DNA, RNA and Proteins Flashcards
Which type of mutation does not change an organism’s phenotype despite changing its genotype?
Silent
Nonsense
Missense
Frameshift
Silent
Explanation:
Silent mutations will change a DNA sequence without affecting the phenotype of the organism. This can occur either in an intron, which will not be translated, or by replacing a single nucleotide with another nucleotide without changing the amino acid recruited by the codon. Silent mutations often result from the degenercy of codons.
Frameshift, missense, and nonsense mutations, however, change both an organism’s genotype and phenotype by altering its DNA. A frameshift mutation results from the insertion or deletion of a nucleotide, causing a shift in the codon reading frame for every codon read after the mutation. Missense mutations replace one amino acid with another, and nonsense mutations result in a premature stop codon, terminating translation and resulting in a shortened protein.
What would be an immediate consequence for a cell with a mutant version of DNA polymerase III that has lost its proofreading function?
Inability to replicate DNA
Inability to complete the cell cycle
A higher rate of mutations during replication
Cancer
Correct answer:
A higher rate of mutations during replication
Explanation:
Proofreading is a function of DNA polymerase III that helps prevent errors during replication. An immediate consequence of a cell that cannot proofread would be a higher rate of mutations during replication. The other options could potentially happen later in the cell’s life, but they would only occur as indirect results of the new mutations.
Which of the following proteins are not situated within the core of the nucleosome?
H4
H2A
H2B
H3
H1
Correct answer:
H1
Explanation:
Histones are composed of several proteins, and are used to compact DNA within the nucleus. When DNA is wrapped around a group of eight histones, the resulting structure is a nucleosome.
The histone protein H1 is affixed on top of the nucleosome beaded structure, so as to keep the DNA that has wrapped around the nucleosome in place. It is not found in the core of the nucleosome.
H2A, H2B, H3, and H4 are very similar in structure and form the core of the histones
Which of the following classes of proteins are essential for DNA mismatch repair?
All of these answers
DNA polymerase
DNA ligase
Nuclease
Correct answer:
All of these answers
Explanation:
For correct mismatch repair all three of the choices are essential. A nuclease is required to remove the damaged DNA. DNA polymerase is required to synthesize new DNA. DNA ligase is essential for synthesizing a phosphodiester bond between the newly synthesized DNA and the original DNA.
Which enzyme is not involved in DNA replication?
Gyrase
Ligase
Lipase
Helicase
DNA polymerase
Correct answer:
Lipase
Explanation:
Lipase is the general name for an enzyme that breaks down lipids. Ligase joins the Okazaki fragments on the lagging strand of the DNA during replication. DNA polymerase is the enzyme that catalyzes the polymerization of nucleotides in the 5’ to 3’ direction. Helicase separates the two strands of the double helix to facilitate formation of the replication bubble. Gyrase relieves strain on the DNA while it is being unwound by helicase.
Which enzyme has a proofreading ability during DNA replication?
Primase
DNA polymerase
DNA gyrase
DNA helicase
Correct answer:
DNA polymerase
Explanation:
Proofreading is an important part of the DNA replication process to ensure that if mismatched base pairs are incorporated into the newly synthesized DNA strands, they get replaced with correct base paired nucleotides. Mismatched base pairs have the potential to cause disease. DNA polymerases have proofreading abilities. They are able to remove mismatched nucleotides from the end of a newly synthesized strand. Post-replication repair mechanisms also exist to prevent damage and error.
You are trying to perform in vitro DNA replication on a small circular piece of DNA. You have DNA polymerase, Primase, Helicase, DNA ligase and all of their accessory proteins. You can get DNA replication to initiate but it never goes for very long without stopping. You visualize your small piece of DNA under an electron microscope and notice that after the initiation of replication, it looks all knotted up. What enzyme can you add to remedy this problem?
Topoisomerase
Knottase
Reverse Transcipase
RNA polymerase
Telomerase
Correct answer:
Topoisomerase
Explanation:
As the replication fork of DNA proceeds and continues to unwind the double helix, the DNA upstream of the fork gets over wound and knotted up which will eventually arrest replication as the fork will not be able to proceed any further. The enzyme topoisomerase corrects for this overwinding ahead of replication forks by swiveling and rejoining DNA strands
Which of the following characteristics is NOT seen in both DNA and RNA?
