Chapter 3 Flashcards
organic molecules
molecules based on carbon
inorganic molecules
substances without carbon atoms in their structure
hydrocarbons
molecules consisting of carbon linked only to hydrogen
functional group
reactive groups of atoms
hydroxyl
consists of an oxygen atom linked to a hydrogen atom on one side
polars
alcohols
carbonyl
consists of an oxygen linked to a carbon by a double bond
oxygen atom is very reactive
aldehydes; ketones
carboxyl
combination of a carbonyl and hydroxyl group
characteristic functional group of organic acids for energy generating reactions in living organisms
amino
nitrogen bonded on one side by two hydrogen atoms
acts as an organic base
phosphate
central phosphorous atom held in four linkages
two are -oh
one is double bond with o
one is single bond with o
sulfhydrl
sulfur linked to a hydrogen
isomer
molecules that have the same chemical formula but different molecular structures
enantiomers/optical isomers
isomers that are mirror images
structural isomers
molecules of same chemical formula but atoms are arranged in different ways
dehydration
when components of water molecule are removed
hydrolysis
when components of water are added to the function groups as molecules are broken into smaller subunits
glycogen
energy providing carbohydrates in animal cells
starch
energy providing carbohydrates in plant cells
cellulose
one of the primary constituents of plant cell walls made of chains of carbohydrate subunits
monosaccarides
smallest carbohydrates that contant 3-7 carbon atoms
polysaccarides
10 or more linked monosaccarides
glycosidic bonds
bonds between the number 1 carbon and the 4 carbon of a second glucose unit which link monosaccarides
neutral lipids
found in cells as energy storage molecules
insoluble in water
fatty acids
single hydrocarbon chain with a carboxyl group at one end
saturated fatty acid
max number of hydrogen
unsaturated fatty acid
one or more double bonds between c atoms
monounsaturated
one double bond
polyunsaturated
more than one double bond
triglyceride
fatty acids bind by dehydration synthesis at each of a glycerols
waxes
fatty acids combined with long-chain alcohols or hydrocarbon structures
phospholipids
phosphate containing lipids
primary lipids of cell membranes
half polar half nonpolar
steroids
lipids with structures based on framework of 4 carbon rings
sterols
most abundant steroids that have a single polar -oh group at one end
cholesterol
in boundary membrane surrounding animal cells
phytosterols
in plant membranes
enzymes
increase the rate of cellular reactions
amino acids
molecule that contains both an animo group and a carboxyl group
peptide bond
formed by dehydration synthesis between NH2 of one amino acid to the cooh group of another
n-terminal end
part of amino acid where nh2 is located
c terminal end
part of amino acid chain when cooh is located
polypetide
series of peptide bonds
primary structure
particular and unique sequence of amino acids
secondary structure
produced by twists and turns of the amino acid chain
tertiary structure
folding of amino acid into 3d shape
quaternary structure
when polypetide chain is formed from more than one chain
alpha helix
backbone is twisted into a right hand spiral
side groups extend from backbone
h bonds between atoms in backbone
beta sheet
chain zigzags in a flat plane
h bonds between adjacent strands stabilize sheet
random coil
irregularly folded arrangement
allows proteins to fold back on themselves
conformation
tertiary structure or its overall 3d shape
denaturation
unfolding a protein from its active conformation so that it loses structure and function
renaturation
opposite of denaturation
chaperone proteins/chaperonins
temporarily bind with newly synthesized proteins guiding them to the proper conformationa nd tertiary structure
conformation changes
undergoing limited alterations in 3d shape
domains
large structural subdivisions folding of the amino acid chain
motifs
highly specialized regions produced by 3d arrangement of amino acid chains within and between domain
dna
stores hereditary information responsible for inherited traits in all eukaryotes and prokaryoes and a large number of viruses
rna
hereditary molecule of a large group of viruses
carries instructions for assembling protein for dna to the sites where protein are made in the cell
nucleotide
monomer of nucleic acids consisting of: pyrimides: one carbon nitrogen ring purines: two nitrogen carbon rings five carbon ring shaped sugar one to three phosphate groups
deoxyribose
5 carbon sugar to which a nitrogenous base and a phosphate group link covalently
ribose
5 carbon sugar to which the nitrogenous bases in nulceotides link covalently
nucleoside
structure containing only a nitrogenous base and 5 carbon sugar
phosphodiester bond
bridging the phosphate group from 5 of one sugar with the 3 carbon of another
double helix
two nucleotide chains wrapped around each other in a spiral
template
nucleotide chain used in dna for the assembly of the complementary chain