D1.3 Mutations and Gene Editing Flashcards

mutation types, mutagens, loci, knockout, diseases, CRISPR

1
Q

mutations

A

random, rare change in DNA, some have no effects

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

types of mutations

A

substitutions, deletions, insertions, point mutation (1 nucleotide modified)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

locus

A

fixed position of a gene on a chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

achromatopsia

A

mutation of GNAT2 gene on chromosome 1, which controls production of protein transducin, which enables colour vision

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

genome

A

all DNA in the nucleus and mitochondria of an animal cell

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

phenotype

A

observable qualities based on genotype and environment

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

polymorphism

A

occurrence of two different phenotypes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

genotype

A

combination of alleles inherited, codes for phenotype

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

single-nucleotide polymorphism

A

substitution point mutation, results in alleles and explains some diseases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

missense mutation

A

substitution mutation that results in 1 different amino acid coded for

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

nonsense mutation

A

substitution mutation that results in stop codons

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

what causes sickle cell disease and what are its effects?

A

substitution mutation of gene for haemoglobin results in valine amino acid to be produced instead of glutamic acid, causes red blood cells be shaped like sickles and weakness, fatigue, shortness of breath, and malaria resistance

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

what causes huntington’s and what are its effects?

A

insertion mutation when trinucleotide repeat expansion of CAG results in HTT gene on chromosome 4 becoming mHTT gene, causing more glutamine production and trouble walking, speaking, and holding

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

only under what conditions does huntington’s show?

A

after 40 years old and when there are over 40 repeats of CAG

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

trinucleotide repeat expansion

A

when a set of 3 nucleotides repeats, expanding the polysaccharide region

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

frameshift mutation

A

when insertions/deletions occur in non-multiples of 3, altering entire sequence

17
Q

chemokine

A

chemicals that tell leucocytes where an infection is, picked up by leucocyte receptors

18
Q

what forms leucocyte receptors?

A

co-receptor molecule C-C chemokine receptor type 5

19
Q

how does HIV-1 infect an individual?

A

enters CD4 leucocytes through receptors, so those with working CCR5 genes on chromosome 3 are at risk; if it destroys the leucocytes, it becomes AIDS

20
Q

what mutation makes an individual resistant to HIV-1?

A

delta 32 mutation (CCR5-∆32) deletes 32 nucleotides, creating a stop codon for the gene CCR5, preventing formation of receptor

21
Q

what are mutagens and some examples?

A

chemicals that cause mutations (eg enzymes that transform bases, benzene that causes leukaemia)

22
Q

what can cause mutations?

A

mutagens and radiation

23
Q

what percentage of DNA is actually coding?

24
Q

example of non-coding DNA

A

satellite DNA found in centromere, structural purposes; much more likely to be mutated than coding DNA (1 every 1000 base pairs vs 1 every 500 mil)

25
example of mutation hotspot
CpG sites, where cytosine followed by guanine; if C replaced by T during methylation, cancer occurs
26
germ cell
uses meiosis to produce gametes; mutations passed down
27
somatic cell
uses mitosis to grow tissues and organs; mutations not passed down
28
germ line
group of all cells involved in reproduction
29
gene knockout
functional gene rendered unusable to observe effects on knockout organism
30
how does CRISPR-Cas9 work?
1. guide RNA that matches DNA is synthesized, Cas9 enzyme injected into cells 2. gRNA binds to DNA, protospacer adjacent motif binds Cas9 to DNA 3. Cas9 cuts of mutation and it's replaced, discarded, corrected, or rendered inactive by errors
31
what is CRISPR-Cas9 good for?
genetic engineering, curing diseases, increasing crop yield, fuel production, gene therapy/drive
32
gene drive
modifying genes to increase chance of gene being passed on so lab genes spread quickly; capable of stopping malaria, dengue fever, west nile virus in mosquitoes
33
(highly) conserved sequences
show minimal/no changes, required for replication, transcription, translation, respiration
34
purifying/negative selection
eliminating harmful gene variations by natural selection
35
what factors influence mutation rates?
requirement for gene (functional constraint hypothesis), slower rates of mutation hypothesis (eg non-coding zones have higher rate due to lack of proofreading)