Chapter 4: PARACRINE Mechanisms of Morphogenesis Flashcards

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1
Q

Paracine signalling: when proteins from one cell diffuses across a ___ distance to induce changes in other cells, through the secretion of signalling proteins (ligands) in EXM

A

SHORT distance.

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2
Q

___ signalling: cells that secrete the paracrine factors also respond to them through their own receptors. The factor released from the cell induces changes on the same cell that releases it

A

autocrine signalling.

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3
Q

Placental cytotrophoblast cells use ____ signalling. They secrete platelet-derived growth factor, whose receptor is on the cytotrophoblast cell membrane. The rsult is the explosive proliferation of that tissue

A

autocrine signalling.

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4
Q

morphogen

A

diffusable molecules that determine the fate of cells via concentration gradients.

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5
Q

Note; dif transcription factors are turned on at different concentrations of the same morphogen.

A

when morph conc is high, the cells are specified to one cell type. When morph drops to very high, a dif cell fate is specified.

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6
Q

Explain how the same morphogen can induce differentiation into dif cells in amphibian cells

A

cells in amphibians contain different concentrations of activin: TGFbeta family paracrine factor.

  • low [activin] = Xbra gene expression is activated. triggers gene transcription for muscle growth. also produces brachyury to inhibit goosedoid.

high [activin]: INDUCES goosecoid. Causes gene expression that forms dorsal structures.

therefore, different concentrations of the same morphogen produce and inhibit different genes and result in the formation of different cells and tissues.

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7
Q

the paracrine factor often binds as a ____ to its receptor, which starts a cascade of events within the cell that ultimately regulates a response

A

ligand. The ligand induces a conformational change in the receptor.

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8
Q

In RTKs, ligand/paracrine factors induces ___ activity IN the receptor that allows the receptor to phosphorylate ___ resides on proteins. Binding of a ligand causes RTKS to___

A

In RTKs, ligand/paracrine factors induces KINASE activity IN the receptor that allows the receptor to phosphorylate TYROSINE resides on proteins.

  • the receptor-ligand autophosphorylates itself, activating it to become another kinase for other proteins.
  • the active receptor can now catalyze reaction sthat phosphrylate other proteins, and this phosphorylation in turns activates their latent activation. Further down, phosphorylation activates dormant TFs, or a set of cytoskeletal proteins.

Binding of a ligand causes RTKS to dimerize

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9
Q

4 primary paracrine families

A

1) FGF
2) WNT
3) hedgehog
4) TGFbeta super family. (TGFbeta, BMP, Nodal, VgF1, Activin)

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10
Q

Functions of FGF1, FGF 2, FGF7, FGF8

A

FGF1: regeneration
FGF2: blood vessel formation
FGF7: keratinocyte growth factor
FGF8: Embryonic development.

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11
Q

FGF paracrine factors activate FGFR’s, which are a type of:

A

receptor tyrosine kinase.

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12
Q

When FGF binds to FGFR (an RTK), what does it also bind to? Why?

A

a heparan sulfate proteoglycan, for stability.

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13
Q

Outline the cascade seen when FGF (fibroblast growth factor) binds to FGFR.

A

*FGFR is a type of RTK.

1) RTK binds to FGF ligand and HSPG for stability
2) RTK(FGFR) homodimerizes
3) RTK dimers autophosphorylate themselves on their tyrosine residues, activating the dimer
4) SOS(adapter protein) recognizes the autophosphorylated RTK dimer, and activates GEF, connecting the dimer to GEF and the rest of the intracellular signalling system.
5) GEF exchanges RAS-GDP for Ras-GTP.
- - in a counter system, Ras-GTP is later de-phosphorylated by GAP to re-form Ras-GDP.
6) Ras-GTP activates RAF kinase.
7) RAF kinase phosphorylates MEK
8) MEK-P phosphorylates ERK
9) ERK-P enters the nucleus and phosphorylates TFs that belong to the Pea3 family.
10) these activated TFs regulate gene expression, resulting in the further cell division and protein synthesis regulation.

