BIOCHEM Flashcards
How is hnRNA processed before it leaves the nucleus?
5’ cap
Poly A tail
Splicing out of introns
mRNA leaves nucleus
How does hexokinase differ from glucokinase?
Hexokinase: everywhere. It is not induced by insulin. It has a low Km and a low Vmax.
Glucokinase is only in the pancreas (beta cells) and liver. It IS induced by insulin. It has a high Km and a low Vmax.
What is the result of a glycolytic enzyme deficiency?
RBC hemolysis
What is the result of a deficiency in pyruvate dehydrogenase?
Neurological effects
Rate limiting enzyme of hexose monophosphate pathway
Glucose 6 phosphate dehydrogenase
Rate limiting enzyme of fatty acid synthesis
Acetyl CoA carboxylase
Rate limiting enzyme of beta oxidation of fatty acids
carnitine acyltransferase
Rate limiting enzyme of ketone body synthesis
HMG CoA synthase
Rate limiting enzyme of cholesterol synthesis
HMG CoA reductase
Where does fatty acid degradation take place?
Mitochondria
Where does fatty acid synthesis take place?
Cytoplasm
Where does glycolysis take place?
Cytoplasm
Where does the TCA cycle take place?
Mitochondria
Where is the ETC/oxidative phosphorylation?
Mitochondria
Where does gluconeogenesis take place?
Mitochondria AND cytoplasm
Enzyme deficient in Fructose intolerance
Aldolase B
Enzyme deficient in Essential fructosuria
Frucokinase
Enzyme deficient in Classic galactosemia
Galactose-1-phosphate uridyltransferase
Tryptophan is the derivative of
Niacin (becomes NAD+/NADP+) –requires B6
Serotonin (becomes melatonin)–requires BH4
Histidine is derivative of
Histamine. This conversion requires B6.
Glycine is derivative of
Porphyrin (which gets broken down into heme.) This requires B6.
Arginine is derivative of (3)
Creatine
Urea
Nitric oxide
Glutamate is derivative of
GABA (requires B6)
Glutathione
BH4 is required for which 3 conversions?
Phenylalanine –> Tyrosine
Tyrosine –> Dopa
Tryptophan –> Serotonin
Rate limiting enzyme in heme synthesis
Conversion of glycine and succinyl CoA to delta-Aminolevulinate acid
Carbamoyl phosphate synthetase I
Involved in urea cycle which takes place in mitochondria.
Gets nitrogen from ammonium
Carbamoyl phosphate synthetase II
Involved in pyrimidine synthesis which takes place in the cytosol.
Gets nitrogen from glutamine.
Most common urea cycle disorder and its main characteristics
ORNITHINE TRANSCARBAMOYLASE DEFICIENCY.
X-linked recessive**
Interferes with body’s ability to eliminate ammonia
Excess carbamoyl phosphate is converted to orotic acid (part of the pyrimidine synthesis pathway.)
Increased orotic acid in blood and urine
Decreased BUN (because urea cycle is not occurring)
Symptoms of hyperammonemia (hepatoencephalopathy).
Enzyme that converts phenylalanine to tyrosine
Phenylalanine hydroxylase
Enzyme that converts tyrosine to dopa
Tyrosine hydroxylase
Enzyme that converts dopa to dopamine
Dopa decarboxylase
*this requires B6
Enzyme deficiency that leads to mental retardation, growth retardation, seizures, fair skin, eczema, and a musty body odor
Phenylalanine hydroxlyase or tetrahydrobiopterin cofactor.
This autosomal recessive d/o of AROMATIC amino acid metabolism leads to excess phenylketones in the urine (phenylacetate, phenyllactate, and phenylpyruvate)
Enzyme deficient in patient with dark connective tissue, debilitating arthralgias, brown pigmented sclera, and urine that turns black on prolonged exposure to air
This is alcaptonuria. It is the deficiency of homogentistic acid oxidase in the degradative pathway of tyrosine to fumarate, causing homogentisate to accumulate.
Its autosomal recessive.
3 possibily causes of homocystinuria
Cystathionine synthase deficiency
Decreased affinity of cystathionine synthase for pyridoxal phosphate
Homocysteine methyltransferase deficiency
2 diseases that can cause lens subluxation
Marfans
Homocystinuria
Findings in homocystinuria
Increased homocystine in urine MR Osteoporosis Tall stature Kyphosis Lens subluxation (downward, inward) Atherosclerosis ( -- > stroke, MI)
Enyme that converts homocysteine to methionine and cofactor
Homocysteine methyltransferase
B12
Enzyme that converts homocysteine to cystathionine and cofactor
Cystathionine synthase
B6
Cystinuria defect
Renal tubular amino acid transporter for COLA –cysteine, ornithine, lysine, and arginine. It is found in the PCT of the kidneys. This is autosomal recessive and can lead to renal staghorn calculi!
