Biochemistry - Post Mid-term Flashcards
What is another name for GAG’s?
Mucopolysaccharides
What are GAG’s?
Long, unbranched chains of negatively charged sugars
* Repeating disaccharide units
What are proteoglycans?
Many GAG’s linked to a protein chain
95% sugar, 5% protein
What is a proteoglycan monomer?
Central core protein
* Many disaccharide units linked via trihexoside bond
Are GAG’s positively or negatively charged?
Negative – contributes to the bottle-brush structure (slippery mucus + synovial fluid)
Which of the GAG’s is NOT sulfated?
Hyaluronic acid
Where is hyaluronic acid synthesized?
Integral plasma membrane protein (other GAG’s in the rER)
What is a proteoglycan aggregate?
Long, central strand of hyaluronic acid & proteoglycan monomers
- NOT covalently bound
- Use link proteins
- Aggregate can function as shock absorber
Where is proteoglycan aggregate assembled?
Extra-cellular space
* Proteoglycans synthesized intracellularly
What is found at position 1 & 2 of GAG disaccharides?
1: acid sugar (glucuronic or iduronic acid)
2: amino sugar (N-acety-amino sugar)
Where are most GAG’s found?
Extracellularly
EXCEPT: Heparin – found in mast cells lining the lungs, liver & skin
Who is sulfated more: heparin or heparan sulfate?
Heparin
A deficiency of GAG’s can lead to:
OA
What is the function of heparin?
Anti-coagulant
* Can prevent clotting during surgery
What is warfarin?
Synthetic vitamin K; slower acting than heparin
Describe the synthesis of a proteoglycan monomer.
- Core protein enters rER
- Protein O-glycosylated @ serine by glycosyl transferases in Golgi
- Trihexisode linkage (xylose, galactose, galactose) formed & UDP-glucuronic acid and UDP-amino sugars used to synthesize disaccharide units
Who sulfates GAG’s?
PAPS (phospho-adenosyl-phospho-sulfate)
Why is sulfation of GAG’s important?
Make the GAG’s even more negatively charged
A defect in sulfation can lead to…
Chondrodystrophy (disorder of development and maintenance of skeletal system)
Which GAG is unsulfated?
Hyaluronic acid
What is a glycoprotein?
90% protein; 10% sugar (attached in O- or N- glycosylation)
Where is hyaluronic acid found?
Synovial fluid
Vitreous humor of eye
* Shock absorber, lubricant (not covalently attached to protein)
Which 2 GAG’s are found in cartilage?
Chondrotin sulfate
Keratin sulfate
Where is dermatin sulfate found?
Skin, vessels, heart valves
Where is heparan sulfate found?
Basement membranes (more acetylated glucosamine than heparin)
Where is keratan sulfate found?
Cartilage, bone, cornea
Where is chondriotin sulfate found?
Cartilage, bone, heart valves
Which is the most abundant GAG?
Chondrotin sulfate
Which plasma protein is not a glycoprotein?
Albumin
What are the functions of glycoproteins?
Cell surface recognition, antigen presenters, mucins
What are mucins?
Glycoproteins with 80% sugars
- Long protein core, negatively-charged NANA or sialic acid linked to amino sugars
- Attract water; resistent to proteolysis by digestive enzymes
Are the sugars in blood group proteins N- or O-linked?
O-linkage at serine or threonine residues
Describe O-glycosylation
Step-by-step linkage of activated sugarts
* First sugar linked to -OH group (serine or threonine or hydroxylysisne during procollagen synthesis)
Describe why O-glycosylation is special for collagen synthesis.
Sugar linked to -OH group of hydroxylysisne during procollagen synthesis
What is the only exception to the O-glycosylation rule?
Self-glycosylation of tyrosine residue performed by glyocgenin during glycogen synthesis
Describe N-glycosylation
Does not individually link sugars directly to the protein chain
- Uses dolichol-PP
- Sugar precursor attached to N of ASPARAGINE
N-glycosylated proteins can contain…
- Complex oligosaccharides
2. High-mannose
Can glutamine be involved in N-linked glycosylation?
NO - only asparagine
Which lipid is used as a precursor for N-glycosylation?
Dolichol-PP
How many mannose residues are found in the finished sugar precursor in N-linked glycosylation?
9
Complex N-glycosylation proteins include:
N-acetylglucosamine, NANA, L-fucose
In what form is activated mannose during N-glycosylation?
GDP-mannose
Which are the X-linked lysosome storage diseases?
Hunter disease
Fabry disease
Are lysosomal enzymes O- or N- glycosylated?
N – mannose-6-p
Which enzyme is deficient in the sphingolipidoses Tay Sachs, Fabry, Gaucher and Niemann-Pick Disease, metachromatic leukodystrophy, respectively?
Tay Sachs Disease: hexosaminidase A Fabry Disease: alpha-galactosidase Gaucher Disease: glucocerebrosidase Niemann Pick Disease: sphingomyelinase Metachromatic: aryl sulfatse
Which compounds accumulate in Tay Sachs, Gaucher, Fabry, Niemann-Pick Disease, & metachromatic leukodystrophy, respectively?
Tay Sachs Disease: GM2
Gaucher Disease : glucocerebrosides
Fabry Disease: globosides (ceramide trihexoside)
Niemann-Pick Disease Type A and B: sphingomyelin
Metachromatic: sulfatide
Describe the differences between Niemann-Pick Disease Type A and Type B.
A: infantile, deadly
B: late childhood onset - no neurodegen
What is the most common lysosomal storage disorder?
Gaucher
What is a sphingolipid?
