Biochemistry - Post Mid-term Flashcards
What is another name for GAG’s?
Mucopolysaccharides
What are GAG’s?
Long, unbranched chains of negatively charged sugars
* Repeating disaccharide units
What are proteoglycans?
Many GAG’s linked to a protein chain
95% sugar, 5% protein
What is a proteoglycan monomer?
Central core protein
* Many disaccharide units linked via trihexoside bond
Are GAG’s positively or negatively charged?
Negative – contributes to the bottle-brush structure (slippery mucus + synovial fluid)
Which of the GAG’s is NOT sulfated?
Hyaluronic acid
Where is hyaluronic acid synthesized?
Integral plasma membrane protein (other GAG’s in the rER)
What is a proteoglycan aggregate?
Long, central strand of hyaluronic acid & proteoglycan monomers
- NOT covalently bound
- Use link proteins
- Aggregate can function as shock absorber
Where is proteoglycan aggregate assembled?
Extra-cellular space
* Proteoglycans synthesized intracellularly
What is found at position 1 & 2 of GAG disaccharides?
1: acid sugar (glucuronic or iduronic acid)
2: amino sugar (N-acety-amino sugar)
Where are most GAG’s found?
Extracellularly
EXCEPT: Heparin – found in mast cells lining the lungs, liver & skin
Who is sulfated more: heparin or heparan sulfate?
Heparin
A deficiency of GAG’s can lead to:
OA
What is the function of heparin?
Anti-coagulant
* Can prevent clotting during surgery
What is warfarin?
Synthetic vitamin K; slower acting than heparin
Describe the synthesis of a proteoglycan monomer.
- Core protein enters rER
- Protein O-glycosylated @ serine by glycosyl transferases in Golgi
- Trihexisode linkage (xylose, galactose, galactose) formed & UDP-glucuronic acid and UDP-amino sugars used to synthesize disaccharide units
Who sulfates GAG’s?
PAPS (phospho-adenosyl-phospho-sulfate)
Why is sulfation of GAG’s important?
Make the GAG’s even more negatively charged
A defect in sulfation can lead to…
Chondrodystrophy (disorder of development and maintenance of skeletal system)
Which GAG is unsulfated?
Hyaluronic acid
What is a glycoprotein?
90% protein; 10% sugar (attached in O- or N- glycosylation)
Where is hyaluronic acid found?
Synovial fluid
Vitreous humor of eye
* Shock absorber, lubricant (not covalently attached to protein)
Which 2 GAG’s are found in cartilage?
Chondrotin sulfate
Keratin sulfate
Where is dermatin sulfate found?
Skin, vessels, heart valves
Where is heparan sulfate found?
Basement membranes (more acetylated glucosamine than heparin)
Where is keratan sulfate found?
Cartilage, bone, cornea
Where is chondriotin sulfate found?
Cartilage, bone, heart valves
Which is the most abundant GAG?
Chondrotin sulfate
Which plasma protein is not a glycoprotein?
Albumin
What are the functions of glycoproteins?
Cell surface recognition, antigen presenters, mucins
What are mucins?
Glycoproteins with 80% sugars
- Long protein core, negatively-charged NANA or sialic acid linked to amino sugars
- Attract water; resistent to proteolysis by digestive enzymes
Are the sugars in blood group proteins N- or O-linked?
O-linkage at serine or threonine residues
Describe O-glycosylation
Step-by-step linkage of activated sugarts
* First sugar linked to -OH group (serine or threonine or hydroxylysisne during procollagen synthesis)
Describe why O-glycosylation is special for collagen synthesis.
Sugar linked to -OH group of hydroxylysisne during procollagen synthesis
What is the only exception to the O-glycosylation rule?
Self-glycosylation of tyrosine residue performed by glyocgenin during glycogen synthesis
Describe N-glycosylation
Does not individually link sugars directly to the protein chain
- Uses dolichol-PP
- Sugar precursor attached to N of ASPARAGINE
N-glycosylated proteins can contain…
- Complex oligosaccharides
2. High-mannose
Can glutamine be involved in N-linked glycosylation?
NO - only asparagine
Which lipid is used as a precursor for N-glycosylation?
Dolichol-PP
How many mannose residues are found in the finished sugar precursor in N-linked glycosylation?
9
Complex N-glycosylation proteins include:
N-acetylglucosamine, NANA, L-fucose
In what form is activated mannose during N-glycosylation?
GDP-mannose
Which are the X-linked lysosome storage diseases?
