Basic structural and functional features of cells and their organelles I & II Flashcards
Light microscope (LM)
In a light microscope, visible light is passed through the specimen then through glass lenses. The lenses refract (bend) in such a way that the image of the specimen is magnified as it is projected into the eye or into the camera.
Organelles
Until recently, the resolution barrier prevented cell biologists from using standard light microscopy when studying organelles, the membrane enclosed structures within eukaryotic cells. To see their structures in any detail required the development of a new instrument.
Electron microscope (EM)
In the 1950’s, the electron microscope was introduced to biology. Rather than focusing light, the electron microscope focuses a beam of electrons through the specimen or onto its surface. It was a 100 fold improvement from before.
Scanning electron microscope (SEM)
The scanning electron microscope is especially useful for detailed study of the topography of a specimen. The electron beam scans the surface of the sample, usually coated with a thin film of gold. The beam excites electrons on the surface, and these secondary electrons are detected by a device that translates the pattern of the electrons into an electronic signal sent to a video screen. The result is an image of the specimen’s surface that appears three-dimensional. It uses electromagnets as a lens.
Transmission electron microscope (TEM)
The transmission electron microscope is used to study the internal structure of cells. The TEM aims an electron beam through a very thin section of the specimen, much as a light microscope aims light through a sample on a slide. For the TEM, the specimen has been stained with atoms of heavy metals, which attach to certain cellular structures, thus enhancing the electron density of some parts of the cell more than others. The electrons passing through the specimen are scattered more in the denser regions, so fewer are transmitted. It uses electromagnets as a lens.
Cell fractionation
A useful technique for studying cell structure and function is cell fractionation. Broken-up cells are placed in a tube that is spun in a centrifuge. The largest cell components settle at the bottom as result of the force, forming a pellet. The liquid above the pellet is poured into a new tube and centrifuged at a higher speed for a longer time. This process is repeated several times, resulting in a series of pellets that consist of nuclei, mitochondria (and chloroplasts if the cells are from a photosynthetic organism), pieces of membrane, and ribosomes, the smallest components. This enables researchers to prepare specific cell components in bulk and identify their function, which is not possible with intact cells.
Cytosol
Inside all cells is a semifluid, jellylike substance called cytosol, in which subcellular components are suspended.
Eukaryotic cell
A major difference in eukaryotic and prokaryotic cells is the location of their DNA. In an eukaryotic cell, most of the DNA is in an organelle called the nucleus, which is bounded by a double membrane. Eukaryotic is from Greek and means true nucleus.
Prokaryotic cell
A major difference in eukaryotic and prokaryotic cells is the location of their DNA. In a prokaryotic cell, the DNA is concentrated in a region that is not membrane-enclosed, called the nucleoid. Prokaryotic is from Greek and means before nucleus, reflecting the earlier evolution of prokaryotes.
Nucleoid
In a prokaryotic cell, the DNA is concentrated in a region that is not membrane-enclosed, called the nucleoid.
Cytoplasm
The interior of either type of cell is called the cytoplasm. In eukaryotic cells, this term refers only to the region between the nucleus and the plasma membrane. Within the cytoplasm of an eukaryotic cell, suspended in cytosol, are a variety of organelles of specialized form and function. These membrane bounded structures are absent in prokaryotic cells, another distinction between eu and pro. Despite this, the cytoplasm in prokaryotic cells is not formless, and they contain regions surrounded by proteins within which specific reactions take place. The proteins are not membranes.
Fimbriae
Attachment structures on the surface of some prokaryotes.
Plasma membrane
At the boundary of every cell, the plasma membrane functions as a selective barrier that allows passage of enough oxygen, nutrients and wastes to service the entire cell. For each square micrometer of membrane, only a limited amount of a particular substance can cross per second, so the ratio of surface area to volume is critical.
Geometric relationships between surface area and volume
Using arbitrary units of length, we can calculate the cells surface area (in square units, or units^2), volume (in cubic units or unit^3), and ratio of surface area to volume. A high surface-to-volume ratio facilitates the exchange of materials between a cell and its environment. As a cell (or any other object) increases in size, its surface area grows proportionately less than its volume. Thus, a smaller object has a greater ratio of surface area to volume.