Lipid with sphingoside alcohol
What is a ceramide?
Sphingosine + fatty acid
What are 2 types of sphingolipids?
- Glycosphingolipids (Ceramide + carb)
2. Spingophospholipids (sphingomyelin) (Ceramide + phosphorylcholine)
The enzyme required for lipolysis is
Hormone sensitive lipase
Active when phosphorylated – epinepherine
The first enzyme in the activation of fatty acids is:
Thiokinase (fatty acyl coA synthetase)
* Requires 2 ATP
The 2 enzymes and shuttle required to transport fatty acyl coA across the mito membrane…
CPT1 (inhibited by malonyl-CoA – product of TAG synthesis)
CPT2
Carnitine shuttle
Who inhibits CPT1?
Malonyl CoA (product of TAG synthesis)
The 4 steps of beta-oxidation of fatty acids
- Oxidation - FAD - MCAD
- Hydration
- Oxidation - NAD+
- Cleavage
A 16 C fatty acid will be broken into…
8 acetyl CoA’s
7 FADH
7 NADH
An MCAD deficiency results in:
Fasting hypoglycemia
Hypoketosis
Increase serum fatty acids
Increase dicarboxylic acids in urine
Jamacian vomiting sickness is a result of eating an unripe ackee fruit…
Hypoglycin A (MCAD inhibitor)
Oxidation of odd-chain FA’s requires 2 cofactors
Biotin (proprionyl coA carboxylase) & B12 (methylmalonyl coA mutase)
This syndrome results from defective peroxisomal biogenesis…
Zellweger syndrome
This sydrome results from inability to metabolize branched chain FA’s (alpha-oxidation)
Refsum disease (phytanyl coA alpha-hydroxylase)
This is a small pathway of FA oxidation (and its product can be elevated w/ a beta-oxidation deficiency)
Omega-oxidation (dicarboxylic acids)
The 3 enzymes required for ketogenesis are…
- Tholase (acetoacetyl coA)
- HMG coA synthase (HMG coA)
- HMG coA lyase (acetoacetate)
Which enzyme of ketogenesis is also used in cholesterol synthesis?
HMG coA synthase (cytosol-cholesterol; mito-ketogenesis)
For the utilization of ketone bodies, the key enzyme is:
Thiophorase (NOT present in liver)
Acetoacetate –> acetoacetyl coA
DKA results from
Inadequate insulin (more likely in DM1) * Acetone breath from excessive ketogenesis
Name the two main sites of fatty acid de novo synthesis in humans.
- Liver
2. Lactating mammary gland
Where does fatty acid synthesis take place within the cell?
Cytoplasm
What are the 2 essential (dietary) fatty acids?
- Omega-6: Linoleic acid
2. Omega-3: alpha-linolenic acid
Who is the precursor to arachidonic acid?
Omega-6, linoleic acid
When is fatty acid synthesis likely to occur?
After a high carbohydrate meal
Which metabolic condition leads to high citrate levels in liver mitochondria?
High carbohydrate diet
What is the fate of increased citrate?
Trasported to the cytosol
What enzyme & co-factors are necessary for the reaction citrate –> acetyl coA?
ATP, coA
- Enzyme: citrate lyase
- Occurs in cytosol
Which enzyme in the mitochondria is inhibited by high levels of ATP during fatty acid synthesis?
Isocitrate DH
What are the 4 methods to generate acetyl coA in the mitochondria?
- PDH
2. Degradation: FA, ketone bodies, AA’s
Describe the cellular location and the reaction catalyzed by the malic enzyme!
- Liver cytosol
Oxaloacetate –> Malate –*–> Pyruvate - Generates NADPH
- Irreversible reaction
What is the rate-limiting enzyme for fatty acid synthesis?
ACC (acetyl-coA carboxylase)
Acetyl CoA –> malonyl CoA
What 3 cofactors does acetyl coA carboxylase require?
Biotin, CO2, ATP
What 2 molecules can be used to carboxylate acetyl coA to malonyl coA?
- CO2
2. Bicarbonate (HCO3-)
In what form is acetyl coA carboxylase active/inactive? Who promotes allosteric activation/inactivation?
Active: polymer>dimer (CITRATE)
Inactive: dimer>polymer (PALMITOYL COA)
Describe the allosteric, hormonal & long-term activation of ACC.
- Polymerized-form
1. Citrate
2. Insulin (de-phosphorylates)
3. High carb, low fat diet
Describe the allosteric, hormonal & long-term inactivation of ACC.
- Dimer-form
1. Palmitoyl coA / long chain fatty acyl coA’s
2. Glucagon, NE/E (phosphorylates - cAMP)
3. High fat diet, fasting, glucagon
Which form of FAS is active?
Dimer
What is the name of the multifunctional enzyme that catalyzed 7 different reactions in fatty acid synthesis?
FAS (fatty acid synthase)
The synthesis of palmitate from malonyl coA requires…
14 NADPH
7 ATP
How many carbons are in malonyl coA?
3 C
Briefly describe the process of palmitate synthesis from malonyl coA?
2 arms: acetyl coA (sulfhydrl) condensing arm added to the ACP (acyl carrier peptide) arm which has malonyl coA (CO2 released)
What are 2 typical modifications of palmitate, once formed? Where does these modifications occur?
- Chain elongation (ER – add malonyl CoA’s or mito – reversal beta-oxidation)
- Desaturation at C’s 5, 6, 9 (ER)
What makes linoleic & alpha-linolenic acid essential?
They have double bonds beyond C # 9
Name 2 ways to form NADPH.
