Unit 18- mutations Flashcards

1
Q

mutations

A

inherited alterations in the DNA seq
- source of genetic variation
- source of many diseases and disorders

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

adaptive mutation

A
  • genetic variation critical for evolutionary change that brings about adaptation to new environments
  • stressful conditions, where adaptation might be necessary to survive, induce increased mutation in bacteria
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

causes of mutations

A
  • spontaneous replication error
  • spontaneous chem changes
  • chemically induced mutations
  • radiation
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Big categories of mutations

A
  • somatic mutations (all cells derived from that cell with have the mutation)(mitosis)
  • germ-line mutations (offspring that came from mutant cell will be completely mutated)(meiosis)
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

base substitution: transition

A

the substitution of a purine for a purine or of a pyrimidine for a pyrimidine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

base substitution: transversion

A

substitution of a pyrimidine for a purine or of a purine for a pyrimidine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

insertions and deletions: frameshift

A

affects the reading frame

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

insertions and deletions: in-frame

A

does not affect the reading frame

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

expanding nucleotide repeats

A

increase the number of copies of a set of nucleotides (fragile sites)(hairpins. 2/3 bases pairing)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

forward mutation

A

wild type —> mutant type

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

reverse mutation

A

mutant type —> wild type

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

missense mutation

A

amino acid —> diff amino acid

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

nonsense mutation

A

sense codon —> stop codon

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

synonymous mutation

A

change the base but don’t change amino acid

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

silent mutation

A

codon —> synonymous codon (no change in AA seq!)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

neutral mutation

A

no change in function

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

phenotypic effects of mutations

A
  • loss-of-function mutation
  • Gain-of-function mutation
  • Lethal mutation
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

Suppressor mutation

A

a mutation that hides or suppresses the effect of another mutation
- Intragenic (second mutation at diff site in SAME GENE hides mutation in another site)
- Intergenic (mutation in second gene that hides mutation in first gene)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

Factors Affecting Mutation Rates

A
  • Frequency of a change in DNA
  • probability that when a change takes place, that it will be repaired
  • probability that a mutation will be detected
20
Q

strand slippage

A

strand loops out when pairing lots of identical pairs, creating an additional nucleotide if new strand or removal of a nucleotide if template strand

21
Q

unequal crossing over

A

causes crossing over and deletions in the same event

22
Q

radiation

A

greatly increases mutation rates in all organisms

23
Q

thymine dimer

A

two thymine bases dimerized (covalently bonded) and block replication

24
Q

SOS system in bacteria

A

allows bacterial cells to bypass the replication block with a mutation prone pathway

25
Ames Test
used to identify chem mutagens - place mutant bacteria in min medium = no bacteria (control) - mutant bacteria mixed with chem for mutagenic activity. Placed on min medium = lots of bacteria (his- mutant ---> his+ wild type) The chem was mutagenic as it changed the bacteria
26
repair pathways
- mismatch repair - direct repair - base-excision repair - nucleotide-excision repair
27
mismatch repair
- Mismatched bases and other DNA lesions are corrected by mismatch repair. - Enzymes cut out a section of the newly synthesized strand of DNA and replace it with new nucleotides.
28
direct repair
restores the correct structures of altered nucleotides
29
base-excision repair
glycosylase enzymes recognize and remove specific type of modified BASE. Then ENTIRE NUCLEOTIDE is removed, and a section of the polynucleotide strand is replaced.
30
*nucleotide-excision repair
- removes and replaces damaged DNA that distorts the DNA structure - 2 strands of DNA are separated, a section of the DNA containing the distortion is removed, DNA polymerase fills in the gap, and DNA ligase seals the filled-in gap.
31
repair of double-strand breaks
- homologous directed repair: if homology is available (ex: sister chromatids) - nonhomologous end joining: joins any broken ends together, error prone
32
translesion DNA polymerases
allow replication to proceed past bulky distortion in DNA but error prone
33
Transposable elements
sequences that can move about the genome Transposition: movement of the transposons
34
Flanking direct repeats
generated when a transposable element inserts into DNA (staircase cut with transposable ele in middle then flanking fills in both side top and bottom) - both move right
35
terminal inverted repeats
inserted bases around transposable ele that face outward from ele
36
what can transposition take place through?
DNA or RNA intermediate
37
Replicative transposition (copy-paste
- AKA “retrotransposons” - A new copy of the transposable element inserts in a new location, and the old copy stays behind. - Requires reverse transcription to integrate into the target site
38
Nonreplicative transposition (cut and paste)
- AKA “DNA transposons” - The old copy excises from the old site and moves to a new site.
39
Control of transposition
Many organisms limit transposition by methylating the DNA in regions where transposons are common.
40
Transposition in humans
About 45% of the human genome comprises sequences that are related to transposable elements, mostly retrotransposons.
41
Transposons cause mutations by
- Inserting into another gene - Promoting DNA rearrangements Examples - Approximately half of spontaneous mutations in Drosophila - Human genetic diseases - The color of grapes
42
Bacteria: Insertion sequences
Carries only the genetic information needed for transposition
43
Bacteria: Composite transposons
Flanked by two copies of an insertion sequence that may itself transpose
44
Bacteria: Noncomposite transposons
- Lack insertion sequences - Possess a gene for transposase and have terminal inverted repeats
45
Eukaryotic: sim transposons to bacteria
Short inverted repeats - P elements in Drosophila - Ac and Ds elements
46
Eukaryotes: Retrotransposons
- Ty elements in yeast - Copia elements in Drosophila - Alu sequences in humans