction between antigens and antibodies in humoral response
antibodies bind to epitope of antigen
antibody structure
- glycoproteins produced in response to antigen
- y shaped structure
- 4 polypeptide chains: 2 heavy and 2 light
- epitope
- hapten
5 classes of antibodies
- IgG*
- IgM*
-IgA - IgE
- IgD
IgG
- primary secondary response
- crosses placental barrier
- major class in circulation
IgM
- largest
- first Ig to increase in antigen response
IgA
- 1st line of defense
- body secretions
IgE
- allergic reactions
- bound to surface of other cells
direct pathway of antibody production
- proteins
- APC-TH2 Cells-B cells-plasma cells- antibodies
indirect pathway of antibody production
- carbs
- B cells- Plasma cells- antibodies
primary antibody response
directly after exposure, IgM responds then IgG
secondary antibody response
second exposure, memory cells, IgG is the primary response and greatly increases
T/F T cells respond to antigen only in context of MHC molecules
True
Cell types involved in humoral response
B cells
Plasma cells
lymphocytes
What is the cell mediated response
direct cell-cell contact leading to destruction of infected/abnormal cells
cell types involved in cell mediated response
APC, MHC-2, TH1, cytokines, cytotoxic cells
T cytotoxic cell lysis process
- T cells recognize antigen
- granules move to point of contact between cells and fuse with membrane
- enzyme cause lysis of target cells
- Tc Cells released unharmed to target another cell
major WBC involved in third line of defense
lymphocyte
natural passive immunity
antibodies passed from mother to fetus
artificial passive immunity
anti serum containing preformed antibodies
natural active immunity
natural immune response produces antibodies
artificial active immunity
antigen exposure through vaccine created antibodies
define vaccine
provides active acquired immunity to infectious disease
categories of vaccines
- killed bacteria or viruses
- live attenuated bacteria or virus
- toxoids/recombinant (genetic engineering)
MMR vaccine
- mumps, measles, rubella
- live attenuated
DTaP
Diphtheria, tetanus, pertussis
define antiserum
serum containing antibodies
immunoglobulin
body parts with normal flora
- skin
- eyes
- mouth/throat
- ear/nose
- LARGE INTESTINES
- external urethra
- reproductive tract
sterile body parts with no normal flora
- larynx/trachea/lungs
- stomach
- small intestines
- uterus
- blood/tissues
Respiratory tract bacteria pathogens
- streptococcus pyogenes/pneumonia
- neisseria menengitidis
- hamephilus influenza
- bordetella pertusis
- cornybactreium diptheria
- mycobacterium tuberculosis/leprae
- legionella pneumophila
Strep pyogenes/pneumonia
- gram + cocci, catalase -, hemolysis
- pyogenes: strep throat, beta
- pneumonia: alpha, diploccocci
Haemphilius influenza
- gram stain
- type
- gram - coccobacilli
- type b
Neiserria meningitidis
- gram stain
- gram - diplococci
Bordetella pertiussi
- gram stain
- infection caused
- gram - coccobacilli
- whooping cough
Corynebacterium diptheria
- gram satin
- gram - rods
- DTaP
Mycobacterium
acid fast organism
- leprae and tuberculosis
legionella pnuemonia
- gram stain
- transmission
- know
- gram - type wall
- inhalation of contaminated water
- resistant to normal chlorine
unusual prokaryotic pathogens of respiratory tract
- mycoplasma pneumonia
- chalmydiae pneumonia/psittaci
- coxiella burnetti
general fungal information
- fungal spores inhaled
- dimorphic
- most do not become systemic but they can
bacterial pathogens that cause menengitis: inflammation of meninges
- streptococcus pneumonia
- neisseria meningitidis
- Haemphilus influenza
fungal pathogens of the respiratory tract
- cryptococcus neoformans
- pneumocystis carnii
- coccidroides immitis: SW USA
- histoplasma capsulatum: Central/MW USA
- Blastomyces dermatididis: Eastern US
what two fungi pathogens were rare before AIDS and found worldwide
- cryptococcus neofromans
- pneumocystis carnii
what are the five cold viruses of the respiratory tract
- Rhinovirus (leading cause)
- parainfluenza
- RSV
- Coronavirus
- reovirus
- all RNA
Viruses of the respiratory tract
- cold viruses
- adenovirus
- influenza
- Mumps, measles, rubella
- hentavirus
- varicella zoster
- variola
Adenovirus
DNA and conjunctivitis
Influenza
- RNA
- spikes
- antigenic changes
- formulated inactivated chick embryo