A double helix
Adenine
A pentose sugar
Read in the 5’-to-3’ direction
Correct answer:
A double helix
Explanation:
DNA and RNA share many characteristics. They are both composed of nucleotide monomers and are read in the 5’-to-3’ direction. They also share the same complementary base pairs, except RNA uses uracil in place of thymine; both contain adenine.
RNA does not present in a double helix structure, and is typically single stranded.
A section of mRNA is composed of 28% guanine bases. What percentage of the RNA strand is cytosine bases?
More information is needed in order to answer this question.
22%
11%
28%
Correct answer:
More information is needed in order to answer this question.
Explanation:
Remember that mRNA is not a double helix like DNA; RNA is only one single strand of nucleotides. This means that we are unable to say that there are just as many cytosine bases as guanine bases, even though they would be able to form nucleotide pairs in DNA. For all we know, there could be zero cytosine bases! More information is needed before we can make a conclusion as to how many cytosine bases are in the RNA section.
Which of the following statements is correct about the differences between DNA and RNA?
DNA is not present in prokaryotes, while RNA is
The sugar molecule in RNA has one more hydroxyl group than the sugar molecule in DNA
DNA is present as a single-stranded molecule while RNA is double-stranded
RNA contains the same bases as DNA, except uracil is present instead of guanine
RNA is synthesized from DNA during transcription, but DNA can never be synthesized from RNA
Correct answer:
The sugar molecule in RNA has one more hydroxyl group than the sugar molecule in DNA
Explanation:
The only correct statement here is the one regarding the types of sugar in the two molecules. RNA stands for “ribonucleic acid,” which is a simple way to remember that it contains the sugar ribose. DNA, on the other hand, stands for “deoxyribonucleic acid.” Its sugar is deoxyribose, which is identical to ribose except it is missing a hydroxyl (-OH) group on its second carbon. In total, RNA contains three hydroxyl groups, while DNA contains only two.
In RNA, uracil replaces thymine, not guanine. DNA is generally double-stranded and RNA is generally single-stranded (though both can exist in either form). Prokaryotes contain both DNA and RNA. Finally, DNA is transcribed to RNA in most biological organisms, but RNA can be reverse transcribed to DNA by the protein reverse transcriptase, which is found in some viruses.
Which of the following statements is false?
DNA is a polyanion, while RNA is a not
DNA is typically double-stranded, while RNA is typically single-stranded
DNA uses thymine, while RNA uses uracil
DNA and RNA utilize different sugars in their sugar-phosphate backbones
Correct answer:
DNA is a polyanion, while RNA is a not
Explanation:
Both DNA and RNA are polyanions. This is just a fancy way of saying that they are polymers of negatively charged molecules. The phosphate groups in the sugar-phosphate backbone account for this, as phosphate groups generally carry a charge of negative three.
DNA uses thymine and deoxyribose sugar, while RNA uses uracil and ribose sugar. While DNA is usually molded into a double-stranded helix, RNA is usually single-stranded, which allows for the binding of anticodons during translation.
Which of the following is characteristic of RNA?
RNA is a permanent molecule in most cells
RNA is less stable than DNA
RNA is typically double-stranded
RNA has a hydroxyl group on the 2’ carbon of ribose
Correct answer:
RNA has a hydroxyl group on the 2’ carbon of ribose
Explanation:
RNA and DNA are very similar in composition, but differ in structure and function. DNA is used to code for genetic material, while RNA is used to generate protein products. Since DNA has a long-term goal of storing information and RNA has a short-term goal of increasing production, it makes sense that DNA is a permanent molecule and RNA is transient. Soon after translation, mRNA is degraded by ribonuclease (RNase). The transient nature of RNA is also linked to its stability. DNA must be very stable to avoid problems with gene storage. DNA is double-stranded to help enhance stability. In contrast, RNA can afford to be less stable and is easily degraded, partially due to its single-stranded structure.
