U3 AO3 Flashcards

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1
Q

What is photosynthesis?

A

Photosynthesis is a biological process by which photoautotrophs take light energy (from the sun) and use it too form chemical energy in the form of glucose.This glucose is then transported out the stroma for cellular respiration or for conversion into complex carbohydrates.

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2
Q

Where does Photosynthesis occur?

A

Photosynthesis occurs in the chloroplast, as light energy is absorbed by chlorophyll (the green pigment).The main cells in plants that photosynthesis are mesophylls that often contain large amounts of chloroplasts.

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3
Q

What is the stomata and what is its role?

A

the stomata are tiny pores found on the leaves surface whos opening and closing is controlled by guard cells, the stomata allows carbon dioxide diffusion and absorbtion.

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4
Q

Chloroplast structure

A

Each chloroplast is encloused in a double membrane.Within this envelope many membranous fluid filled discs called thylakoids are found.the thylakoids are found in stacks these stacks are known as grana, chlorophyll is embedded into these thylakoid membranes.

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5
Q

Light dependent stage process

A

Occurs in the thylakoid membranes

1.Light excited electrons within the chlorophyll,water previously absorbed splits into oxygen and hydrogen donating an electron to chlorophyll

2.The movement of hydrogen ions (Protons) down its concentration gradient, allows for the formation of coenzyme proton carriers NADPH and ATP

4.Oxygen becomes an output and is diffused out the plant via the stomata, or it is used as an input of aerobic cellular respiration.

5.ATP and NADPH (coenzymes) move to the stroma, where they are used for the light indpenedent stage.

*light-dependent stage traps light energy and converts it to chemical energy in the form of ATP and NADPH, if there is an absence of light, the light dependent stage cannot proceed and photosynthesis stops completely.

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6
Q

What are the inputs and outputs of the light-dependent stage.

A

Inputs
-Light
-h20
-ADP+ Pi
-NADP

Outputs
-Oxygen
-ATP
-NADPH

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7
Q

light independent stage process

A

(occurs in the stroma)

Carbon fixation
Carbon dioxide enters the calvin cycle via the stomata.Carbon fixation occurs as it binds with RuBp to form 3-PGA

Reduction
NADPH molecules formed in light dependent reaction donate their hydrogen ions and electrons, ATP breaks down into ADP + Pi these reactions release energy facilitating further changes with the glucose molecules.A specific G3P carbon molecule is formed which then goes on to contribute to the formation of glucose

Regeneration
Some oxygen molecules left over from reaction combine with hydrogens to form the output of water.NADPH and ATP are then recycled back into the light dependent stage.

The main purpose of the light-independent stage is to build inorganic carbon dioxide into energy rich reduced organic molecules,such as sugar glucose. If the glucose is not required for immediate use by a plant it is converted to starch, a plant storage polysaccharide.

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8
Q

Inputs and outputs of light-independent stage

A

Input
-Carbon dioxide
-NADPH
-ATP

Output
-Glucose
-ADP+ Pi
-NADP+

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9
Q

What is rubisco

A

Rubisco is a key enzyme in the light independent stage (calvin cycle), it has the ability to bind to carbon dioxide to conduct carbon fixation and further facilitate photosynthesis reactions, however it can also bind to oxygen and cause photorespiration too occur.

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10
Q

Rubisco in c3 plants process (light independent stage)

A

Carbon fixation:
-Rubisco uses 3 carbon dioxide molecules and 3 RuBP to produce 6 three carbon molecules (called 3-PGA)

Reduction:
-These 6 3PGA molecules are then converted by ATP and NADPH from the light dependent reactions too make 6 G3P molecules.

Regeneration:
-One G3P molecule leaves cycle to facilitate the production of glucose.The remaining G3P molecules are recycled to generate RuBP with the cycle beginning again.

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11
Q

What is photorespiration?

A

Photorespiration occurs when rubisco binds to oxygen instead of carbon dioxide, it is a wasteful process, disrupting the process of photosynthesis from occuring, meaning less glucose is produced , affecting the plants ability to survive and reproduce.