Enzyme deficient in Maple Syrup Urine Disease
alpha-ketoacid dehydrogenase (B1)
Causes increased leucine, isoleucine, valine in the urine –particularly leucine.
Autosomal recessive.
Hartnup disease is characterized by what defect
Neutral amino acid transporter on renal and ntestinal epithelial cells. Thus, we can’t use tryptophan to make niacin (B3), leading to PELLAGRA (dermatitis, dementia, diarrhea, death.)
Rate limtiing enzyme of glycolysis
Phosphofructokinase
Rate limiting enzyme of gluconeogenesis
Fructose 1,6 bisphosphatase
Rate limiting enzyme of TCA cycle
Isocitrate dehydrogenase
Rate limiting enzyme of glycogen synthesis
Glycogen synthase
Rate limiting enzyme of glycogenolysis
Glycogen phosphorylase
Rate limiting step of purine synthesis
Glutamine PRPP aminotransferase
Rate limiting step in pyrimidine synthesis
CPS II
Sources of carbon in formation of purines
CO2
Glycine
Tetrahydrofolate
Sources of carbon in formation of pyrimidines
CO2
Aspartate
What accounts for + charge o histones
Lysine, arginine
what accounts for - charge of DNA
phosphate groups
Transition mutation
Mutation that substitutes a pyrimidine for a pyrimididine (or purine for purine)
Transversion mutation
Mutation that substitutes a purine for a pyrimidine or vice versa
Retardation, self-mutilation, aggression, hyperuricemia, gout, choreoathetosis – > which enzyme is deficient?
This is Lesch-Nyhan syndrome, which is the result of defective purine salvage due to absence of HGPRT. This enzyme should convert hypoxanthine –> IMP and guanine —> GMP. This causes excess uric acid production and de novo purine synthesis.
This d/o is X-linked recessive.
Adenosine deaminase deficiency pathogenesis
Excess ATP and dATP imbalances nucleotide pool via feedback inhibition of ribonucleotide reductase. This prevents DNA synthesis, thus decreasing lymphocyte count.
It is autosomal recessive.
Increased orotic acid in urine, megaloblastic anemia, failure to thrive, but NO hyperammonemia — > which enzyme is deficient?
This is OROTIC ACIDURIA.
Either orotate phosphoribosyl transferase and/or OMP decarboxylase is deficient, resulting in the inability to convert orotic acid to UMP (de novo pyrimidine synthesis pathway).
Its autosomal recessive. Give these patients uridine.
Role of DNA polymerase alpha
Replicates lagging strand
Synthesizes RNA primer
Role of DNA polymerase beta & delta
Repair DNA
Role of DNA polymerase gamma
Replicates mitochondrial DNA
Role of DNA polymerase delta
Replicates leading strand DNA
2 enzymes involved in hemoglobin synthesis that are inhibited by lead toxicity
Ferrochelatase
ALA dehydratase
Causes a microcytic hypochromic anemia with ringed sideroblasts (iron-laden macrophages in RBC precursors)
Alcoholic male presents with blistering lesions in sun-exposed areas, particularly the dorsum of the hands. He also has hypertrichosis and hyperpigmentation on the face.
- Dx?
- Enzyme deficient?
- Accumulated substrate?
Porphyria cutanea tarda (most common porphyria)
Uroporphyrinogen decarboxylase is deficient
Buildup of uroporphyrin causing tea-colored urine
Patient presents with a rash around the eyes, mouth, nose, and anus.
- Deficiency of?
- Associated sx with this deficiency
Zinc deficiency
This is known as acrodermatitis enteropathica.
Zinc deficiency can also cause anorexia, diarrhea, growth retardation, depressed mental function, impaired night vision, and infertility.
To what main 2 molecules is iron bound in human cells?
Myoglobin and ferritin
To what main 2 molecules is iron bound in blood?
Hb
Transferrin
Cause of Burton’s lines in lead poisoning
Lead interferes with normal remodeling of cartilage due to the interruption of calcium and Vit D homeostasis
Cancer associated with arsenic
Basal and squamous cell CAs
Peeling of the fingertips – what do I have?
Either mercury poisoning or Kawasaki’s disease
It’s known as acrodynia.
Organs affected by excess cadmium
Bone –osteoporosis/osteomalacia
Kidney injury
Lungs–increased risk of lung cancer