- PPP
2. Malic enzyme (malate –> pyruvate)
Glucose is to glycogen, as fatty acids are to:
TAG
Why is palmitoyl CoA the feedback inhibitor of ACC & not palmitate?
Palmitate has detergent character to cell membranes
Where in the human cell are long chain fatty acids elongated, in the FA synthase complex or in the ER or in mitochondria? Where in the cell are fatty acids desaturated? Which enzyme is involved?
In humans, fatty acids are elongated and desaturated in the ER using their activated form as fatty acyl CoA.
The enzyme involved in desaturation contains cytochrome b5.
Is docosahexaenoic acid (DHA 22:6, 3) synthesized in humans from linoleic acid, from -linolenic acid, or from arachidonic acid? Why is DHA so important?
DHA is synthesized in humans from linolenic acid3 family.
Linoleic acid (18:2) and arachidonic acid (20:4) are of the 6 family and cannot be used.
DHA is needed in the fetus and infants for brain and visual development and later
on in adults for general brain metabolism.
List the 4 major sites of TAG synthesis in humans.
- Liver
- Fat
- Lactating mammary gland
- Intestinal mucosa
Discuss 2 ways glycerol-3-phosphate can be formed.
- Glycerol –glycerol kinase–> glycerol-3-p
2. DHAP –NADH–> glycerol-3-phosphate
Why is TAG synthesis in the intestinal mucosa cells simplified?
TAG –panc lipase–> MAG –2 acyl coA–> DAG, TAG (no need for phosphatidyl intermediate)
* Necessary b/c intestinal mucosa cells have to resythesize a large amount of dietary TAG’s
What is unique about TAG synthesis in the liver?
Can pick up free glycerol in the blood (glycerol kinase) –> glycerol-3-phosphate
What is the intermediate in TAG synthesis in the liver & fat?
Lysophosphatidic acid
Desaturation of fatty acids requires:
- Cytochrome B5
- Desaturase
- NADPH-cytochrome B5 reductase
Which fatty acid is generally used to synthesize eicosanoids?
Arachidonic acid (precuror: Linoleic acid - omega-6)
How many carbons in an eicosanoid?
20
What cells DO NOT synthesize eicosanoids?
RBC’s
Which cell type synthesizes mainly prostacyclin and which cells synthesizes mainly thromboxane?
Prostacyclin: endothelial cells
Thromboxane: platelets
Which phospholipase can be used for direct release of arachidonic acid out of phospholipid membranes?
Phospholipase A2 (cleaves FA in position 2 of the glycerol backbone)
Which hormone inhibits the release of arachidonic acid by inhibition phospholipase A2?
Cortisol (glucocorticoid)
How can eicosanoids act?
Locally
- cAMP
- PLA2 (inc. Ca)
Describe the relationship between phospholipase C, PIP2, IP3 & DAG
PLC cleaves PIP2 to generate IP3 & DAG
Within the cell, arachidonic acid resides at _____ postion of the membrane phospholipids.
C-2
* Hence, PLA2 cleaves phosphatidylinositol
Who cleaves PIP2 to generate arachidonic acid?
PLA2
NSAID’s
COX-1 & COX-2 inhibtors
Cortisol
PLA2 + COX-2 inhibitor
Celecoxib
Celebrex (selective COX-2 inhibitor)
Which NSAID is an IRREVERSIBLE inhibitor of COX?
Aspirin
Who promotes COX-2?
Cytokines, endotoxin, tumor promotors, growth factors
Differentiate between COX-1 & COX-2.
COX-1
- Constiutive, all tissues
- Normal physio fx: gastric secretion, renal blood flow, homeostasis
COX-2
- Non-constituitive (liver, macrophages) in response to immune response
- Increased prostaglandin synthesis –> PAIN, HEAT, REDNESS, HEAT, SWELLING, FEVER
Induction of COX-2 results in:
Pain, heat, redness, swelling, fever
Aspirin reversibly/irreversiby in COX by…
- Irreversibly
2. Acetylating a serine residue in the active site
Differentiate between TXA2 & PGI2
TXA2: vasoconstriction/platlet aggregation
PGI2: vasodilation/decreased platlet aggregation
The 2 effects of 81 mg aspirin:
- Reduced TXA2 synthesis (dec clotting)
2. NO significant effect on PGI2
To overcome the irreversible inhibition by low dose aspirin…
Synthesize more COX
Why does low dose aspirin not affect prostaglandin, but affect thromboxane?
Prostagland - vascular endothelium (can synthesize more COX1)
Thromboxane - eunucleated platlets – must wait 7-10 days before NEW platlets are synthesized
Who is responsible for bronchoconstriction?
Thromboxane
How might dietary fish oil prevent inflammation?
Omega-3 –> EPA –> TXA3 & PGI3 (reduced clotting)
The immediate precursors to PGI2 & TXA2 are:
PGG2 –> PGH2
Leukotrienes are secreted during…
Allergic/hypersensitivity reactions
Who uses LTA?
- Mast cells
- Eosinophils
LTA –> LTC?
Addtion of the tripeptide glutathione
Who are the cysteine-leukotrienes?
LTC, LTD, LTE
LTC, LTD, LTE …
Increase vascular permeability, and lead to severe bronchoconstriction, vasoconstriction & lung edema
The enzyme responsible for leukotriene synthesis:
lipoxygenase
3 possible treatments for asthma:
- Steroids / inhibit release arachidonic acid
- Lipoxygenase inhibitor
- Cysteinyl-leukotriene receptor antagonists
Would you expect COX-2 in platlets?
