Biochemistry Flashcards
Joints Okazaki fragments
DNA ligase
Catalyzes the transcription of DNA to synthesize precursors of mRNA
RNAP or POL II (RNA polymerase)
Seals the DNA nicks
DNA ligase
Negative supercoils
Topoisomerase
Unwinding of DNA (positive supercoils)
Helicase
Proofreading of DNA
Exonuclease
3’ to 5’ direction
Amino acids in solution at neutral pH will predominantly have two charges (negative/positive)
Zwitterion/dipolar ion
RLE in heme porphyrin synthesis
ALA syntahse
Substrates for heme synthesis
Glycine and succinyl CoA
RNA polymerase has 2 units, which are for:
1) Sigma
2) Rho
1) Sigma: initiation
2) Rho factor: termination
Carboxylation of pyruvate to oxaloacetate
Pyruvate carboxylase
Anaplerotic reaction: reaction that links glycolysis with Kreb’s cycle
RLE in urea cycle
Carbamoyl Phosphate Synthetase I (mitochondria)
Cycles that happen in both cytosol and mitochondria
1) Heme synthesis
2) Urea cycle
3) Gluconeogenesis
“HUG”
RLE for glycolysis
Phosphofructokinase
Inhibited by sodium stibogluconate (DOC leishmaniasis)
Enzyme responsible for disulfiram reaction
Aldehyde dehydrogenase
Metronidazole, Cephalosoporin, Procarbazine
Enzyme inhibited by Orlistat
Lipase
Helps reduce TG (dietary fats)
Enzyme inhibited by Cilastatin
Renal dihydropeptidase inhibitor
Given in combination with Imipenem
Jumping genes
Transposons
Sequences of DNA that can move around to different positions within the genome
Mirror images
Enantiomers
Chargaff’s rule
A=T
G=C (3 bonds, stronger, higher melting point)
Avidin
Protein found in raw egg white
Inhibit the absorption of biotin
Deficiency in hereditary spherocytosis
Spectrin
Termination codon/Stop codon
UAA
UGA
UAG
Mutations involving the stop codons
Non sense codon
Sequence pattern of nucleotides in a DNA sequence or amino acids in a protein
Motifs
Responsible for protein folding
Chaperone
Desmolase is a type of
Chaperone
Unhealthy fats and increases the risk of CVD
Saturated fats (single bonds)
Essential fatty acids are which type of fats
Unsaturated (double bonds) FA
Substance responsible for thrombus formation
Thromboxane A2
For platelet aggregation, vasoconstriction, and thrombus formation
Basic amino acids
HAL
Histidine
Arginine
Lysine
Reason of ketosis formation in fasting
Mobilization of FA
Teratogenic vitamin
Vitamin A
Southern blot
Northern blot
Western blot
DNA
RNA
Proteins
NRAM (natural resistance associated macrophage protein)
Mycobacterium avium intracellulare
MTB
BEG gene
MAI (or MTB)
Sugar attached to Blood type A
NAC
N-acetyglucosamine fucose
Sugar attached to Blood type B
D-galactose
Smallest gene for DNA expression
Cistron
Protein infectious particle
Prion