Week Two Review Notes Flashcards

1
Q

What is the cell theory?

A
  1. All living organisms are composed of cells.
  2. Cells are the smallest units of life.
  3. All cells come from pre-existing cells.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What are exceptions to the cell theory?

A
  1. Striated Muscle Cells: Multi-nucleated and much longer than typical cells.
  2. Giant Algae (e.g., Acetabularia): Single cells that can grow up to 10 cm โ€“ unusually large for a unicellular organism.
  3. Aseptate Fungal Hyphae: Contains many nuclei without dividing walls (septa), which contradicts the idea of cells being separate units.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What are the 7 functions of life?

A
  1. Metabolism
  2. Response
  3. Homeostasis
  4. Growth
  5. Reproduction
  6. Excretion
  7. Nutrition
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Explain surface area to volume ratio and cell size and how they are related?

A
  • As cells grow, their volume increases faster than surface area.
  • Small cells have a larger surface area: volume ratio, allowing for more efficient diffusion.
  • Large cells may struggle to exchange materials quickly enough to support life.

๐Ÿ“Œ Implication: Cells divide or become specialized (like root hairs or microvilli) to maintain high SA:Vol ratio.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What are the four steps of binary fission?

A
  1. DNA replication
  2. Cell elongation
  3. Division of cytoplasm
  4. Formation of two new cells
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

What are stem cells?

A

Undifferentiated cells with the ability to:
Divide repeatedly (self-renewal)
Differentiate into specialized cells

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Totipotent

A

Any cell including the placenta, found in the zygote.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Pluripotent

A

Any body cell but not placenta, found in embryonic stem cells

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Multipotent

A

Several related blood types, found in bone marrow and cord blood

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What are the differences between a light and an electron microscope?

A

๐Ÿ”ฌ Microscopy Techniques

๐Ÿ” Light Microscope (LM)
Uses light to illuminate specimen
Can view living specimens!
Lower resolution (200 nm) and magnification (~1500x)

โšก Electron Microscope (EM)
Uses beams of electrons
Much higher resolution (0.2 nm!)
Dead specimens only

Types of EM: Transmission (shows internal structures in detail)
and Scanning ( 3D images of surface structure)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What structure is present in prokaryotes but not bounded by a membrane?

A

Nucleoid region โ€“ where the circular DNA is located.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Which type of ribosome is found in prokaryotic cells?

A

70S ribosomes.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Name one condition that has been treated using stem cells, and explain how.

A

Stargardtโ€™s disease โ€“ embryonic stem cells are used to regenerate damaged retinal cells.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What is interphase?

A

The phase of the cell cycle where the cell grows, performs normal functions, and prepares for division; it is NOT part of mitosis.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What happens in the G1 phase of interphase?

A

The cell grows, produces proteins, and carries out metabolic activities.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What happens during the S phase?

A

DNA is replicated so each chromosome has two identical sister chromatids.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What happens during G2 phase?

A

The cell continues to grow and prepares for mitosis by producing microtubules and other needed proteins.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

What are cyclins?

A

A group of regulatory proteins that control progression of cells through the cell cycle by activating CDKs (cyclin-dependent kinases).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

How do cyclins regulate the cell cycle?

A

Cyclins bind to CDKs, activating them to phosphorylate target proteins that trigger specific cell cycle events.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

Why is the regulation of the cell cycle important?

A

It ensures that cells divide only when necessary, preventing uncontrolled growth (cancer).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

What happens during Prophase?

A

Chromosomes condense, spindle fibers form, and the nuclear envelope breaks down.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

What happens during Metaphase?

A

Chromosomes align at the metaphase plate (middle of the cell).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

What happens during Anaphase?

A

Sister chromatids separate and are pulled to opposite poles of the cell.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

What happens during Telophase?

