Viruses Flashcards
HIV family
retroviridae
HIV structure
ss(+)RNA, enveloped, truncated conical capsid
HIV entry
viral gp120 protein binds to target CD4 and co-receptors CCR5 (macrophages) and CXCR4 (T-cells)
viral gp41 transmembrane protein for membrane fusion
HIV replication
viral reverse transcriptase (RNA dependent DNA polymerase) viral integrase (viral DNA integration into host DNA)
HIV assembly/egress
translation makes proteins, viral protease cleaves viral polyprotein
HIV genes
env gene- gp120 and gp41
gag gene- capsid protein and matrix protein
pol gene- RT, protease, integrase
HIV transmission
sexual contact, bloodborne, vertical (maternal-infant)
HIV clinical course
acute retroviral syndrome (flu-like), then asymptomatic
stages 1-3 depending on CD4+ T-cell counts (<200 is stage 3/AIDS)
HIV tip offs
fatigue, wt loss, lymphadenopathy, low grade fever, homosexual male, IV drug user, sexually active adult, decreased CD4 count, opportuinstic infections
AIDS prophylaxis
CD4 <200 = start pneumocystitis pneumonia (PCP) prophylaxis with TMP-SMX
CD4 <100 = start toxoplasmosis prophylaxis with TMP-SMX
CD4 <50 = start mycobacterium avlum complex (MAC) prophylaxis with azithromycin or clarithromycin
HIV testing
antigen/antibody tests: p24 AND anti HIV-1/HIV-2 IgM and IgG
CD4+ counts assess progression
10-33 day window period before HIV can be detected
HIV treatment
treat everyone with HIV; need continued treatment!!
nucleoside reverse transcriptase inhibitors (NRTIs)- binds reverse transcriptase at normal site of nucleoside
non-nucleoside reverse transcriptase inhibitors (NNRTIs)- binds reverse transcriptase elsewhere
integrase inhibitors (—tegravir)
protease inhibitors (–navir)
fusion inhibitors
HIV vaccines
none
HSV-1/2 family
herpesviridae
HSV-1/2 structure
dsDNA, enveloped, icosahedral
HSV-1/2 entry
tegument proteins unique to herpesviruses
HSV-1/2 replication
latency- alphaherpesvirus subfamily = neurotrophic
thymidine kinase- helps with early viral DNA replication by turning nucleosides into nucleotides by adding a phosphate group
HSV-1/2 assembly/egress
virus envelope comes from nuclear membrane
HSV-1/2 biology notes
reactivation from latency can occur by UV radiation, hyperthermia, stress and IMMUNOSUPPRESSION
T cell response is critical to control
HSV-1/2 epidemiology
most common cause of viral encephalitis
HSV-1/2 transmission
close personal contact (kissing, sexual contact), vertical
HSV-1/2 clinical course
HSV-1- cold sores, latent in trigeminal ganglion
HSV-2- painful genital vesicles, fever, malise, latent in sacral nerve ganglia
both- can cause encephalitits with focal temporal lesions, as well as severe neonatal herpes
HSV-1/2 testing
clinical diagnosis of characteristic lesions
encephalitis- CSF PCR
genital/skin lesions- PCR or immunoflourescence staining - Tzanck smear of vesicles, look for Cowdry inclusions
HSV-1/2 treatment
acyclovir (guanosine analog)- viral thymidine kinase converts acyclovir into a false nucleotide to block DNA synthesis by DNA polymerase
HSV-1/2 vaccine
none
varicella zoster virus (VZV) family
herpesviridae –> HHV-3
varicella zoster virus (VZV) structure
dsDNA, enveloped, icosahedral
varicella zoster virus (VZV) entry
tegument proteins unique to herpesviruses
varicella zoster virus (VZV) replication
latency- alphaherpesvirus subfamily = neurotropic
latent in dorsal root ganglion
thymidine kinase
varicella zoster virus (VZV) assembly/egress
virus envelope from nuclear membrane
varicella zoster virus (VZV) transmission
respiratory droplets from patient with chickenpox (very contagious)
contact with lesions from patients with shingles (not particularly contagious)
varicella zoster virus (VZV) clinical course
congenital varicella
chicken pox (primary infection)- asynchronous vesicular rash (lesions in different stages), fever, pharyngitis, malise, rhinitis, Raye syndrome
shingles- reactivation of latent VZV, pain/vesicles in dermatomal distribution, Ramsay hunt syndrome, herpes zoster ophthamicus
can cause severe disease in immunocompromised- pneumonia
varicella zoster virus (VZV) testing
PCR
old school = Tzanck smear of vesicle, look for Cowdry inclusions
varicella zoster virus (VZV) treatment