COX-2 synthesis is induced. Protein synthesis is not possible in platelets and therefore one would not expect COX-2 in platelets.
What is the effect of low dose apirpin on COX?
COX-1 on platelets – unable to synthesize thromboxane
What is the function of prostaglandins?
- Gastric protection (+ mucus, - acid)
2. Renal BP regulation
Compare the 2 to the 3 series of PG & TX.
PGI2 = PGI3
TXA2 > TXA3
* Hence, a diet rich in omega-3’s will favor prevetion of blood clotting due to weaker TXA3
Why will a diet a diet rich in omega-3’s favor prevention of blood clotting?
Weaker TXA3
Name the intermediate that is formed in the linear pathway from arachidonic acid in the synthesis of leukotriene A4.
5-lipoxygenase forms 5-HPETE
LBTB4 …
acts mainly as chemo-attractant for neutrophils in blood
LTC4 lead to…
Severe bronchioconstriction
Name the components of the slow reacting substance of anaphylaxis (SRS-A). Is SRS-A stronger or weaker than histamine?
SRS-A contains LTC, LTD and LTE. It is much more potent than histamine.
Which molecule is linked to LTA4 in order to form LTC4?
Tripeptide glutathione
Why are LTC, LTD and LTE named cysteinyl-leukotrienes?
All contain covalently bound a cysteinyl-group that originated in glutathione.
Describe the anti-inflammatory action of glucocorticoids related to inhibition of release of arachidonic acid.
Corticosteroids inhibit the release of arachidonic acid by inhibition PLA2 & also COX-2
Compare the actions of PGE to PGF2
Vasoconstriction is performed by PGF 2
Vasodilation is performed by PGE2
Name four major functions or usages of cholesterol!
a. Cholesterol modulates the correct fluidity of the plasma membranes
b. Cholesterol is used only in the liver for synthesis of primary bile acids
c. Cholesterol is used for steroid hormone de novo synthesis only in the adrenal cortex, ovaries and testes.(not in the liver)
d. An intermediate of cholesterol synthesis is used in the skin for the formation of vitamin D (process needs UV light)
In which cells does cholesterol synthesis mainly take place? In which cell compartment? Why are mitochondria needed?
Cholesterol synthesis takes place mainly in the hepatocyte and in cells of the adrenal cortex and in the brain.
- Takes place in cytosol; mito needed for citrate (citrate lyase)
What are the 3 major sources of liver cholesterol?
- Diet
- Lipoproteins (HDL, LDL)
- De novo synthesis
The liver sends cholesterol 3 places. What are they?
- Secrete in HDL/VLDL
- Free cholesterol in bile
- Bile salts/acids
What percentage of dietary fat is cholesterol?
10% (Majority is TAG’s)
The key regulated enzyme in cholesterol synthesis…
HMG CoA reductase
HMG CoA reductase is regulated by…
Negative: glucagon, AMP kinase, high cholesterol diet, cholesterol, statins
Positive: insulin
HMG CoA reductase is activated when phosphorylated/dephosphorylated
Dephosphorylated
Cholesterol has how many C’s?
27
The side products of cholesterol synthesis are…
- Dolichol & Ubiquinone (IPP & FPP)
3. Protein prenylation (GPP & FPP)
Why are so many pyrophosphates needed in cholesterol synthesis?
Necessary to make the intermediates soluble in the cytosol
What is the location of the key enzyme of cholesterol synthesis?
ER membrane-bound
What is the paradox associated with statin use?
Statins reduce the amount of cholesterol produced by competitively inhibiting HMG CoA reductase
* The decreased cholesterol paradoxically causes upregulation of the enzyme (by release of SREBP, which binds to SRE region of HMG coA reductase gene & increases transcription)
HMG CoA reductase is regulated by intracellular/extracellular cholesterol.
Intracellular cholesterol
What is the acronym for the protein released when intra-cellular cholesterol is low?
Sterol regulatory element binding protein (SREBP)
Who activates SREBP?
SCAP
Statins have 4 major effects
- Increased LDL receptor on cell surface
- Increased uptake of LDL from serum
- Decreased serum cholesterol
- Increased HMG CoA reductase transcription – SREBP (paradox)
In the liver, a high concentration of cholesterol…
Leads to degradation of HMG CoA reductase by the ubiquination system in proteasomes
Low intracellular cholesterol leads to…
- Upregulation of LDL receptors
2. Synthesis of cholesterol
Which enzyme promotes the storage of cholesterol esters?
ACAT
SLOS (Smith Lemli Opitz Syndrome)
- Auto recessive cholesterol synthesis problem
- Deficiency of 7-dehydrocholesterol reductase
- X double-bond formation, ring B, partially deficient
The difference between Hunter syndrome & Hurler syndrome
Mucopolysaccaridoses
- Hurler: iconidase
- Hunter: iconidate
- Both lead to build-up of dermatin & keratin sulfate
- Hunter –> no occular problems
True/False. Cholesterol can be metabolized by humans
False – ring structure cannot be metabolized
Elimination of cholesterol
Cholesterol –> Bile acids –> Feces
Cholesterol is modified by intestinal bacteria to form…
- Cholestanol
2. Coprostanol
The rate limiting enzyme of bile acid synthesis is: (mention products & regulation)
7-alpha-hydroxylase
- Products: cholic acid & chenodeoxycholic acid
- +: cholesterol
- -: cholic acid
What is the difference between bile acids & bile salts?
Bile salts are bile acids conjugated with glycine or taurine.
* Bile salts are much more effective at solubilizing lipids than bile acids
What are the 2 major bile salts?
