Chapter 13 Flashcards
Viruses
What are distinctive features of viruses
- Contain a single type of nucleic acid either DNA or RNA
- Contain a protein coat that surrounds the nucleate acid
- Multiply inside living cells by using the synthesizing machinery of the cell
- Causes the synthesis of specialized structures that can transfer the viral nucleic acid to other cells.
The protein coat of a virus that surrounds the nucleic acid sometimes is enclosed by
an envelope made up of lipids, proteins and carbohydrates
How were viruses originaly distinguished from other infectious agents
They are especially small in size, filterable, and they are obligatory intracellular cellular parasites
Do viruses generate their own metabolism
Viruses have few or no enzymes of their own for metabolism, they lack enzymes for protein synthesis and ATP generation
How do viruses multiply
To multiply viruses take over the metabolic machinery of the host cell
Host range
The host range of a virus is the spectrum or variety of host cells the virus can infect.
What are examples of the host range of viruses
Some viruses can infect invertebrates, vertebrates, plants, protists, fungi, and bacteria. Most viruses infect specific type of cells of only host species. Rarely, viruses cross the host-range barrier.
Bacteriophages
Aka phages. Viruses that infect bacteria.
What is required for the virus to infect a host cell
For the virus to infect a host cell, the outer surface of the virus must chemically interact with specific receptor sites on the surface of the host cell.
Where are receptor sites on host cells
It can be part of the cell wall of the host, it can be part of the fimbriae or flagella, for animal viruses the receptor sites are on the plasma membrane of the host cells
Virus size range
20 to 1000 nm in length
Virion
A complete, fully developed, infectious viral particle composed of nucleic acid, and surrounded by a protein coat, and is a vehicle of transmission from one host cell to another.
How are viruses classified
Based on their nucleic acid and by differences in the structures of their coats
Describe the nucleic acid of a virus
It has either DNA or RNA, never both. The nucleic acid can be single stranded or double stranded. It can be linear, or circular, or in several separate segments.
Capsid
A protein coat that protects the nucleic acid of a virus. It accounts for most of the mass of a virus.
What determines the structure of the capsid
The nucleic acid
Capsomeres
Protein subunits that compose the capsid. The protein subunits are of a single type or can be made of several types of protein.
How do capsomeres help identify a virus
Their arrangement is characteristic of a particular type of virus
Envelope
Some viruses have this, which covers the capsid and is usually made up of a combination of lipids, proteins, and carbohydrates
Animal viruses released from the host cell by an extrusion process have an envelope that is made up of
The extrusion process coats the virus with a layer of the host cell’s plasma membrane, that layer becomes the viral envelope. In some cases, the envelope contains proteins determined by the viral nucleic acid and materials derived from the normal host cell components .
Sometimes the envelopes are covered by
Spikes made up of carbohydrate-protein complexes (glycoprotein) that project from the surface of the envelope.
How are spikes beneficial to viruses
They allow viruses to attach to host cells
What advantages do spikes have for identification of a virus
They can cause viruses to bind to RBCs and form bridges resulting in clumping. This is the basis for several useful laboratory tests.
Hemagglutination
The clumping of red blood cells.
What would you call viruses whose capsids are not covered by an envelope
Nonenvelope viruses (naked virus)
How is a nonenveloped virus protected
The capsid protects the nucleic acid from nuclease enzymes in biological fluids and promotes the virus’s attachment to susceptible host cells.
How is it that some viruses can escape antibodies and prevent their inactivation
This is due to regions of the genes that code for these virus’s surface proteins that are susceptible to mutations. Their progeny have altered surface proteins and antibodies are not able to react with them.
What are general morphology types of a virus
- Helical
- Polyhedral
- Enveloped
- Complex
Helical viruses
Long rods that may be rigid or flexible, nucleic acid is found within a hollow cylindrical capsid that has a helical structure
Example of helical virus
Rabies and ebola haemorrhagic fever
Polyhedral virus
Many sided shape, an icosahedron, a regular polyhedron with 20 triangular faces and 12 corners. The capsomeres of each face form an equilateral triangle
Example of polyhedral virus
Adenovirus and poliovirus
Enveloped virus
Roughly spherical. Helical or polyhedral.
Examples of enveloped viruses
Envelope polyhedral–> herpes simplex virus
Enveloped helical–> influenza virus
Complex viruses
Some viruses, particularly bacterial viruses have complicated structures.