acyclovir (guanosine analog)- resistance if viral TK acquires mutation
varicella zoster virus (VZV) vaccines
live attenuated vaccine for all children
new inactivated VZV vaccine
cytomegalovirus (CMV) family
herpesviridae –> HHV-5
cytomegalovirus (CMV) structure
dsDNA, enveloped, icosahedral
cytomegalovirus (CMV) entry
receptor cellular integrins (heparan sulfate)
cytomegalovirus (CMV) replication
latency- betaherpesvirus subfamily = lymphotropic
thymidine kinase
cytomegalovirus (CMV) assembly/egress
virus envelope from nuclear membrane
cytomegalovirus (CMV) biology notes
infected cells have “owl eye” inclusions
latency in mononuclear cells
cytomegalovirus (CMV) transmission
saliva, sexual, blood products, vertical
cytomegalovirus (CMV) clinical course
- mononucleosis (monospot negative)
- most common cause of congenital infection- most asymptomatic, severe with jaundice, thrombocytic purpura (blueberry muffin), pneumonitis, CNS damage
- immunocompromised/AIDS/transplant pt- CMV retinitis, interstitial pneumonitis, GI disease/esophagitis/colitis
cytomegalovirus (CMV) testing
PCR of blood, test urine in babies only
**screen blood and organ donors for CMV infection
cytomegalovirus (CMV) treatment
gancyclovir (guanosine analog)- used only for CMV and not HSV-1/2
cidofovir and foscarnet (viral DNA polymerase inhibitors)
cytomegalovirus (CMV) vaccine
none
human herpesvirus 6/7 (HHV 6/7) family
herpesviridae
human herpesvirus 6/7 (HHV 6/7) structure
dsDNA, enveloped, icosahedral
human herpesvirus 6/7 (HHV 6/7) entry
tegument proteins unique to herpesviruses
human herpesvirus 6/7 (HHV 6/7) replication
latency- betaherpesvirus subfamily = lymphotropic, latency in mononuclear cells
HHV 6 infects CD4+ T-helper cells
human herpesvirus 6/7 (HHV 6/7) assembly/egress
virus envelope form nuclear membrane
human herpesvirus 6/7 (HHV 6/7) transmission
respiratory droplets
human herpesvirus 6/7 (HHV 6/7) epidemiology
human reservoir
human herpesvirus 6/7 (HHV 6/7) clinical course
roseola- fever for 5 days, fever resolves followed by lacy body rash that spares the face –> caused commonly by HHV 6 (7 is less common)
high fever can cause seizures
one of the 5 classic childhood exanthems
human herpesvirus 6/7 (HHV 6/7) testing
clinical
human herpesvirus 6/7 (HHV 6/7) treatment
supportive
human herpesvirus 6/7 (HHV 6/7) vaccine
none
epstein-barr virus (EBV) family
herpesviridae –> HHV-4
epstein-barr virus (EBV) structure
dsDNA, enveloped, icosahedral
epstein-barr virus (EBV) entry
binds receptor CD21 (complement receptor 2)
epstein-barr virus (EBV) replication
latency- gammaherpesvirus subfamily = oncogenic
latent in B cells
epstein-barr virus (EBV) assembly/egress
virus envelope from nuclear membrane
epstein-barr virus (EBV) epidemiology
reservoir in humans
epstein-barr virus (EBV) transmission
respiratory secretions, saliva
epstein-barr virus (EBV) clinical course
mononucleosis (heterophile positive)- fatigue, fever, sore throat, lymphadenopathy, splenomegaly
lymphoproliferative disease in immunocompromised and cancer patients
lymphoma, nasopharyngeal carcinoma
Downey type 2 atypical lymphocytes up to 70% in blood
epstein-barr virus (EBV) testing
heterophile antibodies positive
PCR of blood
epstein-barr virus (EBV) treatment
supportive
epstein-barr virus (EBV) vaccines
none
HHV-8 family
herpesviridae –> kaposi sarcoma-associated herpesvirus
HHV-8 structure
dsDNA, enveloped, icosahedral
HHV-8 replication
latency- gammaherpesvirus subfamily = oncogenic
latency in B cells and glandular epithelial cells
HHV-8 assembly/egress
virus envelope from nuclear membrane
HHV-8 biology notes
gene turns on vascular endothelial growth factor (VEGF) –> leads to kaposi sarcoma
HHV-8 epidemiology
reservoir in humans
HHV-8 transmission
sexual contact, saliva, vertical, transplantation
HHV-8 clinical course
kaposi sarcoma- neoplasm of endothelial cells
seen in HIV/AIDS and transplant patients
dark plaques/nodules on skin
can affect GI tract and lungs
classic kaposi sarcoma- seen in elderly men, most often affects skin of the extremities
HHV-8 testing
antibody tests, PCR
HHV-8 treatment
no drugs, surgical, try to correct immunosuppression