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12
Q

2 key factors impacting whether rubisco binds to carbon dioxide or oxygen include:

A

-Substrate concentration:the more substrate present (carbon dioxide), the greater chance that rubisco is likely too bind.To increase substrate concentration the stomata opens allowing carbon dioxide into the plant, and oxygen and water to stimultaneously diffuse out.When a plan needs to conserve water however it closes its stomata, this can lead to a build up of oxygen, increasing the likelyhood of Rubisco binding with carbon and the intiation of Photorespiration

-Temperature:At regular or low temperatures rubisco is more likely too bind with carbon dioxide, however when temperatures are higher rubiscos affinity changes and it becomes more likely too bind with oxygen intiating photo respiration instead.

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13
Q

What are C3 plants

A

what we consider “Normal” plants.In C3 plants rubisco is responsible for fixing carbon dioxide into 3 carbon compounds which cycles through the pathway all occuring within a mesophyl cell.

Examples of C3 plants include; trees,wheat,rice,majority or fruits,nuts and vegetables.

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14
Q

What is a C4 plant and how does it seperate its carbon cycle

A

In C4 plants the initial carbon fixation process and the calvin cycle are seperated into 2 seperate cells.Carbon fixation occurs in mesophyll cells however the remainder of the calvin cycle occurs in specialised bundle sheath cells.This means that C4 plants have an additional biochemical pathway compared to C3 plants with adaptions too prevent photorespiration.

Examples of C4 plants include: (sugarcane,corn and switchgrass)

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15
Q

C4 plant calvin cycle process

A

(Occurs in mesophyll cell)
-Carbon dioxide (CO2) enters mesophyll cells and is fixed by the enzyme pep carboxylase, the CO2 molecule binds with the three carbon molecule (PEP) and forms a 4 carbon molecule (oxaloacetate),(pep carboxylase enzyme responsible for carbon fixation in c4 plants has no affinity to bind with O2)
-Oxaloacetate is then converted to the four carbon molecule malate and is transported to bundle sheath cells

(occurs in bundle sheath cells)
-inside bundle sheath cells, malate breaks down and releases CO2 -Carbon dioxide enters the calvin cycle in exactly the same way as c3 photosynthesis
-pyruvate is then formed from the breakdown of malate and is transported back to the mesophyll cell and converted to another molecule, PEP, with the help of ATP
-PEP is then ready to contribute to the fixation of CO2 and production of oxaloacetate and the cycle continues all over again

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16
Q

What are CAM plants

A

CAM plants seperate the stages of the calvin cycle such as carbon fixation over time.CAM plants open their stomata at night and keep it closed during the day to prevent water loss.

Examples of CAM plants include;cacti,vanilla,orchids and pineapples

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17
Q

CAM plants calvin cycle

A

-At night CAM plants open up there stomata to bring in CO2, the CO2 is then fixed into a 4-carbon molecule (oxaloacetate) by the enzyme PEP carboxylase
-Oxaloacetate is then converted to malate which is stored inside vacuoles within the mesophyll cell until the daytime
-During the daytime, CAM plants dont open their stomata to prevent water loss
-Malate is transported out of the vacuole and broken down to release CO2
-CO2 is then free to enter the calvin cycle.

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18
Q

How does light effect photosynthesis

A

Light is an input of the light dependent stage of photosynthesis,without it photosynthesis cannot occur.As the amount of light is increased so is the rate of photosynthesis

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19
Q

How do different colours of light effect photosynthesis?

A

-Photosynthesis occurs the most when a plant is exposed to purple or red light
-Occurs relatively the least when exposed to green light.

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20
Q

What causes the plateau seen in photosynthesis graphs

A

-The maximum mate has been reached since all enzymes in the chloroplasts are operating at their full capacity, that even all inputs were unlimited this would not increase unless their were more enzymes
-One of the other inputs or requirements for photosynthesis is a limiting factor, which is restricting the reaction from hitting a higher reaction rate.