- Glycocholic acid/glycochenodeoxycholic acid
2. Taurocholic acid/Taurochenodeoxycholic acid
The major organic components of bile…
- Phosphatidylcholine (lecithin)
2. Bile salts
What is the fate of bile salts & acids?
97% are recycled by portal circulation
The action of intestinal flora on bile salts…
- Remove taurine/glycine
2. Convert primary bile salts into secondary bile salts by removing hydroxyl (deoxycholic acid & lithocholic acid)
Cholelithiasis is caused by…
- Deficiency of lecithin (phosphatidylcholine) &/or bile salts
* Causes cholesterol in bile to precipitate in the gall bladder
The difference between cholesterol gallstones vs. black pigment gallstones
Chol: cholesterol
Black pigment: bilirubinate (less common)
4 treatments for cholelithiasis
- Surgery
- Chenodeoxycholic acid (chenodiol)
- Shock wave disintegration
- Contact exposure methyl-tert-butyl ether
If a gallstone obstructs the ampulla of Vater…
Acute pancreatitis
What are the 4 functions of bile acids?
- Excretion of cholesterol in feces
- Solublize cholesterol (prevent precipitation in bile)
- Emulsify dietary TAG’s for pancreatic lipase
- Intestinal absorption of fat-soluble vitamins (ADEK)
Who are the 4 fat-soluble vitamins?
A, D, E, K
What is the difference between primary and secondary bile salts?
Secondary bile salts are de-conjugated (glycine & taurine) & de-hydroxylated
* deoxycholic acid + lithocholic acid
Many ____ coenzymes are used in cholesterol synthesis.
NADPH
What is the broad concept of cholesterol synthesis?
The concept is to form a five-carbon building block that is used six times to form
a 30 carbon molecule.
What is the 5-carbon building block of cholesterol synthesis & how is it formed?
isopentenyl-PP (IPP). It is formed by
decarboxylation of mevalonyl-PP.
Lipoproteins contain a phospholipid monolayer/bilayer?
Monolayer (mostly PC)
What is needed for the appropriate function of lipoproteins?
Apo-lipoproteins
Chylomicron release from intestinal mucosal cells requires…
Apo B-48
VLDL release by the liver requires…
Apo B-100
In order to be taken up by the liver, IDL’s & chylomicron remnants require…
Apo E
VLDLS are cleaved to… What is the fate of these molecules?
IDL’s by LPL
* 50% to the liver; 50% cleaved by HTLG to LDL
What is the difference between hepatic lipase and lipoprotein lipase?
LPL – capillaries of heart, adipocytes
Hepatic lipase – capillaries of liver
What is the fate of LDL’s?
70% to the liver
30% extra-hepatic – steroid synthesis, cell membranes
An unfortunate consequence of high serum LDL…
oxLDL –> invade macrophages via SR-A1 –> foam cells
3 risk factors for coronary heart disease (with respect to LDL)
- Foam cells
- LDL-pattern B (smaller / can be trapped in ECM)
- LP (A)
What is Lp (a)?
Covalently bound (disulfid bond) to apo-B-100
- Structural analog to plasminogen & can compete with plasminogen for binding to fibrin
- Reduce removal of blood clots & could trigger MI/Stroke
How do the various lipoproteins separate using gel electrophoresis after a fast?
- Chylomicrons stay at origin (s travel furthest
Abnormal lipoprotein metabolism can be divided into…
- Hyperlipidemia
- -HyperTAG – 1, 4, 5
- -HyperChol – 2, 3 - Hypolipidemia
- -Hypoalphalipoproteinemia
- -Abetalipoproteinemia
Hypertriacylglycerolemias lead to … (serum)
TAG blood values
What is the difference between Hyperlipidemia I, IV, V
I: chylomicrons (a-LPL; b-APO C-2; c-LPL inhibitor)
IV: VLDL (common) (LPL deficiency)
V: VLDL & chylomicrons
What is the difference between hyperlipidemia 2 & 3?
2A- Familial hypercholesterolemia - defective LDL receptor - elevated LDL
2B- elevated LDL & VLDL
3 - dysbetalipoproteinemia - high remnants (IDL & chylo remnants)
Homo - APO E-2 – less effective (E rhymes with 3)
Statins can be used to treat …
Hyperlipidemia 2A
Differentiate between statins & bile acid sequesterants…
Statins – competitive inhibitors of HMG CoA reductase (inc LDL receptor syn & paradoxically increase HMG CoA reductase transcription)
Bile acid sequesterants – excrete bile acids/salts in feces; liver makes more, thus lowering cholesterol
What does the liver use cholesterol for?
Synthesis of bile salts/acids
4 major components of bile
- Conjugated bile salts
- PC
- Free cholesterol
- Conjugated bilirubin
T/F There is a storage form of nitrogen in humans
False
What are the 3 ways to contribute to the amino acid pool in the body?
- Protein synthesis / turnover
- Dietary
- AA synthesis (non-essential)
What area the 2 major ways AA’s are used in the body?
- Catabolism (urea, C-skeleton)
2. Synthesis of N-containing compounds
What are several N-containing compounds?
Heme, creatine, neurotransmitters, purines, pyramidines
What are the dietary essential amino acids?
P-phenylalanine V-valine T-threonine T-tryptophan I-isoleucine M-methionine H-histadine A-argininine L-leucine L-lysine
Which are the 3 conditional non-essential amino acids?
- Cysteine (methionine)
- Tyrosine (phenylalanine)
- Arginine
What are the 2 major methods of protein degradation?
- Lysosome (extra-cellular/cell-surface proteins)
2. Proteasome/ubiquitination – proteins syn. by cell
What are the 4 ways proteins are turned over in the body?