A

Chromosomes uncoil, nuclear envelopes reform, and spindle fibers disintegrate.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
What structure helps animal cells divide but is absent in plant cells?
Centrioles โ€“ they organize spindle fibers in animal cells.
26
What does a high mitotic index indicate?
Rapid cell division โ€“ can be a sign of growth, repair, or cancer.
27
What is a mutagen?
A chemical or physical agent that causes changes (mutations) in DNA, potentially leading to cancer.
28
What is an oncogene?
A gene that, when mutated or overexpressed, promotes uncontrolled cell division and contributes to cancer development.
29
What is metastasis?
The spread of cancer cells from the original tumor to form secondary tumors in other tissues or organs.
30
Name three common mutagens.
UV radiation, tobacco smoke, X-rays
31
What are tumor suppressor genes?
Function: Prevent uncontrolled cell division by: - Repairing damaged DNA - Initiating apoptosis (programmed cell death) if damage is too severe - Inhibiting progression through the cell cycle Famous example: TP53, which codes for p53 protein. p53 halts the cycle at G1/S if DNA is damaged, allowing time for repair. Mutation effect: If inactivated by mutation, cells may divide uncontrollably โ†’ tumor formation. ๐Ÿ“Œ Think of tumor suppressors as the "brakes" of the cell cycle.
32
What are protooncogenes?
โšก Proto-oncogenes Function: Promote normal cell division and growth. These genes encode: - Growth factors - Receptors - Cell signaling molecules Oncogenes: When mutated or overexpressed, proto-oncogenes become oncogenes, which lead to excessive cell division. Examples: RAS gene, MYC gene ๐Ÿ“Œ Think of proto-oncogenes as the "accelerator" โ€“ when stuck down, cells divide too fast.
33
Outline the steps of cytokinesis in animal cells
๐Ÿงฌ Animal Cells: Cleavage Furrow Formation Occurs after telophase to split the cytoplasm. Steps: 1. Actin and myosin microfilaments assemble beneath the plasma membrane at the equator. 2. These filaments form a contractile ring. 3. The ring contracts, pulling the membrane inward. 4. A cleavage furrow forms โ€” a visible indentation. The membrane pinches in completely, dividing the cell into two daughter cells. ๐Ÿ“Œ Easy way to remember: โ€œAnimals pinch in two.โ€
34
Outline the steps of cytokinesis in plant cells.
Plant cells have a cell wall, so they canโ€™t pinch like animals. Steps: 1. Vesicles from the Golgi apparatus carry cell wall materials (like cellulose). 2. These vesicles accumulate at the center of the cell โ€” where the metaphase plate was. 3. Vesicles fuse together to form the cell plate. The cell plate grows outward toward the existing cell walls. 4. The membranes of the vesicles become new plasma membranes for each daughter cell. 5. Cellulose is deposited to form the new cell wall between the two cells. ๐Ÿ“Œ Easy way to remember: โ€œPlants build a wall.โ€
35
What is cohesion?
๐Ÿ”— Cohesion Water molecules stick to each other due to hydrogen bonding. Important for transport in xylem in plants โ€” water forms a continuous column. ๐Ÿง  Think: "Co-stick" = sticking together.
36
What is adhesion?
๐Ÿงฒ Adhesion Water molecules stick to other polar surfaces (like cell walls). Helps in capillary action, drawing water up narrow tubes in plant stems.
37
What is a monosaccharide?
๐Ÿ”น Monosaccharides (single sugars) Basic unit of carbs Examples: Glucose (Cโ‚†Hโ‚โ‚‚Oโ‚†) โ€“ main energy source Galactose, fructose ๐Ÿง  Function: Rapid energy source โ€“ easily absorbed and used in respiration.
38
What is a disaccharide?
๐Ÿ”— Disaccharides Two monosaccharides joined via condensation reaction (forms a glycosidic bond) Examples: Glucose + fructose โ†’ sucrose Glucose + glucose โ†’ maltose
39
What are triglycerides?
