Biochem Flashcards
pre-pro sequence degradation
- when is pre degraded: what is it replaced
- when is pro degraded; function
- when is pro not degraded, what is its pro?
- how to send protein to lysosome; what happens w/o
- after protein enters RER -> will add cysteine on end
- after protein enters Golgi -> helps with folding and packaging
- insulin, it is c-peptide
- add mannose 6 phosphate, protein will get exocytosed
I cell disease
- what happens
- mutation
- sxs
- prognosis
- looks like, dx
- mannose 6 phosphate
- AR, deficiency of GLC-NAC phosphotransferase
- coarse facial feature, hepatomegaly, splenomegaly, club foot, growth retardation
- die by 10 yrs of age
- hurlers, aminoassay
How to send something to Mito
- accompanied by
- add short end terminal sequence
- heat shock protein 70
Recptors
- alpha 1
- alpha 2
- B1
- B2
- V1
- V2
- SM contraction, Gq
- decrease pre-synaptic release of NE; Gi
- in crease CO, HR, stroke vol, increase Renin from JG cells; Gs
- SM relaxation; Gs
- vasoconstriction
- Aquoporin II channels
G- alpha- s pathway
- enzyme needed
- AC-> cAMP -> PKA
- mg
cGMP
- ligand
- pathway
- NO
- activate GC -> cGMP -> PKG -> SM relaxation -> vasodilation
Ca as second messenger
- IP3- DAG: pathway ; used in
- Ca-Calmoduin
- Ca
- galpha -> PLC -> PIP2 -> Ip3 -> binds to SR and releases Ca and DAG -> PKS ; all hypothalamic hormones except CRH, and SM contraction w/ Nor-epi / epi
- SM contraction by distention
- 2nd messenger for gastrin
Ca-Calmodulin
- pathway
- how is it activated
- Ca binds to calmodulin -> activates MLCK -> myosin ATPase active -> cross bridging
- stretch; in uterus will be by vol of baby
Tyrosine Kinase
- used as
- needs
- what med inhibits
- 2nd messenger for all growth factors
- mg
- ematinib (ALL, CML, GIST)
Phosphodiesterase
- what is it
- what happens when blocked
- popular drug that does this: other actions
- platelet
- penis: what happens, meds, not allowed to take
- degrades cAMP and cGMP
- increased cAMP and cGMP -> vasodilation
- caffeine; also blocks adenosine receptors to prevent drowsiness which causes increase in Epi which causes increase in symp, which causes increase in dopamine and causes euphoria
- PDE is on platelets and can therefore be used to prevent platelet aggregation
- PDE5 found in corpus cavernosum and when blocked allows for dilation for erection ; sildenafil and tadalafil; nitro
Collagen
- what is it
- SCAB
- what is needed
- synthesis
- most common AA in collagen
- wound contraction
- simple scarring
- desmoplasia; desmoblast
- keloid: what is it, seen in, sequelae; tx
- most abundant protein in body
- skint, CT, arteries, BM
- vit C for hydroxylation of proline and lysine
- synthesis of pre-pro alpha chain-> pro alpha chain is made -> hydroxylation of proline and lysine -> glycosylation of hydroxylysine -> 3 pro-alpha chains linked by hydrogen bonds -> triple helix is packaged into vessicle and secreted out -> procollagen peptidase cleaves ends -> collagen goes into fibril -> mult fibrils used
- guanine (every 3rd AA) and proline (responsbile for kinks/ bends)
- myofibrils
- fibroblasts
- process that produces scar tissue; benign tumor made up of desmoblast
- excessive collagen deposition post insult; african, asian, hispanic; if try to remove will grow back even bigger; excise it and then inject steroids to reduce the scarring OR remove and take straight for radiation on area
Ehler- Danlos
- mutation
- what happens
- sxs
- AD or AR caused by def of lysyl hydroxylase or pro-collagen peptidase (more common)
- faulty collagen synthesis leads to highly stretchable skin
- hyper elastic skin, hypermobile joints, easy bruising (bc decreased strength and support of vasc)
Osteo Imperfecta
- mutation
- sxs
- AD, lysine replaced with bulky AA
- thin skin, brittle bones, blue sclera can see choroidal v
Collagen Vasc Dx
- CREST
- Scleroderma
- Progressive systemic sclerosis
- Lupus
- RA
- anti centromere
- anti-SCL7
- anti scl7
- anti - DsDNA, anto-smith, anti phospholipid antibody
- anti- CCP
Keratin
- what does it do
- contains lots of
- seen in
- bonds
- stain for
- tensile strength
- cysteine
- outer layer of skin, hair, nails, cornea
- disulfide, easily broken w/ heat
- tumor of epi origin
Elastin
- used for
- contains
- protein and links
- lysyl oxidase
- main Dx
- stretch and recoiling
- hydroxy proline
- tropoelastin linked by desmosine and isodesmosine
- reaction that links tropoelastin need Copper
- Marfan Dx, FBN1 -> fibrillin
Elastase
- what is it
- protects from
- enzyme that destroys elastin
- a- 1- antitrypsin protects lungs and liver from elastase
AA
- glycine: size, function in CNS
