encoding and decoding Flashcards

1
Q

what did Sir Archibald Garrod research?

what were his conclusions?

A

he researched that genes exert their effects through enzymes
his conclusions were that many inborn errors of metabolism seem to be caused by the absence of particular enzymes. proof that many genes bring about their effects through enzymes was provided by scientists beadle and tatum.

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2
Q

what is alkaptonuria?

A

it is when some individuals lack the enzyme homogentisic acid oxidase. that breaks down the amino acids tyrosine and phenylalanine, a build up of which leads to an accumulation of homogentinsic acid which makes pee dark brown :/

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3
Q

what is phenylketonuria?

A

it is the disorder where phenylalanine hydroxylase is absent. this enzyme is involved a metabolic pathway where it converts phenylalanine into tyrosine. if there’s no enzyme then phenylalanine accumulates in the blood leading to high levels which damage the nervous system and lead to mental retardation

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4
Q

what is neurospora crassa?

A

its a good lab model organism and it can reproduce by asexual reproduction- each spore only has one set of chromosomes and its good for genetic analysis as theres only one allele for each characteristic therefore a recessive mutation is not masked by a dominant allele

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5
Q

what does it mean if something is grown in “minimal medium”?

A
it means the minimal medium contains all the essential basic nutrients needed for the organism to grow and all the other things are made by biosynthetic pathways dependant upon enzymes
such as:
-sugar
-source of nitrogen
-mineral ions
-vitamin broth
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6
Q

can you explain the steps of the beadle and tatum experiments?
And what was the purpose of the experiments?

A
  1. Grow Neurospora on minimal medium
  2. Expose cultures to X-rays to induce mutations in DNA
  3. Isolate spores
  4. Culture each spore individually in “complete medium” to produce next generation
  5. Sub-culture and test whether they can still grow on minimal medium

purpose: if a mutant could grow in one of the test tubes they had set up then it showed that it was missing an enzyme to produce a certian amino acid

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7
Q

what is the genetic code?

A

it is a code that contains all the info required to make protein/ amino acid and it is encoded in the DNA sequence of a gene

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8
Q

how is RNA different from DNA?

A
  • it only has one polynucleotide chain, not 2
  • it contains ribose instead of deoxyribose in the backbone
  • it has uracil instead of thymine
  • DNA is stuck in the nucleus but RNA can go anywhere in the cell
  • RNA is much less stable that DNA
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9
Q

what is transcription?

A

mRNA is accurately copied from the DNA template of the gene. its carried out by an enzyme called RNA polymerase and it makes a complimentary copy of DNA. it is made directionally from the 5’ to 3’

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10
Q

what is translation?

A

it is when RNA is decoded by the ribosome and converted to a protein with a specific sequence

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11
Q

how many different amino acids are there?

A

20

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12
Q

what is a codon?

A

it is a triplet of nucleotides which specify one amino acid

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13
Q

what is it about tRNA that allows them to help ribosomes translate code?

A

they are “bilingual” as they have one end that can bond to amino acids to take them to the ribosome and another end that can “speak” to DNA (called an anti-codon) so that it knows the correct amino acid to bring

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14
Q

what was the first artificial mRNA synthesised and what would have been its anti-codon?

A

it was called poly-uracil and the codon was UUU, so the anti-codon wouldv’e been AAA. the tRNA that corresponds to that codon is phenylalanine (Phe)

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15
Q

how does the mRNA know what 3 nucleotides make up a codon?

A

it knows because of “punctuation”

there are go codons (AUG) and stop codons (UAA, UAG, UGA) to help the mRNA know when to start and stop transcription

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16
Q

what would happen if you mutated the last base of a thereonine codon?

A

it would stay the same as it would be a silent mutation ending up with the same amino acid

17
Q

what would happen if you mutated the last base of tyrosine codon?

A
  • if you mutated from a T to a C, or a C to a T, there would be no change
  • if you mutated a T to an A to a stop codon which would result in a truncated protein which would probably be non-functional, it would be a nonsense mutation
18
Q

translate the following mRNA sequence?
5’ AUGGAAGCGGAUUCCGACGAUUAG 3’
how many amino acids are there in this chain?

A

7 amino acids in this chain as the first and last are the go and stop codons
Ser, Glu, Ala, Asp, Ser, Asp, Asp, Stop

19
Q

where else has DNA apart from the nucleus?

A

mitochondria-it has a separate chromosome with its own genes and it uses its own codon translational scheme

20
Q

what does E. coli hacking mean?

A

it means scientists are trying to reduce degeneracy of the e. coli genome by erasing 7 of the 64 codons so that it would be immune to attack by viruses. they are also planning to reintroduce some lost codons so they could make some impossible proteins which could maybe be used as new drugs/ commercially important proteins

21
Q

what are the characteristics of DNA?

A
  • double stranded
  • four bases
  • anti-parallel (one strand is 3’-5’, the other is 5’ -3’
  • complimentary base pairing
22
Q

what is reverse transcription?

A

it is when RNA is converted into DNA, primarily used by viruses to insert their DNA into cells and infect them

23
Q

what is reverse transcription?

A

it is when RNA is converted into DNA, primarily used by viruses to insert their DNA into cells and infect them