Hunter disease
Fabry disease
Are lysosomal enzymes O- or N- glycosylated?
N – mannose-6-p
Which enzyme is deficient in the sphingolipidoses Tay Sachs, Fabry, Gaucher and Niemann-Pick Disease, metachromatic leukodystrophy, respectively?
Tay Sachs Disease: hexosaminidase A Fabry Disease: alpha-galactosidase Gaucher Disease: glucocerebrosidase Niemann Pick Disease: sphingomyelinase Metachromatic: aryl sulfatse
Which compounds accumulate in Tay Sachs, Gaucher, Fabry, Niemann-Pick Disease, & metachromatic leukodystrophy, respectively?
Tay Sachs Disease: GM2
Gaucher Disease : glucocerebrosides
Fabry Disease: globosides (ceramide trihexoside)
Niemann-Pick Disease Type A and B: sphingomyelin
Metachromatic: sulfatide
Describe the differences between Niemann-Pick Disease Type A and Type B.
A: infantile, deadly
B: late childhood onset - no neurodegen
What is the most common lysosomal storage disorder?
Gaucher
What is a sphingolipid?
Lipid with sphingoside alcohol
What is a ceramide?
Sphingosine + fatty acid
What are 2 types of sphingolipids?
- Glycosphingolipids (Ceramide + carb)
2. Spingophospholipids (sphingomyelin) (Ceramide + phosphorylcholine)
The enzyme required for lipolysis is
Hormone sensitive lipase
Active when phosphorylated – epinepherine
The first enzyme in the activation of fatty acids is:
Thiokinase (fatty acyl coA synthetase)
* Requires 2 ATP
The 2 enzymes and shuttle required to transport fatty acyl coA across the mito membrane…
CPT1 (inhibited by malonyl-CoA – product of TAG synthesis)
CPT2
Carnitine shuttle
Who inhibits CPT1?
Malonyl CoA (product of TAG synthesis)
The 4 steps of beta-oxidation of fatty acids
- Oxidation - FAD - MCAD
- Hydration
- Oxidation - NAD+
- Cleavage
A 16 C fatty acid will be broken into…
8 acetyl CoA’s
7 FADH
7 NADH
An MCAD deficiency results in:
Fasting hypoglycemia
Hypoketosis
Increase serum fatty acids
Increase dicarboxylic acids in urine
Jamacian vomiting sickness is a result of eating an unripe ackee fruit…
Hypoglycin A (MCAD inhibitor)
Oxidation of odd-chain FA’s requires 2 cofactors
Biotin (proprionyl coA carboxylase) & B12 (methylmalonyl coA mutase)
This syndrome results from defective peroxisomal biogenesis…
Zellweger syndrome
This sydrome results from inability to metabolize branched chain FA’s (alpha-oxidation)
Refsum disease (phytanyl coA alpha-hydroxylase)
This is a small pathway of FA oxidation (and its product can be elevated w/ a beta-oxidation deficiency)
Omega-oxidation (dicarboxylic acids)
The 3 enzymes required for ketogenesis are…
- Tholase (acetoacetyl coA)
- HMG coA synthase (HMG coA)
- HMG coA lyase (acetoacetate)
Which enzyme of ketogenesis is also used in cholesterol synthesis?
HMG coA synthase (cytosol-cholesterol; mito-ketogenesis)
For the utilization of ketone bodies, the key enzyme is:
Thiophorase (NOT present in liver)
Acetoacetate –> acetoacetyl coA
DKA results from
Inadequate insulin (more likely in DM1) * Acetone breath from excessive ketogenesis
Name the two main sites of fatty acid de novo synthesis in humans.
- Liver
2. Lactating mammary gland
Where does fatty acid synthesis take place within the cell?
Cytoplasm
What are the 2 essential (dietary) fatty acids?
- Omega-6: Linoleic acid
2. Omega-3: alpha-linolenic acid
Who is the precursor to arachidonic acid?
Omega-6, linoleic acid
When is fatty acid synthesis likely to occur?
After a high carbohydrate meal
Which metabolic condition leads to high citrate levels in liver mitochondria?
High carbohydrate diet
What is the fate of increased citrate?
Trasported to the cytosol
What enzyme & co-factors are necessary for the reaction citrate –> acetyl coA?
ATP, coA
- Enzyme: citrate lyase
- Occurs in cytosol
Which enzyme in the mitochondria is inhibited by high levels of ATP during fatty acid synthesis?
Isocitrate DH
What are the 4 methods to generate acetyl coA in the mitochondria?