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21
Q

How does temperature effect photosynthesis?

A

Enzymes catalyse photosynthesis reactions, this means photosynthesis occurs optimally when enzymes are working at their optimal temperature, and that in general increasing temperature will increase reaction rat.

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22
Q

How does pH effect photosynthesis?

A

Similar to temperature enzymes involved in photosynthesis function best at their optimal temperature, this means that at their optimal temperature photosynthesis will occur its fastest.

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23
Q

How does carbon dioxide effect the rate of photosynthesis reaction?

A

As carbon dioxide is an input of carbon dioxide by increasing its concentration the rate of photosynthesis will also increase.C4 and C3 plants are less effected by low levels of carbon dioxide since they both have adaptions targeted to avoiding photorespiration.

24
Q

How does water availiability effect the rate of photosynthesis?

A

As water is an input of the light dependent stage, it can effect the rate.However,generally water avalibility is not an issue within plants.To avoid water loss plants close their stomata, which can lead to a build up of oxygen which is negative for the plant.C4 and CAM plants both have adaptions to combat this however C3 plants do not and due to this are more effected by low water avaliability.

25
Q

How does enzyme inhibition impact photosynthesis rate?

A

Since enzymes are vital in photosynthesis reactions, by increasing the amount of enzyme inhibitors present the rate of photosynthesis will decrease.All types of plants are equally effected by enzyme inhibition since all reactions involve enzymes.

26
Q

How can CRISPR technology be used in agricultural crops

A

CRISPR technology can be used to edit genomes of agricultural crops, potentially improving photosynthesis and crop yields.Cas-9 can be directed using synthetic gRNA to target sites, giving scietnists the ability to delte deliterious alleles or add advantagous alleles.This results in a GMO being produced with a new and improved phenotype.

27
Q

Give examples of how CRISPR has been used for agricultural crops

A

has been used to engineer crops to bypass photorespiration,edit the function of chloroplasts making them more efficient, target stomata to reduce the impacts of water stress or directly target rubisco function.

28
Q

What is cellular respiration?

A

Cellular respiration is the process that breaks down large molecules like glucose into high yields of ATP.It can occur via 2 different pathways, Aerobic cellular respiration (includes oxygen), or Anaerobic cellullar respiration (without water)

29
Q

Aerobic cellular respiration

A

Cellular respiration requiring the presence of oxygen. Involves 3 stages in which glucose and oxygen are converted into ATP, carbon dioxide and water. Produces 30 or 32 ATP molecules. Aerobic cellular respiration remains the same in all organisms.

30
Q

Anaerobic cellular respiration

A

Cellular respiration pathway that occurs in the absence of oxygen. Involves glycolysis followed by further reactions that convert pyruvate into lactic acid in animals or ethanol and carbon dioxide in yeast. Produces only 2 ATP.It allows for the replenishment of NAD for continued use in glycolysis.

31
Q

What are the 3 key steps of Aerobic cellular respiration and where do they occur

A

Glycolysis (cytosol)
Krebs cycle (Matrix)
The electron transport chain (Cristae)

32
Q

What is the role of mitochondria in cellular respiration? draw mitochondria diagram

A

Site of the krebs cycle and electron transport chain
(check mitochondria diagram)

33
Q

What is glycolysis (Name its inputs and outputs)

A

occurs in the cytosol, breaks down glucose to form 2 pyruvate molecules,2 ATP and 2 NADPH

inputs
1 glucose
2 ADP + 2Pi
2 NAD+ 2H

outputs
2 pyruvate molecules
2ATP
2NADH

34
Q

What is the krebs cycle (name its inputs and outputs)

A

Occurs in the mitochondrial matrix, pyruvate formed from glycolysis is transported to the matrix, forming 4 carbon dioxides for every 2 pyruvate molecules.the krebs cycle generates lots of high energy electron carriers such as NADH and FADH2 which will then be used in the electron transport chain.

