Biochemistry Flashcards
which amino acid is NOT a neutral polar amino acid?
a) serine
b) glutamine
c) cysteine
d) asparagine
e) threonine
cysteine - contains sulphur and is NONPOLAR
What is an imino acid
An imino group is when the nitrogen forms its fourth bond is attached to another carbon atom (over all bonded to two carbons) to form a ring structure
Name an acidic amino acid example
Aspartic acid
Glutamic acid
(Contain a COOH group on their side chain)
Basic amino acid example
Arginine or lysine
They have an amine group on the side chain
Name an example of a non polar amino acid
Glycine
Name a sulphur containing amino acid
Cysteine
Lysozyme hydrolyses which bonds in bacterial cell walls
Beta 1,4 linkage between NAG and NAM
What is a zymogen
Inactive forms of enzymes
Eg pepsinogen
Describe the Activation of pepsinogen
1) chief cells produce pepsinogens
2) parietal cells produce HCl which lowers pH
3) at low pH pepsinogen autocleaves itself and becomes pepsin
Describe the activation of trypsinogen
1) enterokinase enzymes in cell wall of interstinal cells partially activate trypsinogen to trypsin
2) trypsin then activates more zymogens including chymotrypsinogen
Chymotrypsinogen activation
Chymotrypsin is a protease enzyme. Benefits of activation is that it’s faster than synthesising the enzyme from scratch.
1) trypsin converts chymotrypsinogen -> pi-chymotrypsin by breaking the peptide bond between residues 15 and 16
2) autoactivation by removal of serine and arginine (14,15) to form delta-chymotrypsin
3) residues 148,147 cut to form alpha-chymotrypsin
which function is NOT performed by mitochondria?
a) steroid synthesis
b) cell signalling
c) inducing apoptosis
d) produce ammonia
e) produce reactive oxygen species
d) produce ammonia
mitochondria in the liver have enzymes that detoxify ammonia
what is the cytoskeleton composed of?
microtubules
microfilaments
intermediate filaments
what are the roles of the nucleolus?
- synthesis of rRNA
- synthesis of immature ribosomes
which one is NOT a function of smooth ER?
a) lipid synthesis
b) calcium ion storage
c) drug detoxification
d) protein synthesis
e) steroid metabolism
d) protein synthesis
protein synthesis occurs in Rough ER
what is the difference between gram positive and gram negative bacteria?
gram positive:
- thick peptidoglycan wall
- only one membrane
- easily stained
gram negative:
- thin peptidoglycan wall
- two membranes, plasma and outer
- less easily stained
list some structural features of bacterial cells not present in eukaryotic cells
- capsule
- cell wall (peptidoglycan)
- mesosomes
- plasmids
- lack membrane bound nucleus
- smaller ribosomes
what is an acid?
can donate a proton, gaining a negative charge
what is an alkali?
can accept a proton, gaining a positive charge
what are the sources of acids in the body?
carbonic acid - from Carbon dioxide
keto acids - from breakdown of triglycerides
lactic acid - product of anaerobic respiration
sulphuric acids - metabolism of AA containing sulphur
what are the main buffers in the human body?
- haemoglobin
- proteins
- phosphate
- bicarbonate
what is “buffer capacity”?
the extent to which it can resist pH change
what is the dissociation constant?
the equilibrium constant measuring the dissociation of a larger object into smaller objects reversibly. denoted as Kd
what is the relevance of the henderson-hasselbach equation? what is the pKa?
it predicts the behaviours of buffer solutions.
pH=pK + log ( [A-]/[HA] )
pKa= acid dissociation constant
pKa = 50% of acid is dissociated/ionised
the lower the pKa value, the stronger the acid
when pH=pKa it means there are equal concentrations of acid and conjugate base