๐Ÿ›ข๏ธ Triglycerides 1 glycerol + 3 fatty acids (joined by condensation) Used for long-term energy storage, insulation, and protection Hydrophobic โ†’ stored in fat droplets
40
What is a phospholipid?
1 glycerol + 2 fatty acids + phosphate group Key component of cell membranes Amphipathic: Hydrophilic head Hydrophobic tails
41
Q1: What is the monomer of starch?
A1: ฮฑ-glucose
42
Q2: What is the monomer of glycogen?
A2: ฮฑ-glucose
43
Q3: What is the monomer of cellulose?
A3: ฮฒ-glucose
44
๐Ÿ”น Q4: What type of glycosidic bonds are found in amylose (a component of starch)?
A4: 1,4 glycosidic bonds (unbranched, helical)
45
๐Ÿ”น Q5: What type of glycosidic bonds are found in amylopectin?
A5: Both 1,4 and 1,6 glycosidic bonds (branched)
46
๐Ÿ”น Q6: How does glycogen differ from amylopectin in branching?
A6: Glycogen is more highly branched, with 1,6 bonds occurring more frequently.
47
๐Ÿ”น Q7: Why does glycogen have so many branches?
A7: More branches provide more terminal ends for quick glucose release โ€” ideal for animal energy demands.
48
๐Ÿ”น Q8: What makes cellulose different in bonding and structure?
A8: Cellulose has 1,4 ฮฒ-glycosidic bonds with alternating flipped ฮฒ-glucose molecules, forming straight, unbranched chains.
49
๐Ÿ”น Q9: What holds cellulose chains together?
A9: Hydrogen bonds between adjacent chains form microfibrils, providing strength to plant cell walls.
50
๐Ÿ”น Q10: What is the main biological function of starch?
A10: Energy storage in plants
51
๐Ÿ”น Q11: What is the function of glycogen?
A11: Energy storage in animals, mainly in liver and muscle cells
52
๐Ÿ”น Q12: What is the function of cellulose?
A12: Structural support in plant cell walls
53
Q13: Which polysaccharides are digestible by humans?
A13: Starch and glycogen are digestible. Cellulose is not โ€” humans lack the enzyme cellulase.
54
๐Ÿ”น Q14: Which polysaccharide forms a helical structure?
A14: Amylose, a component of starch
55
๐Ÿ”น Q15: Which polysaccharide forms rigid, rope-like structures?
A15: Cellulose โ€“ due to hydrogen-bonded microfibrils
56
Q17: Which polysaccharide is most rapidly mobilized for energy?
A17: Glycogen, due to its high degree of branching
57
๐Ÿ”น Q18: Why is starch ideal for storage in plants?
A18: It's insoluble, compact, and doesn't affect osmotic balance.
58
How is a peptide bond formed?
๐Ÿ”— Peptide Bond Formation (Condensation Reaction): Peptide bond forms between the amino group of one amino acid and the carboxyl group of another. Water (Hโ‚‚O) is released โ†’ it's a condensation reaction. ๐Ÿงช Reaction: Aminoย acidย 1+Aminoย acidย 2โ†’Dipeptide+H Many amino acids = polypeptide
59
What is the primary structure of a protein?
- Sequence of amino acids in a polypeptide. - Determined by DNA and held by peptide bonds.
60
What is the secondary structure of a protein?
- Local folding of chain due to hydrogen bonding. Common patterns: ฮฑ-helix ฮฒ-pleated sheet
61
What is the tertiary structure of a protein?
3D shape of the entire polypeptide. Stabilized by: - Hydrogen bonds - Ionic bonds - Disulfide bridges (covalent, strong) - Hydrophobic interactions
62
What is the quaternary structure of a protein?
- When a protein has two or more polypeptide chains (e.g., hemoglobin). - May involve prosthetic groups (non-polypeptide parts like iron in hemoglobin). ๐Ÿง  Protein shape = function!
63
Hemoglobin is a protein, what is its function?
Transport protein for oxygen in red blood cells
64
Immunoglobulins is a protein, what is its function?
Antibodies; identify and neutralize pathogens
65
What is the structure of DNA
๐Ÿ”ธ 2. Antiparallel Strands in DNA Double Helix DNA is made of two strands running in opposite directions โ†’ antiparallel One strand runs 5' โ†’ 3', the other runs 3' โ†’ 5' Strands are held together by hydrogen bonds between complementary bases The structure is a double helix, discovered by Watson & Crick using Rosalind Franklinโ€™s X-ray diffraction data
66
