Biochemistry (Unit 1) Flashcards
makes up everything in the universe
matter
matter is made up of small units called
atoms
atoms can combine to form more complex structures called
molecules
Elements are
PURE SUBSTANCES that cannot
be broken down into simpler substances
All ORGANIC COMPOUNDS contain
CARBON ATOMS and may also contain HYDROGEN and OXYGEN
96% of living things are made up of what 4 elements
(CHON) Carbon, Oxygen, Hydrogen, Nitrogen
2 Trace elements include (around 1%)
iodine and iron
atoms are composed of
Protons (+), Electrons (-) and Neutrons (0)
The NUMBER _______
determines the TYPE OF ELEMENT
OF PROTONS
Atoms are ____ because they have the
same number of _____ and ______
neutral, protons and electrons
Atomic Mass: The weight of
_____ + _____ (electrons are
so small we ignore their mass)
Protons + Neutrons
Are they found inside or outside the nucleus?
Protons -
Electrons -
Neutrons -
Protons - inside
Electrons - outside
Neutrons - inside
a form of an element that has the
same # of protons but different # of neutrons
isotopes
Isotopes have the same # of ____ diff ____
same # of protons but different # of neutrons
Unstable Isotope that decays giving off radiation (Transforms into an atom of another element)
Radioisotopes
Radioactive Decay
occurs at a steady and
measurable rate. Can be used to determine the
age of rocks and fossils.
Radioactive Tracers
radioisotopes can be used
to trace the path of atoms throughout the body.
ionic bonds
bond that forms between two
oppositely charged atoms/molecules
positive Cation and Negative Anion
metal+non-metal
Covalent Bonds
– when atoms SHARE valence
electrons
-nonmetal+nonmetal
the measure of an atom’s attraction to shared electrons
Electronegativity
HIGH Electronegativity =
LOW Electronegativity =
strong attraction of e-
weak attraction of e-
an unequal sharing of electrons
Polar Covalent Bond
Polar Molecules are generally water
soluble or not?
are water soluble
Non-polar Molecules are generally water soluble or not?
not water soluble
In H2O what is more negative
Oxygen (has a stronger
pull on electrons and
becomes Slightly
More Negative)
what are the three Forces of attraction between molecules
-hydrogen boning
-dipole dipole
-van der waals
Intermolecular vs Intramolecular
Inter : between
Intra : within
Hydrogen Bonds
–attractive force between slightly positive hydrogen atoms and a slightly negative atom in another molecule
Ex: Water
Dipole - Dipole
– attractive force between slightly positive atoms (not hydrogen) and a slightly negative atom in another molecule
van der Waal Forces
very weak attractions between two
molecules, or parts of molecules
when they are close together
Form from the momentary
attractions of electrons to nuclei
of other molecules
Larger molecules have larger
forces of attraction than smaller
molecules
4 common Biological Reactions
-Dehydration Synthesis
Hydrolysis
Neutralization
Redox
Hydrolysis Reaction
– involves splitting a larger
molecule apart by adding a water molecule
Adds an –OH group to one molecule and a
Hydrogen atom to the other
Dehydration Reaction (Condensation Reaction) -
Involves the joining of two molecules through the
removal of water
One molecule loses a Hydrogen atom while the other
loses an –OH group
Neutralization Reactions
– a reaction in which
an acid and a base combine to create a salt and
water
Redox Reactions
– an electron transfer reaction
Reduction –
Oxidation –
Reduction – gaining of electrons
Oxidation – loss of electrons
what is the universal solvent
water
why is water the universal solvent?
helps to dissolve many substances
your body is made up of 60% of what?
WATER
liquid that does the dissolving
solvent
thing that gets dissolved in solvent
solute
Virtually all cellular processes occur in
_____ and ALL LIVING THINGS contain _____
water
What are the 5 properties of water
-cohesion
-adhesion
-High Specific Heat Capacity
-High Specific Heat of Vaporization
-Solid Water is Less Dense
Adhesion (and examples of how it helps)
– force of
attraction between
different molecules
Water molecules may
also form hydrogen
bonds with other polar
molecules
Helps plants transport
water (sticks to xylem)
Allows water to dissolve
polar substances
Cohesion (and examples of how it helps)
– force of
attraction between like
molecules
Water molecules
form hydrogen
bonds with each
other
This results in surface
tension and allows
small insects/spiders
to walk on water
High Specific Heat Capacity (and examples of how it helps)
water
can absorb large amounts of thermal
energy when heated (also releases
large amounts of thermal energy as it
cools)
Helps organisms maintain a
constant body temperature (holds
heat)
High Specific Heat of Vaporization (and examples of how it helps)
– water absorbs large amounts of
heat as it evaporates
Many organisms cool themselves
through evaporation (sweating)
Solid Water is Less Dense than Liquid Water (explain)
As water cools the water molecules form a lattice
structure that spreads the molecules farther apart
thus lowering density
The result is that ICE FLOATS!