HHV-8 vaccines
none
molluscum contagiosum family
poxiviridae
molluscum contagiosum strucure
dsDNA, enveloped, complex morphology, HUGE
molluscum contagiosum replication
replicates in the cytoplasm
molluscum contagiosum assembly/egress
makes its own envelope
molluscum contagiosum epidemiology
reservoir in humans
molluscum contagiosum transmission
direct contact, fomites
molluscum contagiosum clinical course
flesh colored papule with central umbilication
molluscum contagiosum testing
eosinophillic cytoplasmic inclusion bodies on biopsy
molluscum contagiosum treatment
supportive, disease is usually self-limited
treat underlying HIV
cimetidine as immune stimulant in children (histamine receptor antagonist–> stimulates delayed type hypersensitivity immunologic reaction)
molluscum contagiosum vaccines
none
variola (smallpox) family
poxviridae
variola (smallpox) structure
dsDNA, enveloped, complex morphology, HUGE
variola (smallpox) replication
replicates in the cytoplasm
variola (smallpox) epidemiology
eradicated using vaccine
variola (smallpox) transmission
respiratory transmission
variola (smallpox) clinical course
flu-like prodome followed by vesicular rash, mouth to extremities, can cover whole body in a day
synchronous rash- all vesicles are in the same stage (unlike chicken pox)
variola (smallpox) treatment
supportive
variola (smallpox) vaccine
live attenuated vaccine –> causes serious complications for immunocompromised patients and is not safe for pregnant women
human papilloma virus (HPV) family
papillomavirus
human papilloma virus (HPV) structure
dsDNA, naked, icosahedral
human papilloma virus (HPV) replication
replicates in the nucleus like all DNA viruses except pox
human papilloma virus (HPV) assembly/egress
infects basal layer of the skin/mucus membranes (has tropism)
malignacyl viral proteins E6 and E7 inhibit tumor suppressor genes p53 and Rb (respectively)
human papilloma virus (HPV) epidemiology
reservoir in human
human papilloma virus (HPV) transmission
direct contact, fomites
human papilloma virus (HPV) clinical course
cutaneous warts mostly on hands (serotype 2&4) plantar warts on soles of feet, deep and painful (serotype 1) anogenital warts (condyloma acuminata) (serotype 6&11) anal, vaginal, vulvar, penile and laryngeal cancer
human papilloma virus (HPV) testing
koilocytic cells in pap smear, PCR
human papilloma virus (HPV) treatment
cidofovir (antiviral), surgical, chemical, immune
human papilloma virus (HPV) vaccine
cancer vaccine, gardasil (inactivated subunit vaccine)
safe sex is important for protection
parvovirus B19 family
parvoviridae
parvovirus B19 structure
ssDNA (**only ssDNA virus), naked, icosahedral
parvovirus B19 entry
receptor is the P antigen on RBCs
parvovirus B19 replication
replicates in nucleus like all DNA viruses except pox
parvovirus B19 assembly/egress
infects immature erythroid progenitor cells causing lysis
can cause aplastic crisis in pts with sickle cells
parvovirus B19 epidemiology
human respiratory tract
parvovirus B19 transmission
respiratory, fomites, vertical
parvovirus B19 clinical course
childhood exanthem- flu-like symptoms followed by raised, indurated facial rash
arthralgias in adults
myocarditis in adults and children
fetus with severe anemia, heart failure, hydrops fetalis, spontaneous abortion
parvovirus B19 testing
antibody testing, PCR
parvovirus B19 treatment
supportive
parvovirus B19 vaccine
none
yellow fever virus family
flaviviridae
yellow fever virus strucutre
ss(+)RNA, enveloped, icosahedral
yellow fever virus replication
cytoplasmic, genome closely matches mRNA
yellow fever virus epidemiology
arthropod borne (arbovirus) mosquito vector, human and monkey reservoir
yellow fever virus transmission
mosquito bite
yellow fever virus clinical course
high fever, back pain, black vomitus, bloody stools, GI, liver, kidney and heart damage
jaundice
yellow fever virus testing
councilman bodies on liver biopsy (represents hepatocytes undergoing apoptosis)
yellow fever virus treatment
supportive
yellow fever virus vaccine
live attenuated vaccine
vector control is important in disease control
dengue virus family
flavivirus
dengue virus structure
ss(+)RNA, enveloped, icosahedral
