Translation (Lecture 14) Flashcards

1
Q

What does the ribosome consist of?

A

40S and 60S subunits

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2
Q

What is the only region where we translate? What characterizes this region?

A

open reading frame that always starts with start codon AUG and ends with a stop codon

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3
Q

How many open reading frames do polycistronic transcripts have and why?

A

many since they have multiple start and stop codons

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4
Q

What is pre-initiation?

A

getting the ribosome and other components to bind to transcript so that it can begin scanning transcript until it reaches start codon

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5
Q

What is polyprotein synthesis?

A

whole genome gets transcribed which will get cleaved into separate proteins by proteases

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6
Q

When does polyprotein synthesis occur?

A

post-translation

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7
Q

What is the leaky scanning method of transcription?

A

ribosome skips start codon and finds another downstream start codon where it will start making protein off of

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8
Q

When does leaky scanning occur?

A

during translation

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9
Q

What is ribosomal frameshifting?

A

overlapping ORFs || ribosomes are shifting that open-reading frame because a sequence in the transcript causes a tRNA molecule slippage in reading the sequences so the next tRNA will bring in a different amino acid than what it was supposed to bring

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10
Q

When does translation begin?

A

at the start codon AUG

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11
Q

What does ribosomal frameshifting cause?

A

mutations in the protein sequence = makes different protein products

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12
Q

What are internal ribosomal entry sites?

A

ribosome enters mRNA downstream and starts translating downstream of 5’ cap

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13
Q

What role do secondary structures play in translation?

A

can be a site where small subunit to bind and begin scanning or a marker for subunit to past and scan

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14
Q

What is ribosomal shunting?

A

small ribosome will skip secondary structure and start at one AUG past it or may skip to another start codon

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15
Q

What is important in eukaryotic translation?

A

initiation step

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16
Q

What 3 things form the pre-initiation complex? What binds to the 5’ cap?

A

40S small subunit, initiator tRNA molecule, initiator factors (eIF2a)

17
Q

What is the purpose of initiation factors?

A

ensures translation doesn’t start until the AUG start codon

18
Q

What are some reasons why a cell would need to stop/pause translation?

A

amino acid deprivation, ER stress, virus detection in the cell (such as detection of dsRNA)

19
Q

How does the cell pause/stop translation?

A

targets the eIF2a via eIF2a kinases that phosphorylate eIF2a so that eIF2B can sequester and permenantly hold onto eIF2a until it gets dephosphorylated

20
Q

What is the enzyme that gets activates when dsRNA is detected?

A

Pkr

21
Q

What is Pkr?

A

a steady state monomeric protein

22
Q

What is Pkr induced by?

A

interferons = immune proteins produced by immune system; if cell detects viruses = will turn on interferon production

23
Q

What is the sequence of events of Pkr?

A

Pkr binds to dsRNA and activates &raquo_space;> dimerizes and phosphorylates each other and eIF2a &raquo_space;»» translation paused/stop

24
Q

How do viruses stop the phosphorylation of eIF2a?

A

targets Pkr but can also inhibit eIF2 and target Perk (induced upon ER stress during protein production)