Week 7 Recall Questions Flashcards

1
Q

On a general level, what is photosynthesis?

A

• Photosynthesis: Process that converts light energy into chemical energy (sugars)

• CO2 + H2O + light —> [CNH2NON) + O2

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2
Q

Which organisms can perform photosynthesis?

What is a technical term for these organisms?

A

• Plants, protists and some bacteria
(really just bacteria)
— Eukaryotes simply evolved the ability to capitalize on these bacterias invention

• specifically cyanobacteria (descendants) does photo as Endosymbionts

• Done by photoautotrophs
— Energy from light, carbon from CO2

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3
Q

What is a chloroplast and what structures can you find in a chloroplast (membranes, spaces)?

A

• Occurs in free-living prokaryotic cells or in chloroplasts in eukaryotic cells (descendants of cyanobacteria)

• In part organized on internal membrane systems that photosynthetic pigments arranged on.
— chloroplast: intern membrane separate from inner membrane = thylakoid membrane = is arranged into Granum, which are stacks of membrane structures

• inner membrane (the original bacterial membrane)
• outer membrane archaen membrane
- ex: food vacuole.

• ribosomes
• stoma
• inner and outer membrane
• thylakoid
• Granum

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4
Q

What are the light (dependent) reactions, what is their function?

Where do they occur?

A
  1. Photo stage of photosynthesis
  • take energy from the photon of light and bind some of it in a chemical form that can be used by other processes in the cell.
  • Converts solar energy to chemical energy
  • Produces O2, ATP and NADP
  • All proteins involved in this have to be arranged in a membrane system that allows for a buildup of gradients
  • Site: thylakoid membrane
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5
Q

What is the Calvin Cycle, what is its function?

Where does it occur?

A
  1. Synthesis stage of photosynthesis
  • other processes are this part.
  • Can occur in dark + uses chemical energy from light rxns bound in ATP & NADPH (= indirectly light independent
  • Requires ATP and NADPH = get from light dependent rxns
  • Process of carbohydrates synthesis = converting CO2 to sugars
  • Reducing C in CO2 to a more energy rich carbon compounds in form of 1st G3P, then other things.
  • Site: stroma = comparable to cytosol of bacterial cell = everything outside thylakoid membrane but insider inner chloroplast membrane
  • If rxn occur in stroma no longer require thylakoid membrane
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6
Q

What is the general function of photosynthetic pigments?

What are 3 important pigments?

A

Photosynthetic pigments: Pigments in chloroplasts are used to absorb light energy

Absorption spectrum: (hint: what it absorbs is the inverse of what we see)

(Main pigment)
1. Chlorophyll a
- absorbs: red/blue
- Reflects: dark green

(Accessory pigments = absorbs energy and transfer it to chlorophyll a)
2. Chlorophyll b
- absorbs: wavelengths of blue & red spectrum
- Reflects: light green
3. Carotenoids
- absorbs: wavelengths of blue/green spectrum
- Reflects: yellow, orange, red
4. Anthocyanins
- absorbs: green/yellow
- Reflects: purple, blue, red

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7
Q

Which pigments use resonance transfer, which one uses electron transfer?

A

The pigments in Light harvesting complexes use resonance. The accessory pigments

The pigment chlorophyll a pair uses electron.

Background info:

Resonance Transfer:
• Transfer/capture the energy and not electron.
— electron falls back into ground state and as does so a new pigment molecule available that takes the energy and uses it to get its own electrons excited, then that pigment’s electrons will fall back down to ground state, etc.
— Electron stays with originally atom

Electron Transfer:
• Transfer high energy electron to another molecule that acts as electron acceptor.
— have electron accepting molecule takes electron and therefore all the energy of the electron.
— Redox Rxns

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8
Q

What is the structure of a chlorophyll?

A

• porphyrin ring absorbs light/photons from sun
- a hydrocarbon component on outside part but has 4 nitrogen inside and magnesium in Center. The N and Mg Center is what captures and absorbs photons
= why plants need N in fertilizer to produce more health green leaves.

— long hydrophobic Hydrocarbon tail anchors pigment in thylakoid membrane

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9
Q

What is a photosystem and what are its components?

Where is it located?

A

• Photosystems: Light-harvesting units located in the thylakoid membrane

• Contains:
1. Several Light-harvesting complexes.
2. One Reaction-center complex

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10
Q

What is a light harvesting complex and what is its function?

A

Light harvesting complexes
Mostly pigments

• Pigment molecule absorbs photon
• Energy transferred from pigment molecule to pigment molecule by resonance transfer
• No electron transfer in antenna complexes

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11
Q

What is an excited electron and what are its potential fates?

A

When light absorbed, electrons in the porphyrin rings are excited:

• electrons moves to higher orbital in a higher energy shell
— Shells further away from nucleus are higher in energy, there electrons further away from nucleus are higher in energy

• Excited state is very unstable
• Lower energy things are = more stable they are
— So electron falls back into lower energy orbital

• 1st law of thermodynamics = energy transferred not created or destroyed
— when electron returns to lower energy state it releases some energy

• If nothing in ground state there to catch energy released 2 things can happen

  1. partially another photon will be released in form of fluorescence = this photon lower in energy than original photon that knocked the electron out of its orbital in the first place.

