Virology Test 2 Flashcards
What is the purpose of PCR?
Amplification of viral genome/DNA
What are the 3 steps of PCR?
Denaturation
Annealing
Extension/elongation
What are real-time PCR or quantitative PCR (qPCR)?
Advanced form of PCR which allows monitoring and quantification of increasing accumulation of PCR products/nucleic acid load as the reaction progresses.
Useful to study virus load in patients
What is DNA sequencing?
Process by which the sequence of bases in a DNA molecule is elucidated/can be obtained and read.
What are advantages to using Next generation sequencing?
Significantly cheaper Quicker Needs less DNA High throughput More accurate and reliable than Sanger sequencing
What is metagenomics?
The study of the collective set of microbial populations in a sample by analyzing the sample’s entire nucleotide sequence content, and is a powerful method for random detection of existing and new pathogens.
What is phylogenetic analysis?
The use of virus genome sequence data to study evolution of viruses and genetic relationships among viruses.
What is the advantage of microarrays in detection of pathogens in surveillance studies is?
Hundreds of pathogens can be screened for simultaneously using a single microarray chip.
What happens in a microarray?
Several thousand of known DNAs (probes), amplified by PCRs/RT-PCRs, are spotted onto a glass or a silicon chip.
The target/sample DNA are fluorescently labeled and then hybridized/added to the chip containing DNA probes.
Positive reactions between probe-DNA and sample DNA (hybridization) generate a fluorscent signal from the spot where probe DNA is spotted in the chip.
The study of virus evolution using genome sequence data is known as ______
Phylogenetics
Antiviral drugs
Class of medication used specifically for treating viral infections.
Interfere with the ability of a virus to infiltrate a target cell or target different stages of replication/synthesis of components required for replication of the virus
Immune system stimulation
Interferons, class of proteins that has antiviral effects and modulate functions of the immune system
What are the 3 ways/purposes of treating viral diseases?
Administer antiviral drugs.
Immune system stimulation.
Synthesize antibodies or administration of natural antiserum (antibodies).
Acyclovir antiviral activity is primarily restricted to________
Herpesviruses
What is Acyclovir as?
A prodrug, inactive form
What does acyclovir require in infected host cells to convert itself into active form and interfere with virus replication?
Virus enzymes
What is Acyclovir used to treat?
Herpesvirus infections in humans
Feline herpesvirus 1 induced corneal ulcers
Equine herpesvirus-1 induced encephalomyelitis
What is Acyclovir?
Synthetic nucleoside analog of deoxyguanosine.
Two main steps of mechanism of antiviral effect of acyclovir
Herpes simplex’s DNA polymerase enzyme incorporates the acyclovir monophosphate into the growing DNA strand as if it were 2-deoxyguanosine monophosphate (a “G” base). Further elongation of the chain in now impossible. Viral DNA chain synthesis stops.
Competitive inhibition of viral DNA polymerase, as acyclovir-triphosphate compete with dGTP for viral DNA polymerase.
Is acyclovir toxic to the uninfected host cell?
No
Why is acyclovir non-toxic to the uninfected host cell?
Since the enzymes herpesvirus thymidine kinase and herpes virus DNA polymerase are viral enzymes and not found in uninfected host cells, acyclovir cannot be phosphorylated and incorporated into the host DNA.
What does amantadine do?
Inhibits replication of most strains of influenza A viruses by blocking uncoating of the virus
What is the antiviral MOA of amantadine?
The M2 ion channel is the target of the antiviral amantadine.
These compounds clog the channel and prevent it from pumping protons into the virion.
In the presence of amantadine, viral RNAs remain bound to M1 and cannot enter the nucleus. Viral replication is inhibited.
Oseltamivir (Tamiflu) is what?
Inhibitor of neuraminidase (NA) enzyme synthesized by influenza A and B viruses.