The Molecular Basis of Inheritance Flashcards
Griffith
● Performed experiements with several different strains of the bacterium Diplococcus pneumoniae in 1927
● Some strains are virulent and cause pneumonia in human and mice, and some strains are harmless
● He discovered bacterial transformation
Bacterial transformation
● bacteria have hte ability to transform harmless cells into virulent ones by transferring some genetic factor from one bacteria cell to another
Avery, Macleod, and McCarty
● Published their classic findings that Griffith’s transformation factor is DNA in 1944
● It proved that DNA was the agnet htat carried the genetic characteristics from the virulent dead bacteria tot he living nonvirulent bacteria
● Provided direct experimental evidence that DNA, not protein, was hte genetic material
Hershey and Chase
● Carried out experiments that lent strong support to the theory that DNA is the genetic material in 1952
● Proved that DNA from the viral nucleus, not protein from the viral coat, was infecting bacteria and producing thousands of progeny
Rosalind Franklin
● Carried out the X-ray crystallography analysis of DNA that showed DNA to be a helix in 1950-1953
Watson and Crick
● Proposed the couble helix structure of DNA in a one-page paper in the British journal Nature in 1953
● Two major pieces of informaiton they used were hte biochemical analysis of DNA and the X-ray diffraction analysis of DNA
Meselson and Stahl
● Proved that DNA replicates in a semiconservative fashion
Double helix
● Structure of DNA molecule
● Shaped like a twisted ladder, consisting of two strands unning in opposite directions–antiparallel
Nucleotides
● Consists of a 5-carbon sugar–doxyribose, a phosphate, and a nitrogen base
Nitrogenous bases
● Adenine (A) – purines
● Thymine (T) – pyrimidines
● Cytosine (C) – purines
● Guanine (G) – pyrimidines
Histones
● A large amount of proteins that combine with eukaryotic DNA
● Only separates briefly during replication
Chromatin
Comples of DNA plus histones
Nucleosomes
● THe double helix of DNA wraps twice around a core of histones forms nucleosomes
● Looks like beads on a string
Deoxyribonucleic aci
● DNA
● Double helix
● Made up of nucleotides
Ribonucleic acid
● RNA
● SIngle-strandd helix
● Four bases: Adenine, Cytosine, Guanine, and Uracil (U) that replaces thymine
● Has 5-carbon sugar called ribose
DNA replication
● The making of an exact replica of the DNA molecule by semiconservative replication
● THe DNA double helix unzips, and each strand serves as a template for the formation of a new strand composed of complementary nucleotides: A with T, C with G
● THe two new molecules each consist of one old strand and one new strand
Replication fork
● A Y-shaped region where the new strands of DNA are elongating
● At each end of the replication bubble
Replication bubbles
● Site of DNA replication
● Eventually all replication bubbles fuse
DNA polymerase
● Enzyme that catalyzes the antiparallel elongation of the new DNA strands
● Builds a new strand from the 5’ to the 3’ direction by moving along the template strand and pushing the replication fork ahead of it
● In humans, the rate of elongation is about 50 nucleotides persecond
● Cannot initiate synthesis
RNA primer
● produced by primase
● First binds to the template, allowing DNA polymerase to add nucleotides to to 3’ end of it
Primase
● Produce RNA primer
Leading strand
● Unbroken, linear fashing that is built in one of the strand
● Formed toward the replication fork
Lagging stand
● Formed away from the replication fork
● Form Okazaki fragments
Okazaki fragments
● Fragments in the lagging strand
● about 100-200 nucleotides long and will joined into one continuous strand by theenzyme DNA ligase
Helicases
● enzymes that untwist the double helix at the replication fork
● Separate the two parental strands, making these strands available as templates
Single-stranded binding proteins
● Act as scaffolding, holding the two DNA strands apart
Topoisomerases
● Lessen the tension on the ithgtly wound helix by breaking, swiveling, and rejoining the DNA strands
Mismatch repair
● proofreading that corrected errors
● Carries out by DNA polymerase
Telomeres
● Nonsesne nucleotide sequences at the ends of hte chromomes in eukaryotes
● Each time the DNA replicates, some nucleotides from the ends of the chromosomes are lost
● THye are created and maintained by the enzyme telomerase