- PDH
2. Degradation: FA, ketone bodies, AA’s
Describe the cellular location and the reaction catalyzed by the malic enzyme!
- Liver cytosol
Oxaloacetate –> Malate –*–> Pyruvate - Generates NADPH
- Irreversible reaction
What is the rate-limiting enzyme for fatty acid synthesis?
ACC (acetyl-coA carboxylase)
Acetyl CoA –> malonyl CoA
What 3 cofactors does acetyl coA carboxylase require?
Biotin, CO2, ATP
What 2 molecules can be used to carboxylate acetyl coA to malonyl coA?
- CO2
2. Bicarbonate (HCO3-)
In what form is acetyl coA carboxylase active/inactive? Who promotes allosteric activation/inactivation?
Active: polymer>dimer (CITRATE)
Inactive: dimer>polymer (PALMITOYL COA)
Describe the allosteric, hormonal & long-term activation of ACC.
- Polymerized-form
1. Citrate
2. Insulin (de-phosphorylates)
3. High carb, low fat diet
Describe the allosteric, hormonal & long-term inactivation of ACC.
- Dimer-form
1. Palmitoyl coA / long chain fatty acyl coA’s
2. Glucagon, NE/E (phosphorylates - cAMP)
3. High fat diet, fasting, glucagon
Which form of FAS is active?
Dimer
What is the name of the multifunctional enzyme that catalyzed 7 different reactions in fatty acid synthesis?
FAS (fatty acid synthase)
The synthesis of palmitate from malonyl coA requires…
14 NADPH
7 ATP
How many carbons are in malonyl coA?
3 C
Briefly describe the process of palmitate synthesis from malonyl coA?
2 arms: acetyl coA (sulfhydrl) condensing arm added to the ACP (acyl carrier peptide) arm which has malonyl coA (CO2 released)
What are 2 typical modifications of palmitate, once formed? Where does these modifications occur?
- Chain elongation (ER – add malonyl CoA’s or mito – reversal beta-oxidation)
- Desaturation at C’s 5, 6, 9 (ER)
What makes linoleic & alpha-linolenic acid essential?
They have double bonds beyond C # 9
Name 2 ways to form NADPH.
- PPP
2. Malic enzyme (malate –> pyruvate)
Glucose is to glycogen, as fatty acids are to:
TAG
Why is palmitoyl CoA the feedback inhibitor of ACC & not palmitate?
Palmitate has detergent character to cell membranes
Where in the human cell are long chain fatty acids elongated, in the FA synthase complex or in the ER or in mitochondria? Where in the cell are fatty acids desaturated? Which enzyme is involved?
In humans, fatty acids are elongated and desaturated in the ER using their activated form as fatty acyl CoA.
The enzyme involved in desaturation contains cytochrome b5.
Is docosahexaenoic acid (DHA 22:6, 3) synthesized in humans from linoleic acid, from -linolenic acid, or from arachidonic acid? Why is DHA so important?
DHA is synthesized in humans from linolenic acid3 family.
Linoleic acid (18:2) and arachidonic acid (20:4) are of the 6 family and cannot be used.
DHA is needed in the fetus and infants for brain and visual development and later
on in adults for general brain metabolism.
List the 4 major sites of TAG synthesis in humans.
- Liver
- Fat
- Lactating mammary gland
- Intestinal mucosa
Discuss 2 ways glycerol-3-phosphate can be formed.
- Glycerol –glycerol kinase–> glycerol-3-p
2. DHAP –NADH–> glycerol-3-phosphate
Why is TAG synthesis in the intestinal mucosa cells simplified?
TAG –panc lipase–> MAG –2 acyl coA–> DAG, TAG (no need for phosphatidyl intermediate)
* Necessary b/c intestinal mucosa cells have to resythesize a large amount of dietary TAG’s
What is unique about TAG synthesis in the liver?
Can pick up free glycerol in the blood (glycerol kinase) –> glycerol-3-phosphate
What is the intermediate in TAG synthesis in the liver & fat?
Lysophosphatidic acid
Desaturation of fatty acids requires:
- Cytochrome B5
- Desaturase
- NADPH-cytochrome B5 reductase
Which fatty acid is generally used to synthesize eicosanoids?
Arachidonic acid (precuror: Linoleic acid - omega-6)
How many carbons in an eicosanoid?
20
What cells DO NOT synthesize eicosanoids?
RBC’s
Which cell type synthesizes mainly prostacyclin and which cells synthesizes mainly thromboxane?