- Oxidative damage
- Denaturation - hydrophobic core exposed
- Ubiquination - ATP dept.
- PEST (proline, glutamate, serine, threonine) sequences – short 1/2 life
T/F Ubiquination is an ATP dependent process
True
What is the fate of ubiquitin post-proteasome?
Recycled
What can result from an inappropriate release of lysosome components from WBC’s into the joints?
Inflammatory disease
What is the pH environment of the lysosome?
Acidic
Where do most AA’s release their amino groups as ammonia?
Liver
What is the fate of NH3?
Detoxified to urea
What are amino acid carbon skeletons used for?
- GNG
2. Burned in TCA cycle
Urea made in the liver is transported to the __________ for excretion.
Kidney
How can the kidneys excrete ammonia as ammonium ions?
Glutamine (glutaminase ion)
What are 2 examples of non-protein nitrogenous substances excreted by the kidney?
- Uric acid (purine degrad)
2. Creatinine (creatine degrad)
What is the major nitrogenous product excreted in the urine?
Urea (86%)
Describe the reaction: glutamine –> glutamate + NH4+
Glutaminase (kidney)
How are amino acids absorbed at the intestinal brush border?
Secondary active transport
Na/K gradient; portal vein w/ own gradient
What is one major cause of renal stones in children?
Cystinuria (COAL) C- cystine O- ornithine A- arginine L- lysine * Cystine excreted and urine, can precipitate & cause stones
What disease results from a defect in transport of neutral amino acids, i.e. tryptophan?
Hartnup’s disease
* Can result in NAD+ deficiency (pellagra)
From what amino acid do you synthesize NAD+?
Tryptophan
What disease results from the lack of NAD+?
Pellagra
Tissue protein catabolism results in …
Amino acids (amino group off, or to anthoer alpha-keto acid)
2. Alpha keto acid
3 & 4 – pyruvate/glucose (glucogenic); acetyl coA (ketogenic)
Differentiate between:
Essential vs. Non-essential AA
Glucogenic vs. Ketogenic AA
Essential: cannot be synthesized by human
Glucogenic: substrates for GNG (pyruvate) or TCA intermediate
Ketogenic: acetoacetate, acetyl CoA, acetoacetyl CoA
What are the 2 major ketogenic AA’s?
Leucine, Lysine (acetoacetyl-CoA)
What 2 AA’s can be used to make alpha-ketoglutarate?
Glutamate, glutamine
What types of amino acids can be used to make succinyl coA?
BCAA’s (isoleucine, valine)
What 2 AA’s can be used to make fumerate?
Phenylalanine, tyrosine
What two amino acids can be used to make oxaloacetate?
Asparagine, aspartate
What AA can be used to make pyruvate?
Alanine
What enzyme catalyzes the reaction involving alanine?
Alanine -ALT + B6-> Pyruvate
* Amino group transferred to alpha-ketogluterate to form glutamate
The glucose-alanine cycle involves what two organs?
Muscle (form pyruvate) & liver (GNG)
The major transport AA during starvation…
Alanine
Is the reaction between alanine & ALT reversible?
Yes
What enzyme is often used for the treatment of leukemia?
Asparaginase (reduced availability of asparagine inhibits tumor growth)
3 enzymes are capable of incorporating free ammonia.
- Glutamate DH
- Glutamine synthetase
- CPS I
Where is glutaminase active?
Renal tubule/liver
Where is glutamine synthetase active?
BRAIN & endothelial cells of the hepatic vein
Which enzyme is particularly helpful in picking up free ammonia in the brain?
Glutamine synthetase
The reversible reaction in glutamate metabolism…
Glutamate DH (liver-oxidation) Reverse reaction (uses free ammonia) to make glutamate
The enzyme Glutamate DH requires…
NAD+
The enzyme AST requires…
PLP (B6)
The metabolism of aspartate…
Aspartate –> Asparagine (asparagine synthetase – uses free glutamine, not ammonia)
The 3 major disorders of Phe/Tyrosine metabolism:
- PKU 1 (PAH), Maternal, 2 (malignant - BH2 reductase) – mousey urine
- Alkaptonuria – homogentisic acid oxidase – dark urine
- Tyrosinemia – cabbage urine – fumerylacetoacetate hydrolase
The 2 major disorders of branched chain AA deficiency…
- MSUD - branched chain alpha-ketoacid DH (+ B1) – ketosis + maple syrup urine
- Methylmalonic aciduria (methylmalonyl CoA mutase + B12) – seizures, encepholapthy
What is homocystinuria?
Cystathione beta-synthase deficiency
* Disruption of C/T (collagen!) – osteoporosis, lipid deposits
What are the 2 fates of homocystein?
- Recycled to methionine
2. Sulfur delivered to serine to form cysteine
Transamination reactions require…
PLP (Vitamin B6)
How is NH3 transported from peripheral tissues?
- Glutamine
2. Alanine
Transamination reactions, in general, use this as an amino acceptor…
Alpha-ketogluterate
What is the fate of urea from the liver?
75% - kidney
25% - gut / ureases & proteases
The urea cycle has 2 N donors
- Glutamate (ammonia)
2. Aspartate
Where does the urea cycle take place?
Liver (1 & 2 - mitochondria; 3-5 - cytosol)
The major regulated enzyme of the urea cycle.
CPSI (requires NAG n-acetyl glutamate)
N-acetylglutamate (NAG) formation can be stimulated by…
Arginine
For which congenital hyperammonemia disorder is it not kosher to give arginine?