  • TF activation is stopped when GAP exchanges Ras-GTP for Ras-GDP, so Ras can no longer activate Raf.

Cascade: RTK(dimer)–> GEF –> RasGTP –> RafP –> Mek –> erk –> TF (Pea3) activation –> Gene expressions via transcription.

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14
Q

When does fibroblast growth factors stop signalling for gene transcription via transcription factor activation?

A
  • TF activation is stopped when GAP exchanges Ras-GTP for Ras-GDP, so Ras can no longer activate Raf.
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15
Q

Outline the FGF paracrine factor cascade via the Jak-Stat pathway

A

1) FGF/prolactin binds to RTK (FGFR), which also has JAK bound it its intracellular side.
2) Ligand binding to RTK-Jak causes dimerization and autophosphorylation.
3) RTK-Jak dimerization activates the receptor. It then phoshphorylates STAT.
4) STAT-P dimerizes
5) STATP Dimer enters nucleus and binds to Casein gene. Activates transcription of casein gene. Facilitates milk production via prolactin production.

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16
Q

What is the stat pathway involved in

A

1) activation of casein during milk production
2) differentiation of blood cells
3) growth of limbs.

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17
Q

3 types of hedgehog paracrine factors vertebrates have

A

1) SHH: ensures neurons are derived from ventral portion of neural tube, ensures feathers are positioned properly in chickens, ensures that our little finger is posterior
2) DHH: found in sertoli cells
3) Indian HH: found in gut and cartilage. Important for bone growth.

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18
Q

After being translated in the ER, how do hedgehog proteins get directed to the cell membrane for release as a paracrine factor?

A

Hedgehog secretion autoproteolytically cleaves its C-terminus sequence to allow it to be directed to the cell membrane.

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19
Q

After the HH paracrine factor autoproteolytically cleaves its C terminus, what modifications occur? Why?

A

cholesterol and palmitic acid are required for multimeric assembly. Lipid additions are required for concentration-dependent maintenance of HH.

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20
Q

___ (lipid type) on HH interacts with ___ to allow HH to be secreted as a monomer

A

CHOLESTEROL (lipid type) on HH interacts with DISPATCHED RECEPTER to allow HH to be secreted as a monomer.

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21
Q

HH INTERACTS WITH ___ ____ ___ (HSPG) TO ALLOW FOR AGGREGATION IN ___ STRUCTURES

A

HH INTERACTS WITH HEPAREN SULPHATE PROTEOGLYCANS (HSPG) TO ALLOW FOR AGGREGATION IN LIPOPROTEIN STRUCTURES

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22
Q

In order for HH to be secreted as a multimer, what is required?

A

palmitic acid and cholesterol additions on HHs link together to link all HH on the membrane.

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23
Q

4 ways Hedgehog paracrine factor can be secreted from host cell

A

1) monomer (via cholesterol-dispatched)
2) multimer (via cholesterol-palmitic acid)
3) lipoprotein (via heparin sulphate proteoglycan)
4) exovesicle.

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24
Q

Outline the innate pathway that exists when no HH is present.

A

If no HH is present, Patched receptor will continue to inhibit Smoothened, resulting in its degradation.

  • because there is no Smoothened action, Ci(drosophila)/Gli(humans) remain tethered to the microtubules of the responding cell.
  • Ci/Gli is bound to the MTs through Cos2/Kif7, Fused (only in drosophila) and Sufu.
  • while Ci/Gli is bound to MT, it gets cleaved by PKA and Slimb (only in Drosophila) complex. A portion of Ci/Gli enter the nucleus. The Ci/Gli portion acts as a TRANSCRIPTIONAL REPRESSOR.
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25
Q