What does a phosphodiester bond do?
๐Ÿ“Œ Phosphodiester bonds connect nucleotides along a strand
67
What does a hydrogen bond do in DNA structure?
๐Ÿ“Œ Hydrogen bonds connect bases between strands
68
What does helicase do in DNA replication?
- Unwinds the double helix - Breaks hydrogen bonds between base pairs - Creates a replication fork
69
What does DNA polymerase do in DNA replication?
- Adds complementary nucleotides to the exposed strands - Always works 5โ€™ โ†’ 3โ€™ direction - On one strand (leading) it adds nucleotides continuously - On the lagging strand, it adds nucleotides in Okazaki fragments (discontinuous)
70
What was the Meselson Stalh experiment?
๐Ÿ”น The Setup: Bacteria grown in heavy nitrogen (ยนโตN) so their DNA became heavier Then transferred to light nitrogen (ยนโดN) medium and allowed to replicate ๐Ÿ”น Observations: After 1 generation: DNA was of intermediate density (not all light or heavy) After 2 generations: 50% light, 50% intermediate DNA ๐Ÿ”น Conclusion: Confirms semi-conservative model of DNA replication
71
What are the steps of PCR?
1. Denaturation (95ยฐC): DNA strands are separated by heating Annealing (50โ€“65ยฐC): 2. Primers bind to the start of the DNA segment to be copied 3. Extension (72ยฐC): Taq DNA polymerase adds nucleotides to build new strands
72
What does DNA polymerase III do?
- Function: Adds complementary nucleotides to the new DNA strand. - Works in the 5โ€™ โ†’ 3โ€™ direction only. - Main enzyme for synthesizing the leading and lagging strands. ๐Ÿง  Adds bases starting at RNA primer.
73
What does DNA polymerase I do?
- Function: Removes RNA primers and replaces them with DNA nucleotides. ๐Ÿง  It cleans up and fills the gaps left after RNA primers are removed.
74
What does primase do?
- Function: Synthesizes short RNA primers to provide a starting point for DNA polymerase III. - These primers are needed because DNA polymerase canโ€™t start a strand on its own. ๐Ÿง  RNA primer = โ€œstarter lineโ€ for replication.
75
What does Ligase do?
Function: Joins Okazaki fragments together on the lagging strand by forming phosphodiester bonds. Seals any breaks in the sugar-phosphate backbone. ๐Ÿ“Œ Think of it as the โ€œglueโ€ enzyme.
76
What is transcription?
- Converts DNA --> RNA ๐Ÿงฉ Purpose: To copy the genetic code from DNA into a single-stranded mRNA molecule, so it can leave the nucleus and go to a ribosome.
77
What are the steps of transcription?
๐Ÿ”„ Steps of Transcription: 1. Initiation: RNA polymerase binds to promoter on DNA Unwinds small section of DNA 2. Elongation: RNA polymerase builds mRNA strand using the antisense strand as template (3' โ†’ 5') mRNA is made 5' โ†’ 3' 3. Termination: RNA polymerase reaches terminator sequence โ†’ stops mRNA strand detaches and DNA re-zips ๐Ÿง  Only one DNA strand (template/antisense) is used to make mRNA.
78
What is translation?
- Converts mRNA --> protein ๐Ÿงฉ Purpose: To convert the message in mRNA (a sequence of codons) into a chain of amino acids โ†’ which folds into a protein!
79
What are the steps of translation?
1. Initiation: Ribosome binds to mRNA tRNA with anticodon UAC binds to start codon (AUG) Brings first amino acid = methionine 2. Elongation: Next tRNA binds to next codon Ribosome forms peptide bond between amino acids Ribosome shifts (translocates) โ†’ new codon enters A-site 3. Termination: Stop codon is reached No matching tRNA โ†’ ribosome releases polypeptide
80
What are codons?
Codon = 3 bases on mRNA Each codon codes for 1 amino acid
81
What is a mutation?
A change in the DNA base sequence that can affect the protein made.
82
Describe the mutation of sickle cell anemia?
๐Ÿงฌ Example: Sickle Cell Anemia - Mutation: DNA base changes from A to T - mRNA codon changes from GAG (glutamic acid) to GUG (valine) - Causes abnormal hemoglobin โ†’ sickle-shaped red blood cells โ†’ health issues