Inputs
2 Acetyl-CoA
(derived from 2 pyruvate)
2 ADP + 2pi
6 NAD + 6H
2FAD + 4H

Outputs
4 carbon dioxide
2 ATP
6 NADH
2 FAD2

35
Q

What is the electron transport chain (Name its inputs and outputs)

A

Occurs in the cristae of the mitochondria.Harnesses the stored energy in the 6 NADH and 2FADH2 molecules to form large quantities of ATP.ATP synthase is an enzyme that uses the concentration gradient of H to synthesise ATP from ADP + Pi.

Inputs
6 Oxygen + 12 hydrogens
26 or 28 ADP + 26 or 28 Pi
10 NADH
2FADH2

Outputs
6 waters
26 or 28 ATP
10 NAD + 10H
2 FAD+ 4H

36
Q

How are enzymes used in cellular respiration, give examples of the most frequent enzymes used.

A

Enzymes are used to catalyse the biochemical reactions in cellular respiration.Some key enzymes used include;
-Pyruvate kinase: Catalyses the final step in glycolysis to produce Pyruvate and ATP
-Citrate synthase: First enzyme used in the Krebs cycle allowing the recycling of Acetoyle-CoA
-Cytochrome c oxidase: Key enzyme complex of the electron transport chain that attaches H and electron to oxygen to produce water.

37
Q

Aerobic cellular respiration process in summary.

A

1.Glucose is broken down by glycolysis in the cell cytosol to produce 2 pyruvate,2 ATP and 2 NADH molecules
2.Pyrubate is then converted to acetyl-CoA in the link reaction before it can enter the krebs cycle in the mitochondrial matrix and produce four CO2 and 2 FADH2, 6NADH and 2 ATP for each original glucose molecule.
3.The high energy electron and proton carriers NADH and FADH2 are shuttled to the electron transport chain embedded in the inner mitochondrial membrane
4.The energy from NADH and FADH2 are used to create a proton gradient across the inner mitochondrial membrane which is harnessed to drive the significant production of ATP by ATP synthase
5.Any space electrons and protons at the electron transport chain are “mopped up” and attached to oxygen to produce water molecules.

38
Q

What happens to NADH and FADH in anaerobic cellular respiration?

A

In anaerobic cellular respiration oxygen cannot bind with hydrogen to form water,NADH and FADH2 can no longer unload and be recycled and because of this the krebs cycle and electron transport chain stop with NADH and FADH2 beginning to accumulate.As a result ATP is lost.

39
Q

cellular respiration in animals when oxygen is low?

A

When oxygen availiability is unsufficient, animals undertake lactic acid fermentation after glycolysis.This process breaks down pyruvate into lactic acid and cycles NADH back to NAD for reuse in glycolysis.However lactic acid cannot accumulate back indeffinently, as it lowers the pH of our cells and blood and has the potential to be toxic in high amounts.To deal with is when oxygen is present again,lactic acid is metabolised back into pyruvate and is used for aerobic cellular respiration.

40
Q

What is lactic acid fermentation?

A

Process of Anaerobic fermentation in animals where pyruvate produced via glycolysis is converted into lactic acid

41
Q

Anaerobic fermentation in yeasts

A

Similar to in animals glycolysis occurs in anaerobic fermentation,however pyruvate is then turned into ethanol and carbon dioxide.This consists of a 2 step process known as Ethanol fermentation.Once again these final steps allow the cycling of NADH back to NAD fpr continued use in glycolysis.Yeasts are unable to metabolise ethanol into any useful products instead ehtanol diffuses out of cells but the ethanol concentration of a yeast culture in a confined can eventually accumulate to toxic levels.

42
Q

What is ethanol fermentation?

A

The process of anaerobic fermentation is yeasts where pyruvate produced via glycolysis is converted to ethanol and carbon dioxide also known as alcohol fermentation.

43
Q

How does temperature and pH affect cellular respiration?