Outline the pathway when HH is present

A
  • HH binds to Patched Receptor. In drosophila, Boi and Ihog help bind. In humans, Gas1 and Boc help enhance the signalling.
  • Patched receptor gets inhibited and degraded via endocytosis and then ubiquination.
  • Smoothened is no longer being inhibited.
  • smoothened phosphorylates Ci/Gli, and Ci/Gli gets released from the microtubule/Cos2/Sufu/Fused complex.
  • Ci/GLI does NOT get cleaved by PKA/Slimb complex because it got inactivated when Ci/Gli was released from the microtubules. It enters as a WHOLE into the nucleus and activates the genes that CLEAVED Ci/Gli usually represses.
26
Q

HH binds to Patched. In drosophila, ___ and ___ help bind. In humans, ___ and ___ help enhance the signalling

A

HH binds to Patched. In drosophila, Boi and Ihog help bind. In humans, Gas1 and Boc help enhance the signalling

27
Q

In the HH pathway, drosophila contain ____ and ____ proteins that humans do not.

A

drosophila contain Fused (helps anchor Ci to the microtubule with Cos2 and Sufu)

Drosophila also contain slimb (helps PKA cleave Ci).

Therefore, in humans, Only Cos2 and Sufu help bind Gli to microtubule, and only PKA cleaves Gli when HH is not present.

28
Q

4 things the WNT paracrine family is involved in

A

1) establishes limb-polarity in insects and vertebrates
2) proliferation of stem cells
3) mammalian urogenital system in embryo
4) guides the migration of mesenchymal cells**–> mesenchymal cells release from the epiblast to develop mesoderm structures.

29
Q

what enzyme is responsible for Wnt modification in the ER? What is added and why is it important?

A

O-acetyltransferase PORCUPINE adds palmitic and palmitoleic acid to Wnt in the ER. lipid addition is necessary for transport to the plasma membrane. No lipid modification = stuck in ER.

30
Q

dif mehods of Wnt secretion

A

1) exosome
2) monomer diffusion
3) lipoprotein assembly.
same as hedgehog release.

31
Q

upon secretion, Wnt proteins associate with ____in the ECM to restrict diffusion and leads to greater accumulation of Wnt closer to the source of production

A

Wnt proteins associate with Glypicans to prmote greater accumulation of Wnt closer to the source of production

32
Q

On the responding cell, Lpidated Wnt binds to ____ receptor and ___. What does regulatory mechanism does this trigger?

A

Frizzled Receptor and LRP5/6. Frizzled triggers production of Notum. Notum is a hydrolase that cleaves off Wnt’s attached lipids via deacylation. Reduces Wnt signalling bc lipids are required. Notum creates a NEGATIVE feedback loop to prevent excess Wnt signalling.

33
Q

3 Methods Wnt gradients are established

A

1) Dif models of Wnt secretion
- exosome
- monomer diffusion
- lipoprotein assembly

2) glypican-mediated restriction
3) secreted ligand inhibitors (Notum)–> negative feedback. Wnt induces the production of its own repressor.

34
Q

the canonical Wnt pathway is ______ (a TF) dependent

A

Beta-catenin dependent.

35
Q

without Wnt, BetaCatenin interacts with ___/___/___ complex that targets it for degradation. How does it do this? What is the end effect of not having Wnt?

A

without Wnt, BetaCatenin interacts with GSK3/ABC/Axin complex that targets it for degradation.

Without Wnt, GSK3 phosphorylates betacatenin to target it for ubiquination.

No Wnt = no activation of Wnt-responsive genes due to the TCF TF acting on the genes and recruiting a histone deacetylase, preventing transcription. If Wnt was present, Betacatenin would bind to TCF and allow for transcription.

36
Q

When Wnt is present, It binds to LRP5/6 and Frizzled, forming a _____.
Formation of this ___ allows LRP5/6 to bind ___ and ___. Frizzled binds to ____.

A

When Wnt is present, It binds to LRP5/6 and Frizzled, forming a MULTIMERIC PROTEIN STRUCTURE.
Formation of this MULTIMER allows LRP5/6 to bind AXIN and GSK3. Frizzled binds to DISHEVELED (DVL).

