virus classification structure and replication Flashcards

1
Q

theories of virus origin

A

cellular - viruses were once a cellular component

autopoeitic - viruses were once autopoeitic but became dep upon cells to replicate

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2
Q

viruses can be classified based on

A
virus particle structure
genome
replication features
serology
stability
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3
Q

a virus’s nucleocapsid is composed of

A

DNA/RNA core

protective capsid coating made of proteins

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4
Q

what’s a capsomere

A

repeating protein subunit of a capsid

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5
Q

some viruses acquire an _____ upon exiting the host. this can be dissolved using a _________

A

envelope

lipid solvent

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6
Q

how can bacterial genome be arranged?

A

single / double stranded and RNA or DNA

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7
Q

what’s the difference btween plus sense ssRNA, minus sense ss RNA and ambisense?

A
plus = can be used directly for prot translation
minus = the antithesis of what's needed for prot translation
ambisense = can code for different proteins depending on direction it's being read
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8
Q

what do DNA viruses need that RNA viruses don’t?

A

access to the nucleus

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9
Q

what do RNA viruses need that DNA viruses don’t?

A

RNA dep. RNA transcriptase,

-ssRNA and dsRNA must bring their own polymerase into the cell (+ssRNA can act as mRNA)

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10
Q

traits of viral receptors

A
  1. usually don’t mimic cell receptor’s normal ligands (binds to diff spots)
  2. typically are spike lke projections on particle surface
  3. may need a co-receptor
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11
Q

how can we change receptor recognition?

A

genetic engineering (integrin RGD sequence or pseudotyping particles)

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12
Q

pathways for viral entry

A
  • endocytosis or direct penetration (pores or membrane disruption)
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13
Q

all viruses excpet ______ have to leave the nucleocapsid to be replicated

A

dsRNA

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14
Q

all viruses need cells _____ to produce proteins w/ no exceptions.

A

ribosomes

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15
Q

what’s the fate of stuctural vs. non-structural proteins?

A

structural go into the capsid

non-structural are only in the infected cell

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16
Q

how does replication work in a +ssRNA?

A

genome serves as template for translation

polymerase mades -ssRNA copy as template for new genomes

17
Q

how does replication work for a -ssRNA?

A

virus particle must include viral polymerase
polymerase makes mRNA
genome replicates through full length +ssRNA intermediate

18
Q

how does replication work for a dsRNA

A

virus particle includes viral polymerase
dsRNA induces innate immune response so it stays w/in the capsid
mRNA is syth. in the particle and exported to cytoplasm
mRNA serves as + strand in virus genome and -strand is synth from it during assembly

19
Q

how does replication work for ssDNA and dsDNA?

A

most must gain access to nucleus (pox = exception)
prep cell for DNA replication (some need cell to be in active replication)
ensure genome ends are copied

20
Q

different mechanisms of virus assembly

A

adenovirus - empty protein coat imports genome
reovirus - RNA packaged during capsid assembly
retrovirus - preassembly on a membrane

21
Q

traits of virus replication kinetics

A

one step growth curve where every cell’s infected at the same time and every cell dies at the end of the infection (timed from start of infection to the beginning of the plateau

22
Q

phases of virus replication kinetics

A

eclipse - attachment and uptake
exponential growth - replication and assembly
plateau - cell death

23
Q

one step growth curves are good to assess

A

mutations, cell entry and process design

24
Q

what is serology

A

antibody based viral detection

25
Q

different assays used for virus detection

A

cytopathic effect - cell rounding, syncytia formation (cells fuse together), inclusion bodies (cells look like bricks)
fluorescent focus assays - infect cells and stain virus antigens with fluorescent antibodies
plaque assay - inoculate a cell monolayer w/ a dilute virus that will kill cells leaving clear areas.
infectious dose - inoculate either tissue cultures, eggs or animals with different dilutions of virus and see effects.
particle assays - either seen w/electron microscopy or bind w/ blood in hemagglutinin assay (red spots means not enough virus to stop blood from clumping)
genome assay - polymerase chain rxn or DNA/RNA blots
serological assays - antibody binding