Amino Acid Protiens Flashcards

1
Q

what do amino acids have

A

two functional groups a carboxylic group and a primary amine

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2
Q

what are the difference in the functional group

A

one is an acidic fnctional group and the other is a basic functional group

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3
Q

what does carboxylic acid group do

A

has a tendency to donate a proton so act as an acid

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4
Q

what does the amine group have

A

the tendency to gain a hydrogen

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5
Q

what do they exist as and what does this mean

A

a switterion have permanent positive charge and a permanent negative charge but overall are neutral

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6
Q

because they are ionic what does this mean

A

they have a high melting point and dissolve well in water bt poorly in non polar solvents

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7
Q

what does it exist like in room temperature

A

it is a white solid and acts like an ionic salt

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8
Q

what happens in strongly acidic condition

A

the amine group accepts a hydrogen and become protonated

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9
Q

what happens in strongly alkaline conditions

A

the oh group loses a hydrogen and become deprotonated and form a negative ion

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10
Q

when an amide reacts with another amide what form

A

an amide linkage

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11
Q

what happens when a protein is boiled with hcl of 6 mol/dm3

A

it breaks down to a mixure of all its constituent amino acids that make up the original protein

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12
Q

how are protein shapes maintained

A

hydrogen bonds, vdw force, disulphide bridges

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13
Q

why do proteins shape need to be maintains

A

they are vital to functions such as enzymes and structure

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14
Q

what are the two secondary shapes that proteins form

A

proteins form alpha helix or beta sheets

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15
Q

what is wool

A

is a protein fibre with a helix that is held together by hydrogen bonds

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16
Q

what happens when wools is stretched

A

the hydrogen bonds stretch and the fibre extends

17
Q

what happens when you release the tenision

A

allows the hydrogen bonds to return to their normal length and the fibre returns to its original shape

18
Q

what does wahing at high temperatures do to wool

A

can permanently break the hydrogen bonds and the garment may lose its shape

19
Q

where does the bonding exist between amino acids

A

between the c=o and the n-h

20
Q

what is the primary structure of a protein chain

A

sequence of the relevant amino acids held together by covalent bonds so relatively stable

21
Q

what is sencondry structure

A

3d shape held by hydriogen bonding and covalent bonds

22
Q

why can this structure be changed easily

A

hydrogen bonds are much weaker than covalent bonds so the structure can be changes in temperature and ph

23
Q

what is the tertiary structure

A

held together by a mix of hydrogen bonding ionic interaction and sulfur sulfur bonds forming globular shapes

24
Q

how do we determine the shape of protiens

A

we use x ray diffractions which can locate the actual position of atoms in space

25
Q

what is the first step to determining the protein

A

the primary structure to find out what type of amino acid present in the protiens by hydrolysing the protein by using 6mol/dm3 hcl