-RECALL: GSK3 and AXIN is part of a complex that usually helps with ubiquination and degradation of betacatenin. When LRP5/6 binds to GSK3 and Axin, they get deactivated and they can no longer inhibit beta catenin. Beta catenin is thus allowed to act on the nuclear TCF TF’s, promoting gene transcription.

37
Q

In Wnt Pathway: When LRP5/6 is activated by Wnt and then binds GSK3 and Axin, what happens?

A

it keeps GSK3 and Axin on the intracellular membrane surface and prevents GSKS 3 from phosphorylating BetaCatenin (for degradation).

BetaCatenin now enters the nucleus and bind to TCF-TF. Converts it into a transcriptional activator rather than a repressor. Wnt responsiveness genes can now be activated/transcribed.

-in both Wnt and HH pathways, activation is accomplished by inhibiting an inhibitor.

38
Q

The canonical Wnt pathway induces ___ ____whereas the noncanonical Wnt pathway induces ___ and ___

A

The canonical Wnt pathway induces GENE TRANSCRIPTION whereas the noncanonical Wnt pathway induces CHANGES IN CELL SHAPE AND FUNCTION

39
Q

2 types of noncanonical Wnt pathway

A

1) planar cell polarity

2) Wnt/Calcium pathway

40
Q

planar cell polarity noncanonical Wnt pathway regulates:

outline the pathway

A

actin and microtubule cytoskeleton.

  • PCP influences cell shape and allows for cell migration.
  • Wnt (5 and 11) binds to Frizzled and ROR instead of LRP5/6. Ror phosphorylates Disheveled, which allows ROR to interact with a RhoGTPASE.
  • RorGTPase can activate JAK for gene regulation.
  • OR it activates cytoskeletal binding proteins to remodel cytoskeleton elements
41
Q

In the planar cell polarity pathway, instead of binding to LRP5/6 what does Wnt bind to with Frizzled

A

ROR

42
Q

After RHoGTPASE interacts with activated ROR(when Wnt binds to it), what 2 things can it accomplish?

A

1) RhoGTPase can activate JAK, which induces gene transcription
2) RhoGTPase can activate cytoskeletal binding proteins.

43
Q

Outline the noncanonical Wnt/Calcium pathway

A
  • WNt/Ca2+ pathway facilitates Ca2+ release from cells to act as a 2ndary messenger.
  • Wnt binds to Ryk with Frizzled. Ryk and Frizzled activates PLC, which facilitates the release of a compound that releases Ca2+ ions from SER.
  • Ca2+ activates enzymes, TFs and translational factors to result in Ca2+-dependent gene expression.

*PLC activation –> PIP2 –> IP3 pathway. IP3 binds to a Ca2+ channel to allow Ca2+ release into the cytoplasm.

44
Q

in the Wnt/Ca2+ pathway, instead of LRP5/6, what does it bind with with Frizzled?

A

in the Wnt/Ca2+ pathway, Wnt binds with Frizzled and Ryk

45
Q

List 4 types of transcription factors that are under the TGFbeta Super family

A

1) TGFbeta
2) Activin
3) BMP
4) Nodal

46
Q

Purpose of TGFbeta (1,2,3 and 5)

A
  • Increases ECM formation
  • stimulates collagen and fibroblast synthesis
  • inhibits matrix degradation
  • regulates cell div
  • creates the branch points where epithelial regions begin to form ducts.
47
Q

Structural difference between BMP and TGFbeta Paracrine factos of the TGFB Super family

A

BMP only has 7 cysteines in a polypeptide, but TGFBeta has 9

48
Q

Role of BMP7

A

important for neural tube polarity, kidney dvelopment and sperm formation

49
Q

Role of BMP 4

A

causes BONE FORMATION and specifies epidermis sometimes. Responsible for appendage formation in drosophila.

50
Q

BMPS work through ___ by ccells that produce them

A

work through diffusion by cells that produce them.

51
Q

___ and ___ bind directly to BMPS to INHIBIT BMP receptor binding

A

NOGGIN and CHORDIN inhibit BMP receptor binding.