dengue virus replication
cytoplasmic, genome closely matches mRNA
infects WBCs
dengue virus epidemiology
arthropod borne (arbovirus), mosquito vector, human and monkey reservoir
dengue virus transmission
mosquito bite
dengue virus clinical course
breakbone fever- rash, muscle and joint pain, retro-orbital headache, high fever
dengue hemorrhagic shock
thrombocytopenia and leukopenia on CBC
dengue virus treatment
supportive
dengue virus vaccine
limited usefulness, can make dengue fever worse in naive patients
dengue virus control notes
**antibody dependent enhancement –> once you get it once it gets worse the second time you get it
zika virus family
flaviviridae
zika virus structure
ss(+)RNA, enveloped, icosahedral
zika virus replication
cytoplasmic, genome closely matches mRNA
zika virus epidemiology
arthropod borne (arbovirus), mosquito vector, vertebrate reservoir
zika virus transmission
mosquito, sexual, vertical
zika virus clinical course
febrile illness with itchy rash and arthralgia, joint pain, conjunctivitis
usually mild and in most people asymptomatic
congenital- microcephaly, fetal demise
zika virus testing
PCR detection of viral RNA, antibody test
zika virus treatment
supportive
zika virus vaccine
none, vector control is important in disease control
rubella virus family
togaviridae
rubella virus structure
ss(+)RNA, enveloped, icosahedral
rubella virus replication
cytoplasmic replication
rubella virus epidemiology
respiratory droplets, human reservoir
rubella virus transmission
respiratory, vertical
rubella virus clinical course
german measles (class childhood exanthem) erythematous rash starts on face, proceeds to trunk, does not coalesce (vs measles) postauricular and occipital lymphadenopathy congenital rubella syndrome- fetus with cataracts, heart defects, developmental delay, hearing loss
rubella virus testing
antibody testing
screen all pregnant women for rubella immunity
rubella virus treatment
supportive
rubella virus vacine
live attenuated MMR vaccine- do give it to children, do NOT give it to pregnant women or immunocompromised
measles virus family
paramyxoviridae, also called rubeola virus
measles virus structure
ss(-)RNA, non-segmented, enveloped, helical
measles virus entry
fusion proteins appear as spikes on virus surface (F proteins)
measles virus replication
cytoplasmic replication
(-) RNA so needs a viral RNA dependent RNA polymerase protein that is viron associated
measles virus assembly/egress
buds from cell membrane
measles virus biology notes
causes cell-cell fusion to make giant cells
can escape immune detection
hemaglutinin is a virulence factor (clumps RBCs)
measles virus epidemiology
human reservoir
measles virus transmission
respiratory droplets
measles virus clinical course
4 C’s- cough, coryza, conjunctivitis, koplik spots on buccal mucosa
classic childhood exanthem of erythematous rash that starts on the head and progresses downward; rash can become confluent (unlike rubella)
complications- pneumonia, encephalitis, acute disseminated encephalomyelitis, subacute sclerosing panencephalitis
measles virus testing
antibody testing
measles virus treatment
supportive, vitamin A
measles virus vaccine
live attenuated MMR
mumps virus family
paramyxoviridae
mumps virus structure
ss(-)RNA, non-segmented, enveloped, helical, filamentous morphology
mumps virus entry
fusion proteins appear as spikes on virus surface (F proteins) –> F proteins cause cell-cell fusion to make giant cells
mumps virus replication
cytoplasmic replication
(-) RNA so needs a viral RNA dependent RNA polymerase protein that is virion associated
mumps virus assembly/egress
buds from cell membrane
mumps virus biology notes
can escape immune detection
hemagglutinin is a virulence factor (clumps RBCs)
neuraminidase is a virulence factor (allows for viral release from host cell)
mumps virus epidemiology
respiratory droplets, human reservoir
mumps virus transmission
respiratory
mumps virus clinical course
mumps- bilateral parotitis with fever, headache, malise
complications include orchitis (testicular inflammation), pancreatitis and meningioencephalitis
can cause sterility, especially if contracted after puberty