Another key difference between DNA and RNA is the sugar component of the nucleic acid backbone. DNA uses deoxyribose, which lacks a hydroxyl (-OH) group on the 2’ carbon. RNA uses ribose, in which this hydroxyl group is present on the 2’ carbon.
Which of the following is not a true characteristic of an RNA molecule?
It can be double stranded
It can be single stranded
It contains deoxyribose sugar
It contains the nucleotide uracil
Correct answer:
It contains deoxyribose sugar
Explanation:
RNA molecules are most commonly found in a single stranded form (e.g. mRNA), but they can also be found in a double stranded form (e.g. viruses). It has four base pairs—uracil, adenine, guanine, and cytosine—and a ribose sugar-phosphate backbone. DNA molecules contin a deoxyribose sugar in their sugar-phosphate backbone; thus, this answer is incorrect.
Which of the following types of RNA is double stranded?
Viral RNA
rRNA
tRNA
mRNA
Correct answer:
Viral RNA
Explanation:
Many types of RNA exist within cells, some are single stranded and others are double stranded. The following are among the types of single stranded RNA: mRNA (messenger RNA), tRNA (transfer RNA), and rRNA (ribosomal RNA). Messenger or mRNA carries genetic information from DNA to ribosomes for protein synthesis. Transfer or tRNA carries amino acids to ribosomes that match with mRNA codons. Last, ribosomal or rRNA codes for ribosomes, which are necessary for protein synthesis. An example of a double stranded RNA molecule is viral RNA. Viral RNA is the genetic material of many viruses and has a structure of two complementary strands.
Which of the following choices is an element common to both DNA and RNA molecules?
Both are often single-stranded
They can both be found in the nucleus
There is deoxyribose sugar in both of their sugar-phosphate backbones
Both contain the nucleotide uracil
Correct answer:
They can both be found in the nucleus
Explanation:
DNA is a macromolecule that has a double helical form. It has four nitrogenous base pairs (thymine, adenine, cytosine, and guanine) and a deoxyribose-phosphate backbone. The two strands of the helix are joined by hydrogen bonds. On the other hand, RNA molecules can be double-stranded (e.g. viruses) or single-stranded (e.g. mRNA), but RNA most commonly exists in a single-stranded form. RNA contains four base pairs (uracil, adenine, cytosine, and guanine) and a ribose sugar-phosphate backbone. Despite their differences, these molecules share one similarity: both DNA and RNA molecules can be found in the nucleus. DNA molecules reside solely within the nucleus. RNA is transcribed in the nucleus and, once targeted and post-transcriptionally modified, can leave via nuclear pores.
Which of the following are correct regarding the central dogma of biology?
RNA signals DNA to activate protein production
DNA directs the synthesis of mRNA, which in turn directs the production of polypeptides
RNA encodes the information for the assembly of ribosomes, which are the sites of protein production
RNA assists with the replication of DNA which encodes information for proteins
Correct answer:
DNA directs the synthesis of mRNA, which in turn directs the production of polypeptides
Explanation:
DNA encodes information for the production of messenger RNA which then interacts with the cell’s protein-synthesizing machinery to produce proteins. Ribosomes are the sites of polypeptide synthesis but are not coded for by RNA. The central dogma of biology is DNA → RNA → protein
Which of the following are properties of RNA?
Ribose, uracil, and a linear structure
Ribose, thymine, and a linear structure
Deoxyribose, uracil, and a globular structure
Deoxyribose, thymine, and a linear structure
Deoxyribose, ribose, and uracil
Correct answer:
Ribose, uracil, and a linear structure
Explanation:
Remember that the sugar for DNA is deoxyribose, and that for RNA is ribose. The nitrogenous bases adenine, guanine, and cytosine in DNA and RNA are the same. However, DNA which contains thymine and RNA that contains uracil. The structure of DNA is a double helix. There are three different structures of RNA: linear, clover-leaf, and globular. Also note that RNA is single stranded and DNA is double stranded
The entire collection of DNA in a cell is called the __________.
chromatin
genome
DNA ladder
chromosome
nucleus
Correct answer:
genome
Explanation:
The genome is defined as the total genetic library of a cell. It is estimate that in humans, the genome codes for about 25,000 different genes.
