2 - Labs Tools and Techniques Flashcards
Overview of Microorganism Recovery and Identification
- Culture and biochemical tests
a. Type of culture and testing depends on anticipated pathogen and testing conditions (e.g. time,
reagents, instruments)
b. Distinguish between screening/presumptive tests and definitive tests.
(1) Screening/Presumptive – rapid, sensitive but possibly less specific, less expensive
(2) Definitive/Confirmatory – less rapid, more specific, more expensive
- Microscopy
- Immunodiagnostic tests
a. Antibody in patient’s serum
b. Antigen in patient’s specimen - Detection of microbial genes
Distinguish between screening/presumptive tests and definitive tests.
(1) Screening/Presumptive – rapid, sensitive but possibly less specific, less expensive
(2) Definitive/Confirmatory – less rapid, more specific, more expensive
Immunodiagnostic tests
two mentioned?
a. Antibody in patient’s serum
b. Antigen in patient’s specimen
Recovery and Identification of Bacteria
1. Laboratory isolation of bacteria
a. Isolation: To dilute the specimen in order to obtain colonies which are physically separated from each other (streak the specimen across agar culture media in a petri dish).
b. Pure culture: A single type of bacteria which is maintained free from other bacteria. Pure culture is required for biochemical testing.
c. Streaking technique (Four Quadrant Method) [See Fig.1]
d. Subculture technique for purity (picking a colony) [See Fig. 1]
a. Isolation:
To dilute the specimen in order to obtain colonies which are physically separated from each other (streak the specimen across agar culture media in a petri dish).
b. Pure culture:
A single type of bacteria which is maintained free from other bacteria. Pure culture is required for biochemical testing.
c. Streaking technique is:
d. Subculture technique for:
(Four Quadrant Method) [See Fig.1]
purity (picking a colony) [See Fig. 1]
Bacterial culture media:
a. Major Types:
(1) Nutrient (general) – provides general nutrients required for growth of most common bacteria.
(2) Enriched – provides general nutrients plus various enrichments required for growth of common and more fastidious bacteria (i.e. those requiring special nutrients).
(3) Selective – contains ingredients that restrict the growth of certain types of bacteria (e.g. antibiotics, inhibitory chemicals, etc.).
(4) Differential – contains ingredients that visually indicate certain chemical reactions caused by bacterial growth (e.g. detects pH change, H2S production, metabolism of specific chemicals).
Bacterial culture media:
a. Major Types:
(1) Nutrient (general) –
provides general nutrients required for growth of most common bacteria.
Bacterial culture media:
a. Major Types:
(2) Enriched –
provides general nutrients plus various enrichments required for growth of common and more fastidious bacteria (i.e. those requiring special nutrients).
Bacterial culture media:
a. Major Types:
(3) Selective –
contains ingredients that restrict the growth of certain types of bacteria (e.g. antibiotics, inhibitory chemicals, etc.).
Bacterial culture media:
a. Major Types:
(4) Differential –
contains ingredients that visually indicate certain chemical reactions caused by bacterial growth (e.g. detects pH change, H2S production, metabolism of specific chemicals).
Bacterial culture media:
a. Major Types:
- Nutrient
- Enriched
- Selective
- Differential
Bacterial culture media:
Examples:
- Blood Agar Plate (BAP)
- Supplemented Chocolate Sugar
- MacConkey Agar (MAC)
- Broth media (liquid)
(1) Blood Agar Plate (BAP) (usually sheep blood) –
moderately enriched medium on which colonies can be differentiated by hemolytic pattern – grows almost all bacteria, except Neisseria gonorrhoeae, Haemophilus influenzae, and a few others which require SCA. Permits visual observation of blood cell hemolysis (alpha, beta, gamma –seen #3 below).
Can be made to be selective with the addition of antibiotics.
(2) Supplemented Chocolate Agar (SCA) –
highly enriched media, grows most medically significant bacteria, but without visual display of certain colony characteristics. Example of SCA made selective with the addition of antibiotics: Thayer-Martin (TM) medium – inhibits most bacteria while allowing pathogenic Neisseria species to grow.