Arginemia
The 5 enzymes required for the urea cycle:
- CPSI (NAG)
- OTC
- ASS
- ASL
- ARG
Treatment for hyperammonemia (congenital)
- Dialysis
- Benzoic acid (benzyl CoA -glycine-> hippurate)
- Phenylbutyrate –> phenylacetate –> phenylacetylglutamine
- Low protein diet
Acquired hyperammonemia
- Porto-systemic shut of ammonia
- Neurotoxicity
3 treatments for acquired hyperammonemia
- Low protein diet
- Lactaluslose (produces lactic acid – can be neutralized by NH4+)
- Neomycin (antibiotic that can reduce bacterial urease in the gut)
What is an antibiotic that can reduce gut urease activity?
Neomycin
What are the 2 prevailing hypotheses related to neurotoxicity secondary to hyperammonemia?
- Energy (taking up TCA intermediates alpha-KG –> glutamate)
- Neurotransmitter (decreased GABA & glutamate)
Parkinson’s Disease
- Loss of dopamine producing cells in basal ganglia
- Admin: L-dopa (with a dopa decarboxylase inhibitor)
- Neurodegenerative movement disorders
Serotonin is synthesized in…
Gut, platelets, CNS
Pheochromocytoma
Elevated VMA & catecholamines (urinary)
- Episodic – headache, thirst, tachy
- Adrenal medulla tumor
Synthesis of serotonin
Tryptophan -BH4-> 5 hydroxytryptophan -AA decarboxylase-> serotonin
The phenylalanine cascade…
Phe -PAH-> Tyr -TH-> L-DOPA -decarboxylase-> DOPAMINE -hydroxylase-> NE -SAM/methylate-> Epi
The degradation of catecholamines
- MAO & COMT (catechol o-methyl transferase)
- Dopamine –> HVA (homovanillyic acid)
- NE/E –> VMA (vanillyl acid)
Dopamine beta-hydroxylase requires…
Vitamin C
DOPA decarboxylase requires…
Vitamin B6 (PLP)
Carcinoid
- Tumor of serotonin producing cells in GIT
- Cutaneous flushing, diarrhea
- Increased 5-HIAA excretion in urine
From what is melatonin derived?
Serotonin
The 3 reactions requiring BH4 coenzyme
- Phe -> Tyrosine
- Tyr –> L-DOPA
- Tryptophan –> 5-hydroxytryptophan
A deficiency of BH4…
Can result in delayed mental development + seizures
- Treat with Neurotransmitter precursors in diet + dietary Phe restriction
A tetrahydrobiotin deficiency can manifest from a deficiency of 2 enzymes
- BH2 reductase
2. BH2 synthesis
How is GABA synthesized?
Glutamate -decarboxylase + PLP-> GABA
How is histamine produced?
Histidine -decarboxylase + PLP->
The major inhibitory neurotransmitter…
GABA
What is the GABA shunt?
GABA –> TCA cycle
Histamine is a vasocontrictor/dilator
Dilator
In general, how do anti-histamines work?
Receptor antagonists
* Not enzyme inhibitors **
2 popular examples of anti-histamines
H1 (benadryl), H2 (Zantac) blockers
From whom is creatine synthesized?
Arginine, Glycine & SAM
Where is creatine found?
Muscle, heart, brain
What is creatine?
Reservoir of high energy-bonds
- Accepts phosphate during rest
- Donates phosphate during contraction
What enzyme modulates the transition of creatine to creatine phosphate?
Creatine kinase (CK, CPK)
NO is synthesized from which AA & which enzyme?
Arginine (NO mARG!)
* NO synthase (releases cirtulline)
What can be used as a vasodilator during an MI?
Nitroglycerin
Where is NO synthesized?
Endothelium of blood vessels
* Causes vasodilation
The NO cascade…
Guanylate cyclase –> cGMP –> relaxation vessels –> phosphodiesterase
(Second messenger cascade)
What is melanin?
A polymer of pigmented molecules derived from tyrosine
The enzyme deficiency in albinism?
Tyrosinase (tyrosine –> melanin)
The more severe form of albinism
Occulocutaneous albinism
The tripeptide glutathione is composed of:
GCG
- glutamate
- cysteine
- glycine
Glutathione acts as an anti-oxidant by:
H202 –> H20 (reduced); GSH –> GSSG (reduced)
* Important for integrity of cell membrane
The 2 reactions that require vitamin B12
- Methionine synthase (homocysteine –> methionine)
2. Methylmalonyl coA mutase
The 4 AA’s that can be used by the odd-chain FA oxidation
- Methionine
- Isoleucine
- Valine
- Threonine
Methionine synthase requires 2 vitamins
- B12
2. B9 (folic acid – methylated-THF)
Lack of intrinsic factor will result in…
Pernicious anemia (inability to take up B12) * B9 will be tied up methylated and anemia will result
Vitamin B9 is referred to as
Folic acid
T/F Proks can synthesize B9
TRUE
What are 2 drugs that involve folic acid?
- Methotrexate (competitive inhibitor of dihydrofolate reductase)
- Sulfonamides (Dihydropterin synthase in proks from PABA)
Sulfonamides
Competitively inhibit dihydropterin synthase in proks from PABA (make folic acid)
Glycine & Serine can be interconverted using
B9 (folic acid) & serine hydromethyl transferase
The dihydrofolate reductase reaction requires
2 NADPH
How do we get from histidine to flutamate?
FIGlu (donates formino group to folate)
* Deficiency in folate will result in elevated FIGlu
How do you test for folic acid deficiency?
