The Human Microbiome- 30 Flashcards
Microbiome
Complete collection of microorganisms, and their genes within a particular environment.
Microbiota
Individual microbial species in a biome-bacteria, fungi, archaea and viruses
The HMP goals:
5
- To develop a reference set of
microbial genome sequences and to perform preliminary
characterization of the human
microbiome - To explore the relationship
between disease and changes in the human microbiome - To develop new technologies and tools for computational analysis
- To establish a resource repository
- To study the ethical, legal, and
social implications of human
microbiome research
Human Microbiome:
Most rapidly changing
field in human biology
The aim of the HMP is to
Characterize microbial communities found at multiple human body sites and to look for correlations between
changes in the microbiome and human health.
HMP emphasis on
oral, skin, vaginal, gut, nasal/lung
different sites different microbes
strong niche specialization both within and among individuals
YOUR microbiome, is not MY microbiome
diversity and abundance of each habitat’s signature microbes vary widely
even among healthy subjects
HMP documented
81–99% of the genera, enzyme families and community configurations occupied by the healthy Western microbiome
The community can change, but the functions do not (as much)
Observed variations in both pathways and microbes changed with clinical
metadata along ethnic/racial differences
> 92 bacterial and 26 archaeal groups exists, but human microbial communities are dominated by 4:
Firmicutes
Bacteroidetes
Actinobacteria
Proteobacteria
Few bacterial groups, but
many different species and strains
Functional foods
food claimed to have a
health-promoting or disease-preventing property beyond the basic function of supplying nutrients.
At least 50% of Japanese functional foods target
‘intestinal health’.
Probiotics
live microorganisms
(fermented foods – yoghurt)
aid digestion
most common types of microbes used as probiotics
Lactic acid bacteria (LAB) and
Bifidobacteria
Survive transit through stomach
and duodenum
Probiotics Potential Benefits:
chronic intestinal inflammatory diseases,
prevention and
treatment of pathogen-induced diarrhea,
urogenital infections.
Prebiotic
Form of fibre
an ingredient that beneficially nourishes the good bacteria already in the large bowel or colon.
stimulate the growth of probiotics (target Bifidobacteria and Lactobacilli)
Prebiotic
The body itself does not digest these plant fibres. so what does it do?
fibres act as a “fertilizer” to promote the growth of many good bacteria in the gut.
provide many digestive and general health
benefits.
Prebiotics are from
oligosaccharide
whole grains, bananas, onions,
garlic, honey and artichokes.
Clostrodium Difficile
bad bacterial flora
harmful following a course of antibiotics when able to proliferate.
Fecal microbiota transplantation
FMT
successful treatment for Clostridium difficile infection (CDI)
HMP:
4
i. provided blueprint for large scale microbiome studies
ii. Unique site, unique microbiome
iii. YOUR microbiome, is not MY microbiome
iv. Species change over time, but not functions
HM dominated by
4
Firmicutes,
Bacteroidetes,
Actinobacteria
Proteobacteria
Functional foods Potential role in:
Intestinal development and function,
metabolic functions,
protection against pathogens, and immune system