water, molecular interactions, and acid-base chemistry Flashcards

1
Q

dipolar nature of water

A

hydrogen atoms have localized partial positive charges and the oxygen atom has a partial negative charge

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2
Q

what is the structure of water

A

tetrahedral arrangement of electron pairs and hydrogen atoms around oxygen atom

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3
Q

hydrogen bonds

A

longer and weaker than covalent O-H bond

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4
Q

what is a hydrogen bond defined by?

A

defined by distance between acceptor and donor

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5
Q

how many hydrogen bonds are possible per water molecule?

A

four hydrogen bonds; where in liquid water average 3.4 H bonds and ice all 4 H bonds

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6
Q

why does ice have all 4 H bonds?

A

allows it to be more opened up, resulting in its density being less than liquid water

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7
Q

what is important for clathrate-like structures?

A

entropy effect

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8
Q

what is the lifetime of a hydrogen bond?

A

1-20 ps (10^-12 s); liquid water can be described as a “flickering structure”

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9
Q

hydrogen bond donors

A

N-H, O-H (not C-H)

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10
Q

hydrogen bond acceptors

A

N: and O:

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11
Q

what differentiates a functional folded protein from a precipitated protein?

A

only 10 kJ/mol

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12
Q

what is a factor for the strength of a hydrogen bond?

A

stronger when 3 atoms involved like in a line

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13
Q

amphipathic

A

both hydrophilic and hydrophobic

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14
Q

what are some of the characteristics of long-chain fatty acids?

A

very hydrophobic alkyl chains surrounded by a layer of highly ordered water molecules

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15
Q

what stabilizes the micelle?

A

energy gained by freeing immobilized water molecules

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16
Q

the water concentration is combined with the equilibrium constant forms what?

A

acid dissociation constant, Ka

17
Q

what is a buffer?

A

consist of an aqueous solution of a weak acid and its conjugate base

18
Q

what is the henderson-hasselbalch?

A

pH= pKa+ log[A-]/[HA]

19
Q

pepsin

A

digestive enzyme secreted into gastric juice, which has pH of approx. 1.5

20
Q

trypsin

A

digestive enzyme that acts in the small intenstine and has a pH optimum that matches the neutral pH in the lumen of the small intestine

21
Q

alkaline phosphatase of bone tissue

A

hydrolytic enzyme thought to aid in bone mineralization