FIGlu levels
Folic acid is generally used for…
1 carbon transfer reactions (DNA/RNA synthesis), degradation of histadine, regeneration of methionine, serine glycine
A common B12 & folic acid deficiency can lead to
Megaloblastic anemia
Difference between NE & Epi
NE - nervous system
Epi - functions like a hormone
Difference between epinepherine & cortisol
Cortisol - GNG
Epi – glycogenolysis
Which amino acid promotes both insulin & glucagon release?
Arginine
Glucagon release is stimulated by these amino acids
Arginine, alanine
Insulin release is stimulated by these amino acids…
Arginine, leucine
Isoniazide
Can deplete the body of PLP (B6)
* Used for treatment of TB
Heme is used in…
Hemoglobin, cytochrome ETC, NO synthase, Catalase
Difference between heme synthesis in liver vs. bone marrow
Liver: inhibited by heme/hemein (product inhibited)
Erythroid: limited by Fe availability
Lead
Messes with ALADH & Zn-cofactors in ferrochelatase
Photosensivity will result once this compound accumulates…
HMB (hydromethylbilane)
Which enzymes of heme synthesis are in the mitochondria?
ALAS1/2, Ferrochelatase
5 porphrias
- ALAS2 (X-linked sideroblastic anemia)
- ALADH (Hereditary ALADH deficiency)
- HMB Syn/PDA (Acute intermittent porphyria)
- Congenital EPO porphyria (Uro synthase – serious)
- Porphyria Cutanea Tarda (Uro DC – often due to chronic liver disease)
What might you not treat someone with who has porphyria?
Barbituates (can stimulate cytomchrome p450 formation)
Difference between direct & indirect bilirubin
Direct = conjugated with gluconaric acid Indirect = unconjugated (with albumin)
Crigler-Najjer I, II & Gilber’s disease
Varying levels of severity of the UDP-gluconryl transferase enzyme
Dubin Johnson Syndrome
Deficient ABC transporter of bilirubin into the bile
Jaundice occurs when serum bilirubin is > ____
2 mg/dL
What hormone does adipose produce?
Leptin * Appetite supressor
What is the difference between Type 1, 2A/B muscle fibers?
1 - red - slow twitch, rich capillary supply, decreased glycogen storage
Which AA’s are synthesized from glucose?
Glutamate, Aspartate, Glycine
What is the GABA shunt?
GABA is recycled in the CNS
* Glutamate is synthesized de novo in the brain from BCAA
How is acetylcholine synthesized?
Requires choline from the diet
PE + methyl -SAM, THF, B12-> acetylcholine
Vitamin B1
- PDH
- Alpha-KG DH
- BCAA DH
Which cytochrome p450 is important in ethanol metabolism?
CYP2E1
- In chronic alcoholics, acetaminophin is processed more by CYP2E1 –> toxic compound
- NAPQ1 –> ROS/can lead to cell death
What can Acetaminophin poisioning in a chronic alcoholic be treated with?
Acetadote (N-acetyl-cysteine)
Describe the metabolism of alcohol.
ETOH -ADH-> Acetaldehyde -ALDH1(c)2(m)-> Acetate
- NADH produced, ALDH1 active at high ETOH concentrations & also MEOS (CYP2E1) more active
Describe the effects of chronic alcoholism
High NADH:NAD – unanble to carry out GNG, accumulation of lipids and fats in the liver (fatty liver)
Describe poisoning with methanol & ethylene glycol.
Both are substrates for ETOH DH.
- Can lead to formaldehyde & glycoaldehyde/oxalate
- Treat with ETOH or Fomepizole
- Requires bicarb/hemodialysis
Describe the effects of grapefruit ingestion while a patient is on statins.
Grapefruit inhibit CYP3A4 (required for statin control)
* A patient on statins who eats grapefruit regularly can have liver damage
Describe the relationship between Warfarin & Phenobarbital
Warfarin unduces CYP3A4 & Phenobarbital inactivates it
* Suddenly taking a patient off of phenobarbital can lead to massive bleeding
Describe LFT’s
B- bilirubin
P- proteins (albumin, clotting factors, etc.)
M- metabolites (ammonia, glucose)
E- enzymes (AST, ALT, GGT, ALP)
Describe the pre-beta, beta, and alpha serum protein bands
pre-beta: VLDL
beta: LDL
alpha: HDL
Describe the alpha-1 proteins
A1-Antitrypsin
AFP (alpha-fetoprotein) – elevated in HCC/testicular/ovarian cancer (mothers-low in Downs, high in spina bifida)
Transcortin (cortisol)
RBP (retinol)
Describe the band separations on serum protein electrophoresis.
Albumin, A-1, A-2, beta (includes CRP), gamma
Describe the alpha-2 proteins
Alpha-2-macroglobulin
Ceruloplasmin (Cu / also helpful in Fe metabolsim)
Haptoglobin (free Hb)
Describe the beta proteins
Transferrin
Hemopexin
Beta-lipoprotein
Describe the difference between serum and plasma
Serum – no clotting factors (let blood clot, centrifuge & take the supernatant) – preferred analysis
Plasma – includes clotting factors – need to have an anti-coagulant in the blood
Describe the gamma globulins
- Synthesized by plasma cells
- IgG - most abundant (mother–> fetus)
- IgM - infection
- IgE - allergy
- IgA - body secretions
- IgD - unknown
Which acute phase protein is released during inflammation? It is included in what band?
CRP (beta-globin)
Describe the platelet plug formation
G1A – binds to collagen
G1B – VWF binds to this on the platlet
G2B/3A – allows binding of fibrinogen