52
Q

Role of the Nodal/Activin family in the TGFBeta Superfamily. What does the concentration gradient of this family induce?

A
  • specifies different regions of mesoderm. (recall/ in amphibians, Activin concentrations can induce Xbra gene to create muscle).
  • distinguishes left and right sides of the vertebrate using a nodal concentration gradient. Nodal gradient is formed RIGHT TO LEFT. Gradient created by beating cilia that promotes the graded nodal flow.
53
Q

Outline the SMAD pathway that utilizes different TGFBeta Superfamily Ligands

A

1) TGFBETA SF ligand binds to TYPE II TGFB RECEPTOR,
2) Type II activates Type 1 receptor.
3) type II and Type 1 TGFBR come together and phosphorylate Type 1.
4) Phosphorylated Type I TGFBSF-R phosphorylates SMAD.
- SMAD 1 and 5 is activated by BMP fam of TGFBSF
- SMAD 2 and 3 is activated by Nodal and Activin and TGFB or the TGFBSF.
5) SMG1/2/3/5 binds with SMAD 4
6) Forms transcriptional factor complexes that enters the nucleus.

54
Q
  • SMAD 1 and 5 is activated by ___fam of TGFBSF

- SMAD 2 and 3 is activated by ___ and __ and ___ families of the TGFBSF

A
  • SMAD 1 and 5 is activated by BMP fam of TGFBSF

- SMAD 2 and 3 is activated by Nodal and Activin and TGFB

55
Q

Rather than using growthfactors/ proteins for cell communication, sometimes, cells protrude/physically reaches out and presents the signal with a focal membrane protrusion known as a ___ ___

A

filopodial cytoneme: projections that stretch out from the signal-producing cells or the responder cell to pass a signal.

  • receptor and ligand would bind at the tips of the cytoneme. Receptor/ligand complex is transported down the length of the cytoneme to the target/responder cell body.
  • the cytoneme often carries morphogens.
56
Q

Explain the filopodial cytoneme used in the drosophila air sac primordium formation in wing disk

A

Cytoneme-mediated morphogen signaling is seen in the development of the air sac and wing disc in Drosophila. A cluster of cells called (ASP) develops along the BASAL surface of the wing disc in response to DPP (a BMP homologue) and FGF morphogen gradients in the wing disc.

ASP cells EXTEND CYTONEMES toward the DPP- and FGF-expressing cells in the wing disk, these ASP cytonemes contain receptors for these morphogens—separate receptors in separate cytonemes.

DPP (from wing disk) bound to its receptor on ASP cells has been documented to travel along the ASP cytoneme TO the ASP cell body.

57
Q

How is anterior-posterior orientation of the Wing Disc in drosophila controlled by filopodial cytoneme projections?

A

Hedgehog coming from the POSTERIOR CELLS is delivered THROUGH Anterior CYTONEMES that extend FROM the basolateral surface of ANTERIOR CELLS to the HH-producing POSTERIOR CELLS.

-therefore, receptors go TO the source of the paracrine factor.

58
Q

T/F: Juxtacrine factors remain attached to inducer cell membrane

A

true. They exert effects to neighboring cells.

59
Q

Notable juxtacrine factor proteins

A

1) notch protein
2) cadherin
3) eph receptors and Ephrin ligands

60
Q

Is Notch a Juxtacrine or paracrine factor

A

Juxtacrine. It is in the inducer cell membrane. Activation of Notch receptor by a neighborign cell results in gene transcription

61
Q

Outline the Notch pathway

A

1) notch receptor in membrane binds to delta in the membrane of a neighboring cell.
2) Notch-delta binding results in conformationational change.
3) Presenilin-1 protease cleaves the intracellular domain of Notch.
4) cleaved Domain floats to nucleus. It binds to CSL, a TF. the Cleaved notch domain displaces the repressor that was on CSL, and with the help of other proteins, such as P300, target genes are activated.

Notch-delta–> Presinilin1 cleaving –> Notch domain –> Displace repressor on CSL –> Recruitment of P300 to CSL –> transcription.