Example of a complex virus structure
Bacteriophage. Some have capsids to which additional structures are attached. Capsid head is polyhedral and the tail sheath is helical. Head contains the nucleic acid.
Example of a complex virus
Poxviruses
The International Committee on Taxonomy of Viruses groups viruses into families based on
Genomics and structure with the help of DNA sequencing
What suffix is used for genus names
-virus
Family names end in
-viridae
Order names end in
-ales
In formal usage, in what order are family and genus, viral species, and subspecies names used, example
FAMILY–> Herpeaviridae,
GENUS–> Simplexvirus,
Viral species–> human herpesvirus
Subspecies–> 2
Viral species
A group of viruses sharing the same genetic information and ecological niche (host range). Common names are used for species.
Subspecies
Different strains are designated by a number.
Spikes are
Also called peplomeres. They are made up of glycoproteins; proteins linked to sugars known as hemagglutinin (HA) and neuramidase (NA).
Where has much of our understanding about viruses come from
Bacteriophages, viruses that use bacteria as a host.
Where can bacteriophage be grown in the lab
Suspensions of bacteria in liquid media or in bacterial cultures on solid media.
What is made possible by growing bacteriophages on solid media
The plaque method for detecting and counting viruses
How would you perform the plaque method
A sample of bacteriophage is mixed with host bacteria and melted agar. This is then poured into a petri plate containing a hardened layer of agar growth medium. The mixture solidifies into a thin top layer that contains a layer of bacteria approximately one cell thick.
How do plaques form
Each virus infects a bacterium, multiplies, releases several new viruses that infect other bacteria in the immediate vicinity. After several viral multiplication cycles all the bacteria surrounding the original virus or destroyed. This produces a number of clearing or plaques visible against a lawn of bacterial growth on the surface of the agar.
Each plaque corresponds to
A single virus in the initial suspension
PFU
Plaque forming units, the concentration of viral suspension measured by the number of plaques
The most important taxonomic criteria are
- Host organism
- Particle morphology
- Genome type
Nucleic acid classification
- RNA viruses; single stranded or double stranded
2. DNA viruses; single stranded or double stranded
Subcategories of RNA viruses
- Positive strand
- Negative strand
- Retrovirus
Animal inoculation with a virus is used as a
Diagnostic procedure for identifying and isolating a virus in the clinical specimen. The animal is observed for signs of disease or is killed for examination of infected tissues
Can all human viruses be grown in animals
No because they do not all cause the disease or symptoms of the disease in animals. They cannot be used to study the effects of viral growth and disease treatments.
What is a convenient and inexpensive form of growing animal viruses
Inoculation of an embryonated egg
How is an embryoated egg inoculated
A hole is drilled in the shell of the egg and a viral suspension or suspected virus containing tissue is injected into the fluid of the egg
How do you know viral growth has occurred in an embryo
- Death of an embryo
- Embryo cell damage
- Formation of typical pocks of lesions on the egg membranes
What is the embryo method used mostly for today
Viral vaccine preparation
What are the different membranes in an egg that the virus can be injected into
- Chorioallantoic membrane
- Amniotic membrane
- Allantoic membrane
- Yolks sac
What type of viral culture has replaced embryonated eggs
Cell cultures
What do cell cultures consist of
Cells from animal tissues grown in a culture medium
What are cells from cell cultures suspended in
They are suspended in a solution that provides the osmotic pressure, nutrients, and growth factors needed for the cells to grow
How are cell culture lines prepared
A slice of animal tissue is treated with enzymes that separates the individual cells
What are the 3 basic types of cell cultures widely used in clinical and research virology
- Primary cell cultures
- Diploid fibroblast strains
- Continuous cell lines
How do normal cells in a cell culture grow
They tend to adhere to the glass or plastic container and reproduced to form a monolayer. They have a type of on/off switch for growth.
Cytopathic effect (CPE)
The visible effect viruses have on cells
How is CPE counted
In the same way as plaques in a lawn of bacteria and are reported as PFU per ML
Primary cell cultures
Come directly from animal tissue slices, and if repeatedly subcultured, one cell type will become dominant (cell strain)
What is a disadvantage of primary cell cultures
They don’t last long and tend to die off after only a few generations
Diploid fibroblast strains
Most widely used strain and support growth of a wide range of viruses that require a human host. They are developed from human embryos and can be maintained for about a 100 generations.
Continuous cell lines
This is used when viruses are routinely grown in a lab. These are transformed cancerous cells that can be maintained through an indefinite number of generations