DNA with its associated protein scaffold forms a complex called __________.
chromatid
centromere
chromosome
chromatin
nucleotide
Correct answer:
chromatin
Explanation:
Chromatin is the DNA-protein complex and is organized as a long, thin fiber. Chromosomes are densely-packed chromatin, wrapped around proteins called histones. The centromere is the region of a condensed chromosome that connects sister chromatids to each other, and is the site at which the spindle fibers attach during mitosis in order to move them about the cytoplasm.
In DNA adenine (A) bonds to thymine (T) and guanine (G) bonds to cytosine (C). What is the bonding scheme in RNA?
A-C and G-U
A-G and C-U
A-U and C-G
A-T and C-G
None of these
Correct answer:
A-U and C-G
Explanation:
In RNA, thymine is substituted by uracil. So adenine will bond to uracil instead of thymine when RNA interacts with DNA and when RNA folds with itself to make a 3-dimensional structure.
Which of the following molecules is not present in DNA?
Thymine
Uracil
Deoxyribose sugar
All of these
Phosphate
Correct answer:
Uracil
Explanation:
Uracil is a nitrogenous base that is only found in single-stranded RNA—it is not found in DNA. Thymine pairs with adenine in DNA, whereas in RNA, uracil pairs with adenine.
Which of the following base pairs is found only in RNA?
Thymine
Uracil
Adenine
Guanine
Cytosine
Uracil
Explanation:
Uracil is the base pair that is used in ribonucleic acid (RNA) in the place of thymine. The other three bases adenine, guanine and cytosine are found in both DNA and RNA.
All of the following bases are found in RNA except __________.
uracil
guanine
cytosine
adenine
thymine
Correct answer:
thymine
Explanation:
Uracil is only found in RNA under normal conditions. It replaces thymine, which is only found in DNA. Therefore, thymine, adenine, cytosine, and guanine are the bases found in DNA, and uracil, adenine, cytosine, and guanine are the bases found in RNA.
Who were the two scientists who developed the model of DNA as a double helix in 1953?
Pauling and Corey
Pasteur and Mitterand
Gilbert and Maxam
Watson and Crick
Watson and Crick
Explanation:
Watson and Crick were the two scientists who developed the model of DNA as a double helix in 1953.
In the messenger RNA, with which base on DNA does uracil pair?
Cytosine
Thymine
Guanine
Adenine
Adenine
Explanation:
Uracil in RNA bonds to adenine on the DNA template during transcription. These two nitrogenous bases form two hydrogen bonds.
What would be the sequence of mRNA translated from the DNA segment 5’ - ACGTCA - 3’ ?
5’ TACTTU 3’
5’ UGCAGU 3’
5’ TGCAGT 3’
5’ UCGAGU 3’
5’ UGACGU 3’
Correct answer:
5’ UGACGU 3’
Explanation:
mRNA contains uracil instead of thymine, therefore your answer should not contain the base thymine. Remember, DNA is read in the 3’ to 5’ direction and the corresponding strand is created in the 5’ to 3’ direction. It is important to pay attention to polarity of the strands. Adenine pairs with thymine, and/or uracil. Guanine pairs with cytosine.
Which of the following RNA molecules transports amino acids to ribosomes to be used to assemble the protein molecule?
rRNA
snRNA
mRNA
pre-mRNA
tRNA
Correct answer:
tRNA
Explanation:
mRNA is messenger RNA, it carries the genetic code that determines the protein. snRNA directs splicing of pre-mRNA. tRNA transports the amino acids used for assembling proteins. rRNA is a component of ribosomes (the other component is protein). pre-mRNA- single strand of RNA processed to form mRNA.
The most prevalent negative charge on DNA can be found on which of the following molecular components?
Hydroxyl residues
Ribose sugar ring
Hydrogen bonds between base pairs
Phosphate backbone
Phosphodiester linkage
Phosphate backbone
Explanation:
The phosphate backbone of DNA is negatively charged due to the bonds created between the phosphorous atoms and the oxygen atoms. Each phosphate group contains one negatively charged oxygen atom, therefore the entire strand of DNA is negatively charged due to repeated phosphate groups.