A

Temperature and pH effect the rate of cellular respiration due to their effect on enzymes which are essential for cellular respiration.For both temeprature and pH, cellular respiration rates are hgihest when the enzymes involved are working at their optimal level.For example the enzymes involved in glycolysis typically function best under 7.2 ph since this is the pH of the cytosol.Above pH enzymes risk being denatured, below kinetic energy and collisions are few slowing down the rate of the cellular respiration.

44
Q

How does glucose availability effect cellular respiration?

A

Since glucose is an input of cellular respiration, increasing glucose will increase the rate of cellular respiration, this is until enzymes have reached their saturation point.

45
Q

How does oxygen avaliability effect cellular respiration?

A

Aerobic cellular respiration requires oxygen for the electron transport chain too function, by increasing oxygen availbility then generally cellula respiration rates will icnrease leading to faster ATP production.This is only until enzymes involved reach there saturation rate.Oxygen is not an input of anaerobic respiration however rather determines whether it occurs isnce it only occurs when oxygen levels are low.

46
Q

How does enzyme inhibition effect cellular respiration?

A

enzyme inhibitors decrease the rate of cellular respiration.However they can also be used to regulate respiration.

47
Q

What are biofeuls

A

Fuel made from organic material known as biomass which is plant and animal material that can be sourced from many of our exsisiting industries (such as agriculture and forestry).They offer an alternative to non renweable(refers to material replenished at a slolwer rate than it is used) sources of material such as coal and gas which are commonly used .

48
Q

What are fossil fuels?

A

fossil fuels use fossils formed over tens of millions of years from the remains of dead organic material and are considered non-renewable.

49
Q

What does carbon neutral refer too?

A

state of which there is no net release of carbon dioxide into the atmosphere,meaning there is a balance between the amount of carbon that is emmitted during the combustion of fuel and how much was originally absorbed during the formation process of that fuel

50
Q

How are bioefuels made?

A

made via the process of fermentation,Ethanol is a natural byproduct of fermentation which is harnessed and used.

51
Q

Biofeul process

A

Deconstruction of the original biomass:
-Biomass is treated causing it too breakdown increasing its surface area,making the fermentation process more efficent.

Enzyme catalyzed hydrolysis of complex sugars:
-Starch and cellulose are converted into glucose and other sugars.This is aided by the presence of water in a process known as hydrolysis.

Anaerobic fermentation to produce ethanol:
-Yeast is used to facilitate the anaerobic fermentation of the sugars produced in step 2,large amount of ethanol is produced.ethanol diffuses out of the yeast and is harnessed for biofuel

Final distillation and purification of the ethanol for use of fuel:
-Ethanol is distilled via the removal of water converting It into a useable form called biofuel.

52
Q

What is bioethanol?

A

Derived from the fermentation of plant sugars (Fermentation of carbohydrates)

53
Q

what is biodiesel?

A

Derived via the formation of fatty acids,combined with short chain alcohols (breakdown of lipids and fats)

54
Q

What are some of the strengths and weaknesses with biofuel production

A

Strengths
-Positive climate impact reducing carbon emissions, since biofuels are carbon neutral
-gives us energy security as our energy needs grow.Biofeusl reduce our reliance on fossil fuels and help provide ongoing energy.
-localised energy:Biofuels reduce international reliance, allowing for community based control over energy production.

weaknesses:
-food vs fuel, on a large scale using agricultural land for biofuel production can limit its avaliability for food produciton.
-Cost and difficulty to uptake:Biofeuls typically cost more to produce then traditional fuel and isint always compatiable with out current energy systems and vechiles.The biofuel industry is also significantly smaller in comparison to the traditional fuel industry.
-Second order environmental impacts:While biofuels produce less carbon emmissions they also risk producng increased nitrtious oxide emmissions,deforrestation and a reduced genetic diversity of some crops.

55
Q

photosynthesis equation

A

6CO2 + 12H2O —-(light)——— C6H12O6 + 6O2 + 6H20