U3 AO2 Flashcards
What is a protein?
A protein is a biomacromocule made up of amino acid monomers folded into 3d shape
What is a polypeptide?
Polymer made up of amino acid monomers
What does the proteome refer to?
All the proteins expressed within an organism
Name examples of protein function
Enzyme:Catalyse Enzymes:Enzymes are catalysts meaning they speed up chemical reactions without using themselves up (examples include; Amylase,RNA polymerase and Catalase)
Transport:Transport proteins are typically embedded in membranes,controlling entry and exit from the cell (glucose channels,chloride-channels) Structural:Structural proteins support cell and tissue shape (Keratin,Elastin) Hormones:Hormones proteins are chemical messengers used to communicate and induce changes in cells (insulin,Adrenline) Receptors: Receptor proteins recieve signals from their environment (Hormone receptors) Defence:Defence proteins are involved within the immune system,recognising and destroying pathogens. (Antibodies,compliment proteins) Motor/contractile proteins:Proteins involved in the contraction and movement of mosucles. (kinesin)
Storage:Storage proteins act as reserves for metal ions and other organisms throughout a molecule
What bonds hold amino acids together?
Peptide bonds formed via a condensation polymerisation reaction
where does the joining of amino acids occur?
At the ribosome during translation
Draw an amino acid
NH2——-C———-COOH
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R
What does the R group do
Determines the function of the amino acid, and its folding.
What makes proteins so functionally diverse
The functional diversity of proteins is due to there number of combinations that r groups and amino acids interact with each other and are able to fold into different polypeptides.
Primary Protein structure:
the order of nucleotides/ the sequence of amino acids making up a polypeptide chain
Secondary Protein structure:
The formation of alpha helix and beta pleated sheats.
Teteriary structure:
The functional 3d shape of a polypeptide (Disulphide bonds are strong covalent bonds that can form between 2 sulphur atoms (in the r group),further stabilising the protein structure)
Quaternary structure:
Functional 3d shape of a protein containing 2 or more polypeptides. (Polypeptide chains with tetiary structure that have a prosthetic group attached, a non-protein group attatched to protein are considered to create quaternery structure)
Nucleic acids
Polymer made up of nucleotide monomers, examples include DNA and RNA
What bonds hold together nucleic acids
Phosphodiester bonds formed via a condensation polymerisation reaction
What is a condensation polymerisation reaction?
Reaction between 2 monomers forming a larger polymer product releasing water as a bypass, an endothermic reaction taking in energy
What direction is DNA read in
5’-3’
Genome
All the genes within an organism
Describe DNA structure
DNA is composed of 2 strands that run antiparallel to eachother joined together by phospohodiester bonds formed via a condensation polymerisation reaction.These 2 chains are joined together by the conjugate base pairing of complementary nucletodies held together by hydrogen bonds.
mRNA (Messenger mRNA)
-carries genetic information from nucleus to ribosome during protein synthesis
tRNA (Transfer RNA)
-Brings complementary anti-codons and specific amino acids to ribosome during protein synthesis
rRNA
-Serves as the main structural component within cells
Differences of RNA to DNA
RNA compared to DNA contains uracil rather than thymine and contains a ribose sugar rather than deoxyrybose, it is also rather single stranded than double.
What is the genetic code
series of rules that determine how genetic information is transcribed and translated into functional proteins.Protein synthesis is determined by the genetic code
Universal:
The idea that all living organisms use the same codons to form the same amino acids
Unambigious:
Each codon can only code for 1 amino acid
Degenerate or redudant:
1 amino acid can be coded for by a range of different codons
Non overlapping:
Each codon is read in groups of 3 seperate to other amino acids.
Regulator genes-
produce proteins that control the action of other genes,Turn them on and off (repressor proteins).
Structural genes-
Produce proteins that become part of the structure and the functioning of the organism for example keratin
What does the promoter region of the gene do
The promoter region is an upstream (5’ end) binding site for RNA polymerase during transcription.Therefore the promoter region effectively denotes the starting position and direction of transcription.
What are introns
Non-coding regions of DNA that are removed during RNA processing.Introns can only be found in Eukaryotes.
What are exons
Exons are the coding regions of DNA which are transcribed and then translated to form the final protein.Found in both eukaryotes and prokaryotes.
Termination sequence
Represents a sequence of DNA that signals for the end of transcription
What is the operator region?
The operator region serves as binding site for repressor proteins which can then inhibit gene expression.This region is typically only found in prokaryotes.
What is the leader region?
The leader region is the section of DNA just upstream of the coding region and downstream of the promoter and operator.Leader region plays a critical role in the gene regulation via attenuation.
What does gene expression mean?
Gene expression is the process of reading stored information within a gene to create a functional,structural protein.
What is transcription?
Process of which a section of DNA is coded producing a mRNA molecule
Write the process of transcription including RNA processing
- Occurring in the nucleus(in Eukaryotes) in cytoplasm (in bacteria), DNA helicase unzips DNA, and RNA Polymerase binds to the promoter region initiating transcription
- RNA Polymerase runs along template strand in a 3’-5’ direction building a complementary template strand in a 5’-3’ direction, stopping once its hits a stop codon(UAG,UGA,UAA) falling off, leaving us with Pre-mRNA.
3.Methyl-g cap is added to the 5’ prime end of Pre-mRNA molecule and a poly-a-tail is added to the 3’ prime end - Spliceosomes cut out introns and splice together exons leaving us with m-RNA.
What is translation?
Process by which mRNA sequence is read to produce corresponding amino acid sequence to build a polypeptide.
What is the process of translation
Intiation
-The 5’ end of the mRNA molecule binds to the ribosome and is read until the start codon (AUG) is recognised.Then a tRNA molecule with a complementary anti codon (UAC) binds to the ribosome and delivers the amino acid methionine,signifying the start of translation
Elongation- After the first amino acid attaches, the mRNA molecule is fed through the ribosome so the next codon can be matches to its complementary tRNA anti-codon.Then complementary tRNA molecules deliver specfic amino acids to the ribosome, which bind to adjacent amino acids with a peptide bond via a condensation reaction.The first tRNA molecule then leaves the ribosome and continues to piock up amino acids, growing the amino acid chain
Termination-Linking of amino acids in the polypeptide chain continues until the ribosome raches a stop codon.The stop codons signals the end of translation/POlypeptide chain is then released by the ribosome into the cytosol or endoplasmic recticulum.
What are DNA binding proteins
bind to regions of nuclear DNA near genes and directly switch these genes on or off.These proteins carry a net positive charge that enables them to bind to DNA, which has a set net negative charge