Prostacyclin: endothelial cells
Thromboxane: platelets
Which phospholipase can be used for direct release of arachidonic acid out of phospholipid membranes?
Phospholipase A2 (cleaves FA in position 2 of the glycerol backbone)
Which hormone inhibits the release of arachidonic acid by inhibition phospholipase A2?
Cortisol (glucocorticoid)
How can eicosanoids act?
Locally
- cAMP
- PLA2 (inc. Ca)
Describe the relationship between phospholipase C, PIP2, IP3 & DAG
PLC cleaves PIP2 to generate IP3 & DAG
Within the cell, arachidonic acid resides at _____ postion of the membrane phospholipids.
C-2
* Hence, PLA2 cleaves phosphatidylinositol
Who cleaves PIP2 to generate arachidonic acid?
PLA2
NSAID’s
COX-1 & COX-2 inhibtors
Cortisol
PLA2 + COX-2 inhibitor
Celecoxib
Celebrex (selective COX-2 inhibitor)
Which NSAID is an IRREVERSIBLE inhibitor of COX?
Aspirin
Who promotes COX-2?
Cytokines, endotoxin, tumor promotors, growth factors
Differentiate between COX-1 & COX-2.
COX-1
- Constiutive, all tissues
- Normal physio fx: gastric secretion, renal blood flow, homeostasis
COX-2
- Non-constituitive (liver, macrophages) in response to immune response
- Increased prostaglandin synthesis –> PAIN, HEAT, REDNESS, HEAT, SWELLING, FEVER
Induction of COX-2 results in:
Pain, heat, redness, swelling, fever
Aspirin reversibly/irreversiby in COX by…
- Irreversibly
2. Acetylating a serine residue in the active site
Differentiate between TXA2 & PGI2
TXA2: vasoconstriction/platlet aggregation
PGI2: vasodilation/decreased platlet aggregation
The 2 effects of 81 mg aspirin:
- Reduced TXA2 synthesis (dec clotting)
2. NO significant effect on PGI2
To overcome the irreversible inhibition by low dose aspirin…
Synthesize more COX
Why does low dose aspirin not affect prostaglandin, but affect thromboxane?
Prostagland - vascular endothelium (can synthesize more COX1)
Thromboxane - eunucleated platlets – must wait 7-10 days before NEW platlets are synthesized
Who is responsible for bronchoconstriction?
Thromboxane
How might dietary fish oil prevent inflammation?
Omega-3 –> EPA –> TXA3 & PGI3 (reduced clotting)
The immediate precursors to PGI2 & TXA2 are:
PGG2 –> PGH2
Leukotrienes are secreted during…
Allergic/hypersensitivity reactions
Who uses LTA?
- Mast cells
- Eosinophils
LTA –> LTC?
Addtion of the tripeptide glutathione
Who are the cysteine-leukotrienes?
LTC, LTD, LTE
LTC, LTD, LTE …
Increase vascular permeability, and lead to severe bronchoconstriction, vasoconstriction & lung edema
The enzyme responsible for leukotriene synthesis:
lipoxygenase
3 possible treatments for asthma:
- Steroids / inhibit release arachidonic acid
- Lipoxygenase inhibitor
- Cysteinyl-leukotriene receptor antagonists
Would you expect COX-2 in platlets?
COX-2 synthesis is induced. Protein synthesis is not possible in platelets and therefore one would not expect COX-2 in platelets.
What is the effect of low dose apirpin on COX?
COX-1 on platelets – unable to synthesize thromboxane
What is the function of prostaglandins?
- Gastric protection (+ mucus, - acid)
2. Renal BP regulation
Compare the 2 to the 3 series of PG & TX.
PGI2 = PGI3
TXA2 > TXA3
* Hence, a diet rich in omega-3’s will favor prevetion of blood clotting due to weaker TXA3
Why will a diet a diet rich in omega-3’s favor prevention of blood clotting?
Weaker TXA3
Name the intermediate that is formed in the linear pathway from arachidonic acid in the synthesis of leukotriene A4.
5-lipoxygenase forms 5-HPETE
LBTB4 …
acts mainly as chemo-attractant for neutrophils in blood
LTC4 lead to…
Severe bronchioconstriction
Name the components of the slow reacting substance of anaphylaxis (SRS-A). Is SRS-A stronger or weaker than histamine?
SRS-A contains LTC, LTD and LTE. It is much more potent than histamine.
Which molecule is linked to LTA4 in order to form LTC4?
Tripeptide glutathione