Unit 18- mutations Flashcards

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1
Q

mutations

A

inherited alterations in the DNA seq
- source of genetic variation
- source of many diseases and disorders

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2
Q

adaptive mutation

A
  • genetic variation critical for evolutionary change that brings about adaptation to new environments
  • stressful conditions, where adaptation might be necessary to survive, induce increased mutation in bacteria
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3
Q

causes of mutations

A
  • spontaneous replication error
  • spontaneous chem changes
  • chemically induced mutations
  • radiation
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4
Q

Big categories of mutations

A
  • somatic mutations (all cells derived from that cell with have the mutation)(mitosis)
  • germ-line mutations (offspring that came from mutant cell will be completely mutated)(meiosis)
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5
Q

base substitution: transition

A

the substitution of a purine for a purine or of a pyrimidine for a pyrimidine

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6
Q

base substitution: transversion

A

substitution of a pyrimidine for a purine or of a purine for a pyrimidine

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7
Q

insertions and deletions: frameshift

A

affects the reading frame

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8
Q

insertions and deletions: in-frame

A

does not affect the reading frame

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9
Q

expanding nucleotide repeats

A

increase the number of copies of a set of nucleotides (fragile sites)(hairpins. 2/3 bases pairing)

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10
Q

forward mutation

A

wild type —> mutant type

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11
Q

reverse mutation

A

mutant type —> wild type

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12
Q

missense mutation

A

amino acid —> diff amino acid

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13
Q

nonsense mutation

A

sense codon —> stop codon

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14
Q

synonymous mutation

A

change the base but don’t change amino acid

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15
Q

silent mutation

A

codon —> synonymous codon (no change in AA seq!)

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16
Q

neutral mutation

A

no change in function

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17
Q

phenotypic effects of mutations

A
  • loss-of-function mutation
  • Gain-of-function mutation
  • Lethal mutation
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18
Q

Suppressor mutation

A

a mutation that hides or suppresses the effect of another mutation
- Intragenic (second mutation at diff site in SAME GENE hides mutation in another site)
- Intergenic (mutation in second gene that hides mutation in first gene)

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19
Q

Factors Affecting Mutation Rates

A
  • Frequency of a change in DNA
  • probability that when a change takes place, that it will be repaired
  • probability that a mutation will be detected
20
Q

strand slippage

A

strand loops out when pairing lots of identical pairs, creating an additional nucleotide if new strand or removal of a nucleotide if template strand

21
Q

unequal crossing over

A

causes crossing over and deletions in the same event

22
Q

radiation

A

greatly increases mutation rates in all organisms

23
Q

thymine dimer

A

two thymine bases dimerized (covalently bonded) and block replication

24
Q

SOS system in bacteria

A

allows bacterial cells to bypass the replication block with a mutation prone pathway

25
Q

Ames Test

A

used to identify chem mutagens
- place mutant bacteria in min medium = no bacteria (control)
- mutant bacteria mixed with chem for mutagenic activity. Placed on min medium = lots of bacteria (his- mutant —> his+ wild type)
The chem was mutagenic as it changed the bacteria

26
Q

repair pathways

A
  • mismatch repair
  • direct repair
  • base-excision repair
  • nucleotide-excision repair
27
Q

mismatch repair

A
  • Mismatched bases and other DNA lesions are corrected by mismatch repair.
  • Enzymes cut out a section of the newly synthesized strand of DNA and replace it with new nucleotides.
28
Q

direct repair

A

restores the correct structures of altered nucleotides

29
Q

base-excision repair

A

glycosylase enzymes recognize and remove specific type of modified BASE. Then ENTIRE NUCLEOTIDE is removed, and a section of the polynucleotide strand is replaced.

30
Q

*nucleotide-excision repair

A
  • removes and replaces damaged DNA that distorts the DNA structure
  • 2 strands of DNA are separated, a section of the DNA containing the distortion is removed, DNA polymerase fills in the gap, and DNA ligase seals the filled-in gap.
31
Q

repair of double-strand breaks

A
  • homologous directed repair: if homology is available (ex: sister chromatids)
  • nonhomologous end joining: joins any broken ends together, error prone
32
Q

translesion DNA polymerases

A

allow replication to proceed past bulky distortion in DNA but error prone

33
Q

Transposable elements

A

sequences that can move about the genome

Transposition: movement of the transposons

34
Q

Flanking direct repeats

A

generated when a transposable element inserts into DNA
(staircase cut with transposable ele in middle then flanking fills in both side top and bottom)
- both move right

35
Q

terminal inverted repeats

A

inserted bases around transposable ele that face outward from ele

36
Q

what can transposition take place through?

A

DNA or RNA intermediate

37
Q

Replicative transposition (copy-paste

A
  • AKA “retrotransposons”
  • A new copy of the transposable element inserts in a new location, and the old copy stays behind.
  • Requires reverse transcription to integrate into the target site
38
Q

Nonreplicative transposition (cut and paste)

A
  • AKA “DNA transposons”
  • The old copy excises from the old site and moves to a new site.
39
Q

Control of transposition

A

Many organisms limit transposition by methylating the DNA in regions where transposons are common.

40
Q

Transposition in humans

A

About 45% of the human genome comprises sequences that are related to transposable elements, mostly retrotransposons.

41
Q

Transposons cause mutations by

A
  • Inserting into another gene
  • Promoting DNA rearrangements

Examples
- Approximately half of spontaneous mutations in Drosophila
- Human genetic diseases
- The color of grapes

42
Q

Bacteria: Insertion sequences

A

Carries only the genetic information needed for transposition

43
Q

Bacteria: Composite transposons

A

Flanked by two copies of an insertion sequence that may itself transpose

44
Q

Bacteria: Noncomposite transposons

A
  • Lack insertion sequences
  • Possess a gene for transposase and have terminal inverted repeats
45
Q

Eukaryotic: sim transposons to bacteria

A

Short inverted repeats
- P elements in Drosophila
- Ac and Ds elements

46
Q

Eukaryotes: Retrotransposons

A
  • Ty elements in yeast
  • Copia elements in Drosophila
  • Alu sequences in humans