● Normal body cells contain little telomerase–when it gets shorter overtime, this may serve as a clock that counts cell divisions and causes the cell to stop dividing as the cell ages
Transcription
● Process by which the information in a DNA sequence is copied (transcribed) into a complementary RNA sequence
Messenger RNA
● When a sequence of DNA is expressed, one of two starands of DNA is copied into mRNA according to the base-pairing rules
Ribosomal RNA
● Structural
● Along with proteins, it makes up the ribosome, which consists of two subunits, one large and one small
● THe ribosome has one mRNA binding site, and three tRNA binding sites, known as A, P, E sites
● Ribosome is a protein synthesis factory
Transcription RNA
● tRNA is shaped like a coverleaf and has a binding site for an amino acid at one end and another binding site foran anticodon sequence that binds to mRNA at the other
Initiation (trascription)
● RNA polymerase recognizes and binds to DNA at hte promoter region
● Once RNA polymerase is attached to the promoter, DNA transcription of the DNA template begins
Promoter
● Tells RNA polymerase where to begin transcription and which of the two strands to transcribe
● Transcription factors recognize the TATA box, and mediate hte binding of RNA polymerase to the DNA
TATA box
● a key area within the promoter, the TATA box, and mediate hte binding of RNA polymerase to the DNA
Transcription initiation complex
● THe completed assembly of transcription factors and RNA polymerase bound ot the promoter
Elongation (transcription)
● Contieus as RNA polymerase adds nucleotides to the 3’ end of a growing chain
RNA polymerase
● Binds to DNA at the promoter region
● Adds nucleotides to the 3’ end of a growing chain
● Pries the two strands of DNA apart and attaches RNA nucleotides according to the base pairing rules
● Has mechanisms for proofreading during transcription
Transcription unit
● The stretch of DNA that is transcribed into an mRNA molecule
● Each unit consists of codons
Codon
● Triplets of bases in mRNA
● Code for specific amino acids
Termination (Transcription)
● Final stage in transcription
● Elongation continues for a short distance after the RNA polymerase transcribes the termination sequence (AAUAAA)
● At this point, mRNA is cut free from the DNA template
RNA processing
● Before the newly formed pre-RNA strand is shipped out of the nucleus to the ribosome in the cytoplasm, it is altered or processed by a series of enzymes
● 5’ cap
● Poly A tail
● Splicing
5’ cap
● Consisting of a modified guanine nucleotide is added to the 5’ end
● This cap helps the RNA strand bind to the ribosome in the cytoplasm during translation
Poly A tail
● Consisting of a tring of adenine nucleotides
● Added to the 3’ end
● THis tail protects the RNA strand from degradation by hydrolytic enzymes, and facilitates the release of mRNA from the nucleus into the cytoplasm
Splicing
● Introns are removed by snRNPs, small nuclear ribonucleoproteins, and splicesomes
● This removal allows only exons to leave the nucleus
● mRNA that leaves the nucleus is a great deal shorter than the original transcription unit
Introns
● Noncoding regions of the mRNA
● AKA intervening sequences
Exons
● Expressed sequences
Alternative splicing
● Different RNA molecules are produced from the same primary transcript, depending on which RNA segments are treated as exons and which as introns
● Regulatory proteins specific to a cell type control intron-exon choices by binding to regulatory sequences within the primary transcript
Translation
● The process by which the codons of an mRNA sequence are changed into an amino acid sequence
● Include three steps: initiation, elongation, termination
Anticodon
● Nucleotid triplet on one end of the tRNA molecule specific to an amino acid
● Complementary to codons
Aminoacyl-tRNA synthetase
A specific enzyme that joins each amino acid to the correct tRNA
Start codon
● Codon AUG
- also codes for methionine
Stop codon
● UAA, UGA, UAG
● Terminate all sequences
Wobble effect
● The pairing rules for the third base of a codon are not as strict as they are for the fist two bases
● Ex) UCU, UCC, UCA, UCG all code for the amino acid serine
Initiation (Translation)
● Begins when mRNA becomes attached to a subunit of the ribosome
● First codon is always AUG
- It must be positioned correctly in order for transcription of an amino acid sequence to begin
Elongation (Translation)
● Continues as tRNA brings amino acids to the ribosome and polypeptide chain is formed
● One mRNA molecule is generally translated simultaneously polyribosomes