influenza spikes
- hemagglutinin: attachment to host cell
- nuerominidase: penetration from host cell
influenza antigenic changes
- shift: major change in spike
- drift: minor change in spike
Mumps, measles, rubella
RNA, one type, human host, MMR vaccine
-measles is the most serious
- mumps involves parotid glands
- congenital rubella syndrome
hentavirus vector
deer mice
varicella zoster disease
DNA, herpes family, chicken pox
variola disease
small pox
intoxication vs infection
ingest toxin vs ingest pathogen that forms toxin
4 mechanisms of GI intestinal disease
- intoxication
- adherence
- adherence/invasion
- systemic
intoxication bacteria’s of GI
- staphylococcus aureus
- bacillus cereus: gram + rods
- clostridium botulinum/perfringens
staphylococcus aureus GI
- gram stain
- disease caused
- gram + cocci
- most common cause of food poisoning
clostridium botulinum
- gram stain
- consequences
- gram + rods
- neurotoxin, CNS, paralysis
adherence bacterias of GI
- enterobacteriaceae: gram - rods, E.coli
- Vibrionceae: curved gram - rods
vibriochlera
- severe dehydrateion and lost electrolytes
adherence and invasion bacteria of GI
- Shigella
- Salmonella
- E.coli
systemic bacteria of GI
- salmonella typhi: infects tissues/organs
- Yersinia
- listeria monocytogenes
yersinia
- s/s
swelling of lymph nodes that mock appendicitis
Listeria monocytogenes
- gram stain
- serious consequences
- gram + rod
- dangerous for pregnant women and immunosuppressed
protozoa of GI and significance and motility of each
- entamoeba histolytica: pseudopods
- balantidium coli: cilia, swine pigs
- giardia lambila: flagella, waterborne diarrhea
- toxoplasma gondii: uncooked meat/cats
- cryptosporidium parvum: AIDS, found in lakes and streams
viruses of GI
-local: norwalk and rotavirus
- systemic (enteroviruses): polio, coxsackie, echovirus, Hep A
- Hepatitis viruses
local norwalk Virus GI
-RNA or DNA
-disease
- RNA
- winter vomiting disease
significance of local rotavirus GI
loss of fluids/shock fatal for infants
hand/foot/mouth disease caused by what virus
coxsackie
croup caused by what virus
echovirus
Hepetitius A and E
- fecal/oral route
- no chronic carriers
- short incubation
HEP B,C,D
- Blood/bodily fluids
- chronic carriers
- long incubations
Bacteria of oral cavity
- dental carrie
- gingivitis/periodontitis
process of dental carrie formation
- sucrose-glucose-dextrose-plaque-acids-erosion
fungi of oral cavity
- candida albicans: oral thrush, normal flora, opportunistic, psuedophae
Viruses of oral cavity
- herpes simplex 1: oral herpes
- cytomegalovirus: immunosupressed
- epstein barr virus: mono, cancer
Genitourinary tract pathogens
-UTI’S
-vaginitis
- STD’s
UTI’s
- gram - rods, e. coli
- nosocomial catheters
- cystitis and pylenephritis
Vaginitis
- candida albicans: endogenerous
- trichomonas vaginalis: flagellate protozoa
- gardnerella vaginalis: gram - rod
STD Bacteria
- chlamydia trachomatis: gram - rod
- neiserria gonorrhea: gram - diplococci
- treponema pallidum: syphilis spirochete
- strep. agalactiae: complications, grp B beta
STD viruses
- herpes simplex 2 : genital herpes
- hep B: Liver cancer
- HPV: warts
- HIV: AIDS
local std infections
papillomavirus and herpes
systemic std infections
syphilis, aids, gonorrhea
bacteria skin pathogens
- streptococcus aureus: hair follicles
- staphylococcus pyogenes: necrotizing facitis
- psuedo aeruginosa: slime layer
- clostridium tetani: lock jaw
- clostridium perfringens: gas gangrene
degine dermatophyte
fungal infections of hair, skin, and nails
direct zoonoses
- bacillus anthracis
- rabies
bacillus anthracis
- gram + rod
- cutaneous, gastric, pulmonary
rabies
- RNA, bullet shaped
- CNS/PNS- encephalitis
indirect zoonoses
- yersinia pestis
- borriella borgdofieri
- rickettsia
- hemoflaggelates
- sporoza
yersinia pestis
plague
rodent-rat flea
bipolar staining
borriella borgdofieri
lymes disease , spirochete
animals/humans-deer tick
rickettsial diseases
rickettsi: rocky mountain: tick
prowazeki: endemic: body lice
typhi: epidemic: rat flea
hemoflagellates
- long, slender, flagellated
- trypansoma: tste fly, reduvid bug
- leishmania: sand fly
sporoza
- non motile protozoa
- plasmodium: mosquito, malaria
- babesio microti: ixodes scapularis
zoonose viruses
- togaviridae/bunyaviridae
- RNA, masquitos
- encephalitis