Antibody biology Flashcards

1
Q

which response do B cells activate

A

humoral response, responsible for producing antibodies.

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2
Q

where do b cells originate and mature

A

bone marrow

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3
Q

what happens to the B cells upon activation with antigens

A

they differentiate into plasma cells which are antibody-producing factories

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4
Q

what do plasma cells secrete

A

antibody of the same specificity as the membrane-bound immunoglobulin expressed by their B cell precursor

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5
Q

FAB

A

fragment antigen binding - responsible for binding antigen

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6
Q

FC

A

fragment crystallisable - responsible for effector function

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7
Q

what does the flexible hinge of IgG allow

A

allows for both arms to bind to many arrangements of antigens on pathogen surfaces

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8
Q

what are the two types of light chains

A

Lambda and Kappa

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9
Q

In any individual antibody molecule, are the chains the same or different

A

both light chains

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10
Q

which chain determines the class of antibodies

A

heavy chain

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11
Q

what do antibodies fold into

A

globular domains with distinctive 3d structure

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12
Q

what do the globular domains comprise of

A

2 beta sheets with a total of 7 or 8 antiparallel beta strands which are linked by disulphide bridge to form a beta parallel.
this folded structure is known as the “immunoglobulin fold”

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13
Q

what do hypervariable loops form

A

antigen binding site

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14
Q

what are hypervariable loops known as

A

complementarity-determining regions (CDRs)

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15
Q

what happens when VH (variable heavy) and VL (variable light) domains are paired

A

their 6 CDRs creae the antigen-binding site

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16
Q

what is an epitope

A

An epitope, also known as an antigenic determinant, is the specific region on an antigen that is recognized and bound by an antibody, a B cell receptor, or a T cell receptor.

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17
Q

what is a linear epitope

A

epitopes in protein antigens may comprise a single stretch of polypeptide chain

18
Q

what is a discontinuous epitope

A

3D folded like structure where the polypeptide chain is not continuous

19
Q

what can epitopes bind to

A

pockets, grooves, extended surfaces or projections in antigen binding sites

20
Q

each individual has an antibody repertoire (available antigen specificities) of approximately how many

20
Q

epitopes for antibodies are exposed where

A

on pathogen surfaces

21
Q

how is the antibody repertoire achieved

A

Ig genes are organised differently to other genes, in all cells except B cells, Ig genes are in fragmented form that cannot be expressed
Ig heavy and light chain loci consist of families of gene segments, arrayed sequentially along the chromosome
* They are inherited in this form through egg and sperm (germline)Therefore their arrangement is termed “germline configuration”
* In developing B cells, Ig gene segments must be rearranged to assemble functional light and heavy chain gene

22
Q

VH domain is encoded by what

A

V (encodes most of the V domain) ,D (diversity segment) and J (Joining segment) gene segments

23
Q

VL domain is encoded by what

A

V (encodes most of the V domain) and J (Joining segment) gene segments

24
at which point in B cell development does Ig gene rearrange in the H chain
early pro-b cell: D-J rearranging late pro - b cell: V-DJ rearranging
25
at which point in B cell development does Ig gene rearrange in the L chain
small pre b cell: V-J rearranging
26
when is the DNA spliced out
during early development of the B cell
27
what is the D gene segment joined to and what is the DJ segment joined to
D is joined to J and V is joined to DJ
28
what is recombination coded by
recombination signal sequences 12 and 23 base pair sequences
29
what is the 12/23 rule
genes with the 12 base pairs can recombine with 1 with the 23 base pair spacer
30
what is the mediator to organise the splicing
VDJ recombinase
31
what is the VDJ recombinase made of
RAG (recombination activating gene) 1 and RAG2 RAG-1 and RAG-2 proteins work together to initiate the recombination process by recognizing specific recombination signal sequences (RSS) flanking the variable (V), diversity (D), and joining (J) gene segments.
32
how does the RAG complex work
The RAGS bind to the 12 and 23 base pairs on the V and J RSS. The RAG complexes then come together and align the RSSs and cleaves the DNA at ends of gene segments. That forms a DNA hairpin and a clean break at the heptemer ends. The RAG complexes hold the DNA in place while broken ends rejoined by DNA repair enzymes = nonhomologous end-joining. Coding joint formed in chromosome, signal joint removed piece of circular DNA.
33
what creates the palindromic nucleotides
a nick that opens the hairpins can occur at several different positions
34
diversity of Ig repertoire generated by main processes Combinatorial diversity
many of the copies of each gene segment type which can combine in many different ways
35
diversity of Ig repertoire generated by main processes Junctional diversity
nucleotides added or subtracted at joints between gene segments during enzymatic steps
36
diversity of Ig repertoire generated by main processes combinations of light chain heavy chain
many different combinations of light and heavy chains v regions that pair to form antigen binding site
37
diversity of Ig repertoire generated by main processes somatic hypermutation
somatic hypermutation introduces point mutations into rearranged V region genes of activated B cells
38
in the CH gene what do the exons code for
individual Ig domain
39
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