• chlorophyll is fluorescent = this one way how study chlorophyll molecules by measuring fluorescence of molecules extracted from tissues from leaves, algae etc.

  1. Some energy lost as heat
    - Deals with 2nd law of thermodynamics = everything increases entropy of universe.
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12
Q

What is the reaction -centre complex, what is its function and what are the components?

A

Reaction-Centre Complex
Mostly protein

• Contains 1 Pair of special chlorophyll a molecules = accept energy from light-harvesting complexes

• The energy being transferred by pigment molecules of antenna complexes knocks the electrons of chlorophyll a pair into a very high orbital = electrons get so excited they get transferred to the rxn Center in form of very high energy electrons.

• chlorophyll a molecule losing electrons = oxidized
• Rxn Center complex gains electrons = reduced (charge gets reduced even tho gain electrons)

• Primary electron acceptor (rxn centre complex) accepts excited electrons from the chlorophyll a pair

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13
Q

What are the differences between PSII and PSI?

A

• Both in Thylakoid membrane
• Different composition of reaction centre complexes

Photosystem 2 (PSII)
Acts In ( first )photosynthesis
Absorbs light best at: 680 nm
Chlorophyll a pair called: P680
- P680 transfers high energy electron to primary electron acceptor (rxn centre)

Photosystem 1 (PSI)
Acts In ( second )photosynthesis
Absorbs light best at: 700 nm
Chlorophyll a pair called: P700

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14
Q

What is the location of the linear electron flow?

A

luminal face of photosystem II (PS II).

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15
Q

How would you describe the electron hole?

A

P680 chlorophyll has an electron ‘hole that must be filled by an electron donor. (After it transfers it’s electron to rxn centre)
- b/c chlorophyll lost e^- it’s very unstable = very reactive = steal e^-

Electron donor is water
• O, is released (1 0, per 2 H,O)
• H+ is released into thylakoid space and contributes to proton gradient

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16
Q

What is the function of the oxygen-evolving complex and where is it located?

A

oxygen-evolving complex (OEC) in Photosystem II (PSII) of oxygenic photosynthesis catalyzes the oxidation of water into dioxygen, protons and electrons.

17
Q

Why is oxygen considered a waste-product of photosynthesis?

A

Some of the oxygen produced in the process of photosynthesis is used in respiration by the leaf cells

but the major portion of it is not required and it diffuses out into the atmosphere through the stomata.

Therefore, it may be called a waste product of photosynthesis.

18
Q

What is the ETC and what is its function?

A

Excited electrons move from the primary electron acceptor of PSI through an electron transport chain.

• In thylakoid membrane
• Electron charges move through protein complexes = electric current = high energy to low

= Electrons moving down the ETC release energy
• Exergonic process
• This electric current is used to power a proton pump and other various types of work

19
Q

What is an example of a redox reaction in the ETC?

A

1 electron acceptor (PSII)
- loses e
|
V
Plastoquinone (Pq)
- gains e then loses
|
V
Cytochrome complex (cyt)
- gains e then loses
|
V
Plastocyanin - (Pc)
- gains e then loses
|
V
P700 in PSI

20
Q

Which of the components of the ETC act as a proton pump and which one is the final electron acceptor?

A

Proton pump plastquinone = peripheral mem protein inside thylakoid lumen

• binds to protons outside thylakoid (stroma) = photosystem 2

• Then moves to cytochrome complex = releases protons on inside of membrane

• purpose of this part is to get H ion transported to build up proton gradient over thylakoid membrane (thylakoid lumen).

21
Q

What is the function of PSI?

A

Chlorophyll a molecules in light-harvesting complexes of PSI absorb energy from photons of light = energy transferred to chlorophyll molecules to chlorophyll molecules through resonance transfer.

• Transfer their energy to the P700 pair by resonance transfer; transfers its high energy electron to the primary electron acceptor
- P700 oxidized
- Primary acceptor reduced

• P700 now has an electron hole that must be filled

• The low-energy electron released from the bottom of the ETC (Pc) fills the electron hole in P700

22
Q

What is the final electron acceptor for PSI?

A

The final electron acceptor is NADP

— NADP+ reductase enzyme transfers
2 electrons from ferredoxin to NADP+
— Reduces NADP+ to NADPH in the stroma
— cytochrome complex and ETC ≠ produce ATP
— energy harvested in PSII built up potential energy in form of proton gradient.
— ETC pumps protons which can later be used to produce ATP

23
Q

Which electron shuttle molecule is produced after PSI (where do the electrons end up)?

What is chemiosmosis?

How does it synthesize ATP?