- aromatic AA: 3, recognized by
- basic AA: 2; structure, recognized by
- acidic AA: 2; function; structure
- sulfur containing: 2; function, hormones
- AA that form N bonds: 3
- AA in O bonds: 3; contain
- branched chain AA: 3, pathology, converted into
- tryptophan: precursor for, drug
- tyrosine: function, made from
- ketogenic
- glucogenic: function, 7 not
- gluco and keto: PITTT
- essential: PVT TIM HALL
- smallest; inhibitory NT of SC (opens up cl channels in cells hyper-polarizing it)
- phenylalanine, tryptophan, tyrosine, recognized by chymotrypsin
- lys, arg -> contain extra NH3 that is positively charge making them want to go to negative charge; recognized by trypsin
- aspartic a and glutamic a; stimulate NMDA; have extra neg charge and will more towards positive
- cysteine and methionine; help form di-sulfide bonds (hormones: prolactin, inhibin, growth hormone, insulin)
- asparagine and glutamine
- serine, threonine, tyrosine; contain hydroxy groups on side chains
- leucine, isoleucine, valine; Maple Syrup Urine Dx; acetyl CoA or succinyl CoA -> can be used for energy
- niacin and serotonin; sumatriptan -> used for migraines
- makes dopamine -> NE -> epi; phenylalanine;
- leucine and lysine; will be turned into ketone bodies via ketogenesis when there is extreme starvation
- can be converted into glucose via gluconeogenesis;
- phenylalanine, isoleucine, tryptphan, tyrosine, threonine
- phenylalanine, valine, threonine, tryptohpan, isoleucine, methionine, histidine, arginine, lysine, leucine
AA related
- PKU
- Albinism
- Alcaptonuria
- maple syrup urine dx
- cystinuria
- def of phenylalanine hydroxylase; accumulation of phenylalanine and cant convert to tyrosine
- deficiency of tyrosinase; cant turn DOPA into melanin
- homo1-2 doxygenase; cant break down phenylalanine or tyrosine
- deficiency of branched-chain alpha-keto acid dehydrogenase; cant break down leucine, isoleucine, valine
- SLC3A1 and SLC7A9; cannot reabsorb Cysteine, Ornithine, lysine, arginine (COLA)
Anabolic vs Catabolism
- occurs
- 3 pathways occur in both
- A: cytoplasm, C: mito
- gluconeogenesis, urea cycle, heme
Source of energy
- glucose
- protein/fat
- how many calories
- 40% energy
- 30 % each
- glucose and protein are 4 cal per gram and fat is 9 calories per gram
Energy Use: normal, stressful, extreme stress
- brain
- heart
- muscle
- RBC
- glucose, glucose, ketone
- FFA
- glucose, FFA, FFA
- glucose
How long will energy last
- plasma gluc
- liver glycogen
- proteolysis
- lipolysis
- ketogenesis
- 2-4 hours
- 24-48 hrs
- start at 36 hours
- start at 36 hrs
- after 36 hrs
glut transporters
- 1
- 2
- 3
- 4
- 5
- RBC/ CNS; responsible for basal glucose transport
- in hepatocytes and pancreatic beat cells; reg release of insulin
- kidney, brain, placenta
- adipocytes and skeletal muscle
- fructose transport; GI and spermatocytes
Glycolysis
- ATP
- NADH
- pyruvate
- occurs in
- F6P to F-1,6 BP/ rate limiting eznyme;
- what happens when there is increased activity
- 2
- 2
- 2
- cytoplasm
- enzyme used is PFK1 (RLE); PFK1 is activated by AMP and build up of citrate inhibits;
- PFK1 doesnt work fast enough and there becomes build up of F6P which is turned into F-2,6- BP by PFK2 (activated by insulin) which will increase the amount of PFK 1 made so that more F6P can be turned into F- 16- BP
Creation of 2,3 - BPG
- what happens
- when
- sequelae
- shunt G -1,3- BP to 2,3 BPG instead of it being made into phosphoglycerate
- during ischemia
- increase O2 delivery to tissue by decreasing affinity of hemoglobin for O2; will fix hypoxia and allows for G-1,3- BP to go back to phosphoglycerate
Gluconeogenesis
- location
- controlled by
- irreversible steps: PEP
- irreversible steps: F 1,6 BP
- irreversible steps: G6P
- what else can DHAP make
- other source of pyruvate
- metformin: MOA, SE
- liver, adrenal medulla
- epi and glucagon
- PEP to pyruvate, pyruvate must be turned into OAA in mitochondria and OAA goes back into cytoplasm to be made back into PEP by PEP carboxylase
- F - 1,6 - BP back into F-6-P by Fructose 1-6- biphosphatase
- G6p to glucose with G- 6- phosphatase
- glycerol, used in tri- glyceride; so glycerol can be made back into DHAP for gluconeogenesis if needed
- alanine, glutamate
- inhibits pyruvate carboxylase -> cannot turn pyruvate to OAA -> inhibit hepatic production of glucose; lactic acidosis
Cori Cycle
- how does it work
- ATP
- what happens w/ contd low O2
- 2 lactate -> 2 pyruvate -> glucose -> to muscle -> glucose -> 2 pyruvate -> no O2 causes -> 2 lactate -> back to liver
- loss of 4 ATP
- will be made into lactate and go into lactic acidosis