DNA Metabolism Part 2 Flashcards

1
Q

Is damage to RNA and proteins major?

A

no

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2
Q

Where can DNA damage come from?

A
  1. chemical agents
  2. environmental factors
  3. errors during replication
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3
Q

Lesion

A

unrepaired DNA damage

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4
Q

substitution mutation

A

switch bases

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5
Q

insertion mutation

A

add extra nucleotide

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6
Q

deletion mutation

A

skip/miss a nucleotide

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7
Q

silent mutation

A

mutations in non essential DNA or with no effect on gene function

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8
Q

most mutations are?

A

neutral or deleterious

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9
Q

What does an accumulation of mutations correlate with?

A

cancer

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10
Q

What percentage of compounds shown to cause cancer are mutagenic?

A

90%

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11
Q

Because of repair mechanisms less than x in 1000 become mutations?

A

1

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12
Q

Is DNA repair energetically efficient?

A

yes

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13
Q

DNA Repair Systems

A

mismatch
base excision
nucleotide
direct

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14
Q

Mut L/ Mut S complex

A

looks for a mismatch in mismatch repair

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15
Q

Mut H

A

cuts the new strand in mismatch repair

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16
Q

DNAP iii

A

remakes DNA cut out in mismatch repair

17
Q

DNA ligase

A

seals the nick

18
Q

What would cause an altered base?

A

methylation
alkylation
deamination

19
Q

DNA glycosylase

A

cuts the modified base out in base excision repair

20
Q

AP endonuclease

A

cuts the backbone in base excision repair

21
Q

What does DNA Polymerase 1 do in base excision repair?

A

clear out DNA around the abasic site and remakes the DNA segment

22
Q

Nucleotide Excision Repair

A

fixes lesions that cause large distortions
excinuclease cut up and downstream
DNA helicase removes damaged part
DNA polymerase remakes DNA
DNA ligase seals the nick

23
Q

DNA methyltransferase

A

repair methylation on G
methylation of this permanently inactivates it
single use
type of direct repair

24
Q

Oxidative demethylation

A

allows for demethylation of A and C
requires alpha ketoglutarate
methyl leaves as formaldehyde

25
Q

Photodamage repair

A

FADH donates electrons
nucleotide dimer radical falls apart and forms 2 pyrimidines
electron goes back to FADH