Animal cell
An eukaryotic cell that contains a nucleus with nuclear envelope, nucleolus and chromatin, plasma membrane, ribosomes, Golgi apparatus, lysosome, mitochondrion, peroxisome, microvilli, cytoskeleton made of microfilaments, intermediate filaments and microtubules, centrosomes, flagellum, and endoplasmatic reticulum, both smooth and rough.
Nucleus
Containing the nuclear envelope, nucleolus and chromatin. The nucleus contains most of the genes in the eukaryotic cell, (some genes are located in mitochondria and chloroplasts). It is usually the most conspicuous organelle averaging about 5 (my)m in diameter.
Nuclear envelope
Double membrane enclosing the nucleus, perforated by pores, continuous with ER. The nuclear envelope encloses the nucleus, separating its contents from the cytoplasm. The nuclear envelope is a double membrane, the two membranes each a lipid bilayer with associated proteins, are separated at 20-40 (my)m. The envelope is perforated by pore structures that are about 100 nm in diameter. At the lip of each pore, the inner and outer membranes of the nuclear envelope are continuous.
Nucleolus
Nonmembranous structure involved in production of ribosomes, a nucleus has one or more nucleoli.
Chromatin
Material consisting of DNA and proteins, visible in a dividing cell as individual condensed chromosomes. The complex of DNA and proteins making up chromosomes is called chromatin. When a cell is not dividing, stained chromatin appears as a diffuse mass in micrographs, and the chromosomes cannot be distinguished from one another, even though they are separate.
Ribosomes
(Small brown dots), complexes that make proteins, free in cytosol or bound to the rough ER or nuclear envelope. Ribosomes are complexes made of ribosomal RNA and protein, that are cellular components that carry out protein synthesis. They are not membrane bound and are therefore not considered organelles. Cells that have high rates of protein synthesis have particularly large numbers of ribosomes as well as prominent nucleoli, which makes sense given the role of nucleoli in ribosome assembly. Free ribosomes are suspended in the cytosol, and bound ribosomes are attached to the outside of the ER or nuclear envelope.
Microvilli
Projections that increase the cells surface area.
Endoplasmatic reticulum (ER)
Network of membranous sacs and tubes, active in membrane synthesis and other synthetic and metabolic processes, has rough (ribosome-studded) and smooth regions. The ER is such an extensive network of membranes that it accounts for more than half the total membrane in many eukaryotic cells. Endoplasmatic means within the cytoplasm, and reticulum means little net. It consists of a network of tubules and sacs called cisternae, (cisterna, reservoir for a liquid). It separates the internal compartment called the ER lumen, or cisternal space, from the cytosol. And because the ER membrane is continuous with the nuclear envelope, the space between the two is also continuous with ER lumen.
Plant cell
A plant cell contains the same things an animal cell does, except it also has a cell wall, chloroplast and a big central vacuole.
Nuclear lamina
A intricate protein structure called a pore complex lines each pore and plays an important role in the cell by regulating the entry and exit of proteins and RNAs as well as large complexes of macromolecules. Except at the pores, the nuclear side of the envelope is lined by nuclear lamina, a netlike array of protein filaments that maintains the shape of the nucleus by mechanically supporting the nuclear envelope.
Chromosomes
Within the nucleus, the DNA is organized into discrete units called chromosomes, structures that carry the genetic information. Each chromosome contains one long DNA molecule associated with many proteins. Some of the proteins help coil the DNA molecule of each chromosome, reducing its length and allowing it to fit into the nucleus.
Endomembrane system
Many different membranes of the eukaryotic cell are part of the endomembrane system, which indulges the nuclear envelope, the endoplasmic reticulum, the Golgi apparatus, lysosomes, various kinds of vesicles and vacuoles, and the plasma membrane. This system carries out a great variety of tasks in the cell, including synthesis of proteins, transport of proteins into membranes and organelles out of the cell, metabolism and movement of lipids, and detoxification of poisons.
Vesicles
The membranes of the endomembrane system are related either through direct physical continuity or by the transfer of membrane segments as tiny vesicles (sacs made of membrane). Despite these relationships, the various membranes are not identical in structure and function.
Smooth ER
There are two distinct, though connected, regions of the ER that differ in structure and function. Smooth ER and rough ER. Smooth ER is named so, because its outer surface lacks ribosomes.
Rough ER
There are two distinct, though connected, regions of the ER that differ in structure and function. Smooth ER and rough ER. Rough ER is studded with ribosomes on the outer surface of the membrane and thus appears rough through the electron microscope.