Virology Flashcards
Seen on the surface of icosahedral virus particles
Capsomeres
The protein shell or coat that encloses the nucleic acid genome
Capsid
A virus particle that is functionally deficient in some aspect of replication
Defective virus
Lipid containing membrane that surrounds some virus particles
Envelope
Virus encoded glycoprotein projections that exposed on the surface of the envelope
Peplomers
Protein nucleic acid complex representing packaged form of the viral genome
Nucleocapsid
Genome with capsid
Nucleocapsid
Structure for penetration or attachment
Spikes
Structural unit
Protomer
Single folded viral polypeptide chain
Subunit
The complete virus particle
Virion
Caused infection with genome alone without capsid
Viriods
Proteinous infection particle
Prions
Proteins that could cause infection
Prions
Treatment for prions
Incineration
Clinical manifestation of prions
Borne-spongy-form encelopathy
Creutzfeldt-Jakob disease
Group 1-2in Baltimore classification
DNA viruses
1-dsDNA virus
2-ssDNA virus
Group 3-5 in Baltimore classification
3-dsRNA virus
4-positive sense ssRNA
5-negative sense ssRNA
Group 6
Reverse transcribing RNA virus
Group 7
Reverse transcribing DNA virus
First step in viral replication
Attachment
Absorption
Adhesion
Poliovirus receptor
Immune globulin superfamily molecules
Rabies virus receptor
Acerylcholine
Influenza virus receptor
Sialic acid
HIV receptor
CD4
Epstein Barr virus receptor
Complement receptor C3d
General characteristic of a virus
Obligate intracellular parasite
Second step in viral replication
Penetration or engulfment
Three ways for releasing genetic material to cell
- endocytosis
- naked virions can directly penetrate the cell membrane
- fusion of the virion envelope with the plasma membrane
Physical separation of the viral nucleic acid from the outer structural components of the virion so that it can function
Uncoating
RNA virus releases their genome into the
Cytoplasm
DNA viruses release their genome into the
Host nucleus
Stage in viral replication wherein the. Umber of genetic material inside the cell increases
Replication
Formation of protein content.
Synthesis
When do we collect specimen? Why?
ASAP because viral shedding is usually greatest during the early stages of infection
Preferred manner of specimen collection
Aspiration
Preferred swab to be used
Dacron or rayons
This swabs inhibit the replication of some viruses
Calcium alginate
tissue samples must be kept?
Moist
These are added to sterile containers to keep tissues from drying out
Viral transport medium
Saline
TSB
Transport media are consist of
Buffered isotonic solution with some type of protein
Samples that can be collected with viral transport media are
Respiratory
Swab
Tissue samples
Samples that should be collected without viral transport media
Blood Bone marrow CSF Amniotic fluid Urine Pericardial and pleural fluid
If specimens cannot be processed immediately store at this temperature
4C
Specimen is frozen and held at
-70C
Specimen should not be stored at this temperature because it facilitates the formation of ice crystals
-20C
Four methods to diagnose viral infection
Direct detection
Nucleic acid based detection
Isolation of viruses in cell cultures
Serologic assay
Characteristic visual changes in infected cells produced by viruses
Cytopathic effect CPE
Can Detect Cowdry type A bodies from herpes simplex virus
Tzanck smear
Can reveal HPV associated koilocytosis squamous cells with an enlarged nucleus surrounded by nonstaining halo
Papanicolaou smear (pap)
Rabies is diagnosed by detecting
Negri bodies
Example of nucleic acid based detection
Polymerase chain reaction
PCR
Gold standard
Viral isolation
To indicate culture of cells in vitro.
Not organized into a tissue
Cell cultures
Used to denote growth of tissues or an organ in a way that preserves the architecture or function of tissue or organ
Tissue or organ culture
Obtained from tissue removed from an animal
Primary cell culture
Examples of primary cell cultures
Human embryonic kidney HEK Rabbit kidney RK Primary monkey kidney PMK Rhesus monkey kidney RMK Cytomolgus monkey kidney CMK African green monkey kidney AGMK
Subcultured primary cell culture >75% of cells have the same karyotype as normal cell
Diploid cell line
Example of diploid cell line
Human embryonic lung with 38 MRC-From
Human diploid fibroblast
Heteroploid or immortal cell lines <75% of cells have the same karyotyoe of the normal cell lines
Continuous cell line
Example of continuous cell line
Human cervical carcinoma Carcinoma of the human larynx Nasopharyngeal carcinoma Human lung carcinoma AGMK