Prevents ice from killing aquatic organisms
Snow has a very high insulation value – keeps
critters warm in winter
Water molecules are STRONGLY polar or non-polar
POLAR
Hydrophilic –
Hydrophobic –
Hydrophilic – polar substances
that are attracted to water (ex.
Salt)
Hydrophobic – non-polar
substances that are not attracted
to water
What system measures
how ACIDIC or BASIC a
solution is.
ph scale
Acidic =
Basic =
Neutral =
Acidic = Low pH
Basic = High pH
Neutral = pH 7
Base:
-what ions are responsible?
-properties (taste, colour, electrcity etc)
OH- ions are responsible for alkalinity (basic)
(OH- > H3O+ = Basic)
Taste Bitter, Feel Slippery, Conducts
Electricity, Turns Red Litmus paper Blue
NaOH(s) + H20(l) 🡪 Na+(aq) + OH-(aq)
Acids:
-what ions are responsible?
-properties (taste, colour, electrcity etc)
H3O+ ions are responsible for acidity
(H3O+ > OH- = acidic)
Taste Sour, Conduct Electricity, Turns Blue
Litmus paper Red
HCl(g) + H20(l)🡪 H3O+(aq) + Cl-(aq)
completely dissociates in
water (ex. 100% of HCl dissociates)
Strong Acid/Base
only a small percentage of
the molecules dissociate in water (ex. 10% of Ammonia, a base, dissociates in water)
Weak Acid/Base
a chemical that can change pH by accepting or
releasing H+ ions
buffers
are strong acids or weak acids better buffers
weak
what is the base of every organic molecule
carbon atoms
cabron can form:
ring and chain structures
what forms the backbone of large complex molecules
carbon atoms
Carbon molecules that
only contain Carbon and
Hydrogen are called…
HYDROCARBONS
Hydrocarbons are
commonly used as
FUELS
Functional Group
a group of atoms that
affects the function of a molecule by
participating in chemical reactions
Attach to Carbon structures and give them
specific chemical characteristics
Often IONIC/STRONGLY POLAR and so are
involved in chemical reactions
Non-polar parts DO NOT INTERACT in
reactions
Carbon molecules can
occur in _____ and
______ Chains
BRANCHED and
UNBRANCHED Chains
-C-OH
Hydroxyl (alochols)
-c-c=O
-c-c=O-c-c
carbonyl
-c-c-NH2
Amine (amino acids)
-c-c=o + OH
carboxyl (organic acids)
c-c-PO
Phosphate (ATP) - many cellular molecules (nucleotides/nucleic acids)
c-c-S-H
Sulfhydryl
Makes molecules available for cell use by making them water soluble
Functional Groups
_____ can be metabolised by the cell
because it contains a functional group that makes it water soluble. ______, even though it contains more energy, is not usable since it is not water soluble due to the lack of a functional
group.
Ethanol - OH
Ethane
Carboxyl (COOH) – can release or accept protons?
RELEASE (acts as
an acid)
Amino (NH2) – can release or accept protons?
ACCEPT (acts as a base)
Phosphate (H3PO4) – can release or accept protons?
RELEASE (loses hydrogen atoms to
become PO42- acts as an acid)
Amino Acids contain what 2 groups
the amino groups and acidic carboxyl groups, hence the name.
Overall Structure of
Carbohydrates
Large molecules
Mainly composed of Carbon,
Hydrogen and Oxygen
Perform many complex cellular functions
Carbohydrate
organic molecule that consists of carbon, oxygen and hydrogen
One of the most abundant
biological molecules on
earth
Found in fruit, grains, and
vegetables
Come in simple and
complex forms
simplest
carbohydrate, consists of a
single sugar molecule
Most commonly occur as
3,5 and 6 carbon forms in
living organisms
Can occur as linear
(straight molecules) but
often form RING
STRUCTURES in water
Monosaccharides
a molecule that has the same composition
but different arrangement of atoms
Isomer
simple carbs (Monosaccharides) Generally have many _______ FUNCTIONAL GROUPS attached to them
POLAR (This makes sugars hydrophilic and thus highly
soluble in water)
– a carbohydrate molecule made
up of TWO monosaccharides
Disaccharide
Monosaccharides are joined together by
_________ and the resulting
bonds are called ______ Bonds
DEHYDRATION SYNTHESIS
Glycosidic
a bond between two
monosaccharides
Glycosidic Bond
– molecule that
contains more than 2 linked
monosaccharides
Polysaccharide
– the linking of smaller
subunits to create a larger molecule
polymerization
a single subunit
Monomer –
a large molecule that is
formed when monomers link together
Polymer –
Cellulose,
a polymer of glucose, is the most
abundant organic molecule on earth and
provides structural support for plants
Starch
helps store sugar in plants
Chitin
is a structural polysaccharide found in
insects and fungi