(3) MacConkey Agar (MAC) –
Selective & differential media for gram-negative bacilli – Contain inhibitors for gram-positive cocci/bacilli and gram-negative cocci
(a) Differentiates colony types based on utilization of ingredients; observe pH changes
(b) Others examples of similar media: Xylose-Lactose-Desoxycholate (XLD), Hektoen (HEK),
Salmonella-Shigella (SS), Eosin Methylene Blue (EMB).
(4) Broth media (liquid) –
such as Thioglycollate or Trypticase Soy Broth can have various enrichments; used for blood culture & other specimens; may or may not be selective for certain organisms.
- Bacterial colony morphology – usually interpreted at _____. – Growth is observed for colony
morphology (size, color & other distinguishing features
a. Significance of colony morphology – enables visual differentiation of many bacteria (e.g. hemolysis, carbohydrate utilization, general appearance)
b. Size: from less than ____ to more than _____
c. What else are we assessing?
d. What else are we assessing?
e. Hemolysis (only on blood agar) – due to _____
(1) Alpha – ___ ____ around the colony
(2) Beta – ___ ____ around the colony
(3) Gamma – ____ ____ in the red blood cells around the colony
18-24 h
1 mm diameter to more than 4 mm
assessing 3rd: Surface texture: e.g. smooth, rough, wrinkled, etc.
Assessing 4th: Color: natural pigment or due to pH indicator
bacterial production of enzymes which alter the
hemoglobin of red blood cells
(1) Alpha – green zone around the colony
(2) Beta – clear zone around the colony
(3) Gamma – no change in the red blood cells around the colony
bacterial colony morphology interpreted at
5 things we observe?
18-24 hrs
Distinguishing features Size Surface texture Color Hemolysis (only on blood agar)
e. Hemolysis (only on blood agar) – due to _____
(1) Alpha – ___ ____ around the colony
(2) Beta – ___ ____ around the colony
(3) Gamma – ____ ____ in the red blood cells around the colony
bacterial production of enzymes which alter the
hemoglobin of red blood cells
(1) Alpha – green zone around the colony
(2) Beta – clear zone around the colony
(3) Gamma – no change in the red blood cells around the colony
Recovery and Identification of Bacteria
- Microscopic exam - look for?
- Biochemical Identification Tests
a. Principle – Tests for presence or production of certain enzymes or metabolic products
b. Examples – test tube version, kits (API), instrumentation (MicroScan)
c. Identification of most bacteria complete in about 1 to 2 days
d. Identification of mycobacteria (tuberculosis) ready in 2 to 6 weeks - Bacterial Identification (all are usually required for genus and species identification)
a. Gram stain
b. Culture characteristics
c. Biochemical tests
d. Time to ID – 6-48 hr (time for slow-growing bacteria such as tuberculosis may be 2 weeks or
more)
(Gram stain or various wet mount preparations) – cellular morphology and staining characteristics are useful
(Gram stain or various wet mount preparations) – 4. Microscopic exam - look for?
cellular morphology and staining characteristics are useful
- Biochemical Identification Tests
a. Principle – Tests for presence or production of _____
b. Examples –
c. Identification of most bacteria complete in about ____
d. Identification of mycobacteria (tuberculosis) ready in _______
a. certain enzymes or metabolic products
b. test tube version, kits (API), instrumentation (MicroScan)
c. Most bacteria: 1 to 2 days
d. mycobacteria (tuberculosis): 2 to 6 weeks
- Bacterial Identification (all are usually required for _____)
a. Gram stain
b. Culture characteristics
c. Biochemical tests
d. Time to ID – ______
genus and species identification
a. Gram stain
b. Culture Chracteristics
c. Biochemical Tests
d. Time to ID - 6-48 hr (time for slow-growing bacteria such as tuberculosis may be 2 weeks or more)
Recovery and Identification of Other Microbes
2. Molds
a. Cultivation – grow on media with ____which inhibit the growth of bacteria. Mycelial masses (colonies) will be visible in ____
b. Identification – direct microscopic exam of ____; microscopic exam of ____; few biochemical tests; few antigen detection tests
Molds
a. antibiotics (e.g. Sabouraud with antibiotics); 1 to 4 weeks
b. ID - mainly direct microscope of specimen or culture
(few tests available)