A

Low energy form —> high energy form

NADP+ + 2e- + 2H+ —> NADPH + H+
Oxidized form Reduced form

Chemiosmosis: Use of the potential energy from the proton (H+) gradient to drive the synthesis of ATP

Afterwards,

• H+ released into the stroma can be: m Added to NADP+ to make NADPH
• Actively transported back into the thylakoid space

24
Q

Where are the protons located (concentrated)? In the stroma, intermembrane space, thylakoid space?

A

Concentration gradient of protons built up over the thylakoid membrane by linear electron flow

  • High [H*] in thylakoid space a
  • Low [H* in stroma
25
Q

What is the force powering the ATPsynthase?

A

Protons diffuse out of the thylakoid into the stroma through ATP synthase

• Released energy through facilitated diffusion causes ATP synthase to rotate in a way that allows it to create ATP out of ADP and Pi.

• It’s the movement that provides the required energy for the highly endergonic process of phosphorylating ADP to ATP

26
Q

Why is this process called photophosphorylation?

A

b/c the energy originally came from light

27
Q

What is the cyclic electron flow and what is its function?

A

• Linear electron flow creates equal amounts of ATP and NADPH

• Calvin cycle uses more ATP than NAPDH
-> Creates an imbalance
— 6 ATP & NADPH in first half to produce G3P
— but in second half 3 ATP used to produce RuBP

• Cyclic flow allows cell to make extra ATP without making more NADPH

Use is controlled by ATP and NADPH levels in the chloroplast

28
Q

Which components are involved in the cyclic electron flow and what does it produce?

A

• Uses only PSI

• Makes ATP but NO NADPH or O2

  1. Electrons in P700 are excited and transferred to PSI primary electron acceptor
  2. High energy electrons move to ferredoxin
  3. Electrons move backwards to the (transfer to plastoquinone in) cytochrome
    — Protons are pumped and ATP is produced by chemiosmosis
  4. Electrons move to Pc, and then back to P700 to fill the electron hole
29
Q

What is the function of the Calvin cycle and where is it located?

A

• CO2 and water is used to build sugars more specifically G3P
— ATP, NADPH goes in, ADP, NADP+ out

• in the stroma

• An anabolic and endergonic process
• Products (sugar) have more energy than reactants (CO,)
• ATP and NADPH from light reactions provide the energy needed to make the sugar

30
Q

What are the products of the Calvin cycle?

A

The carbohydrate produced is glyceraldehyde-3-phosphate (G3P):
— 3 carbon sugar
— phosphate = being phosphorylated contributes to high energy
— a High energy
— Need 3 molecules of CO, to be fixed to make 1 G3P (3 turns of the cycle)

31
Q

What are the different phases of the Calvin cycle and what is their function?

A

Phase 1: carbon fixation process
— CO2, is reduced to form complex carbohydrates

Phase 2: reduction
— Carbon reduced = higher energy molecule formed
— requires ATP and NADPH
— Reduction of CO2 to sugars (PGA) is indirectly coupled to coupled to oxidation of water
— But Is directly coupled to oxidation of NADPH
— ATP provides energy for endergonic process

Phase 3: regeneration
— 5 G3P + 3 ATP —> 3 RuBP
— 3 RuBP used in next cycle to fix more CO2

Overall formula for 3 turns of the cycle:
• 3 CO2 + 9 ATP + 6 NADPH -› 1 G3P

32
Q

What is/are the function(s) of RUBISCO? Why is it not very effective?

A

RUBISCO
— Ribulose Bisphosphate Carboxylase-
Oxygenase

— Enzyme that fixes CO2

— RuBP = Ribulose bisphosphate (5C sugar)

• not effective because doesn’t have great affinity for CO2.

3 CO2 + 3 RuBP —RUBISCO—> 6 3-phosphoglycerate

33
Q

What is the role of ATP and NADPH in the Calvin Cycle?

Which one is the reducing agent?

A

• Role of ATP: Phosphates added to reactants provide energy to drive reactions.
— ATP phoshorylates 3-PGA = 1,3-bisphosphoglycerate

• Role of NADPH: Each molecule donates 2 high energy electrons for reduction of reactants.
— reduction of 3-PGA coupled with oxidation of NADPH = Gluceraldehyde-3-phosphate (G3P), NADP+, pi

Reducing agent is NADPH

34
Q

What are the substrates and products of the three phases in the Calvin cycle?

A

Phase 1-
Substrates: RuBP, CO2
Products: 3-phosphoglycerate (PGA)

Phase 2-
Substrates: 3-PGA, (ATP & NADPH?)
Products: 6 G3P, ADP, NADP+

Phase 3-
Substrates: 5 G3P
Products: RuBP

35
Q

Why is regeneration an important part of the Calvin Cycle?

A

So that the cycle can continue.

If the process stops, the cycle will not be able to restart and the production of G3P which makes glucose, will stop.

36
Q

What molecules can be produced from G3P?
What is their function?

A

In Cytosol: Can be used to make:
• Sugars such as glucose or sucrose
• Fuel for cellular respiration
• Building blocks for other molecules

In Chloroplast: Can be used to make:
• Energy storage compounds, like starch

Can be used to make:
• Cell wall constituents, like cellulose