Test 4 Flashcards

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1
Q

Not all signaling molecules act through PM receptors. Some bind to receptors found in the cytoplasm . Others bind to nuclear receptors. What type of signal could enter the cell by simple diffusion to activate a cytoplasmic receptor?
A) glucose
B) testosterone (steroid)
C) insulin (hydrophilic protein)
D) ATP
E) all of the above

A

B) testosterone (steroid)

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2
Q

A GPCR is a type of …. Membrane protein.
A) single-pass integral
B) monotopic integral
C) multi-subunit integral
D) peripheral
E) multi pass integral

A

E) multi pass integral

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3
Q

Define ‘signal transduction’.

A

Signal Transduction is the conversion of an extracellular message into (one of a range of) an intracellular response.
It involves a cascade of reactions that amplifies the original signal.
Means of a cell sensing a signal from its environment.

  • Three steps:

(1) reception - cell senses a signal/environment using receptor proteins

(2) transduction: relaying the message

(3) response : activation of cellular response

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4
Q

Explain how a signal molecule which does not enter a cell can alter cell activities.

A

Ligand, or signal molecule, binds to receptor outside of the cell, which triggers a conformational change, resulting in a subsequent transduction/response scheme

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5
Q

Differentiate between an extracellular ligand and a cytoplasmic ligand.

A

Extracellular ligand: first messenger, binds to receptor outside cell

Cytoplasmic ligand: secondary messengers, propagate transduction

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6
Q

Describe the receptor-ligand interactions. Compare this interaction to previous intermolecular interactions discussed in class (e.g. enzyme-substrate, solute-transporter).

A

Receptor-ligand interaction is highly specific: fits into ligand-binding domain on receptor
- Interaction is temporary
- Receptors are saturable -> finite number of receptors

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7
Q

Differentiate between a paracrine hormone and an endocrine hormone.

A

Paracrine hormone/signaling: which local regulator diffuses through extracellular fluid

Endocrine hormone: synthesized in a particular location, secreted into the blood to travel long-distances, induces a response in a target cell/tissue located a distance from the original source

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8
Q

Explain signal amplification and its significance in cell signaling.

A

Relatively small quantities of ligand are often sufficient to elicit a response from target cell
At each step in the resulting cascade: a signaling intermediate stimulates the production of many molecules needed for the next step, and this is repeated over and over again
Producing more and more secondary messengers
- Ex. epinephrine: GPLR in 1:1 ratio, GPLR: G protein in 1:100 ratio, Glycogen phosphorylase: G-1-P in 10^6:10^8 ratio

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9
Q

Explain why not all cells respond to a given signaling molecule.

A

If a specific receptor is not expressed for that given signaling molecule, the corresponding cell will not respond

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10
Q

Describe in detail the class of proteins known as GPCRs (aka GPLRs).

A
  • Multipass integral membrane proteins
  • Ligand binding causes a change in receptor conformation that then activates a particular G protein
  • Structure:
  • 7 trans-membrane spanning domains
  • N-terminal in EC, C-terminal in CYT
  • ligand-binding domain (EC), G-protein interaction domain (CYT)
  • Represent over half of the current drug targets
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11
Q

Describe in detail the class of proteins known as G proteins.

A

Family of guanine-nucleotide binding proteins
- G protein acts as an on/off switch: when bound to GDP, the G protein is inactive; GTP bound is active form

Two classes:
- heterotrimeric - peripheral membrane proteins, alpha beta and gamma subunits;
- monomeric (ex. Ras) - cytoplasmic, not linked to receptors

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12
Q

Illustrate the mechanisms involved in transducing a signal using G-proteins.

A

Heterotrimeric G proteins (Gαβγ) mediate signal transduction cascades via interactions with GPLRs

  • Alpha subunit is largest: binds to GDP or GTP, has GTPase activity
  • When Gα binds to GTP, it detaches from the Gβγ subunits which are permanently bound together
  • Gα and/or Gβγ propagates signal cascade, depends on identity of G protein
  • Mechanism:
    1. ligand binds to receptor,
    2. Gα releases GDP and binds to GTP activating G protein: subunits separate
    3. G protein subunits activate or inhibit target proteins
    4. Gα subunit hydrolyzes its bound GTP to GDP and becomes inactive
    5. subunits recombine to form inactive G protein
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13
Q

Glycogenolysis involves …
A) glucose synthesis from non-carbohydrate sources
B) oxidation of glucose
C) hydrolysis of glycogen to release glucose-1-phosphate
D) phosphorolysis of glycogen to release glucose-1-phosphate
E) reduction of CO2 to form carbohydrates

A

D) phosphorolysis of glycogen to release glucose-1-phosp

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14
Q

The target of glycogen phosphorylase is glycogen. What reaction will glycogen phosphorylase catalyze involving glycogen?
A) it will remove phosphate from glycogen
B) it will transfer phosphate to glycogen, using ATP as a phosphate source
C) it will transfer phosphate to glycogen using P¡ as a phosphate source
D) it will hydrolyze glycogen
E) it will hydrogenate glycogen

A

C) it will transfer phosphate to glycogen using P¡ as a phosphate source

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15
Q

Glycogen phosphorylase will be activated by a …..and deactivated by a ……
A) kinase; phosphatase
B) phosphate; phosphorylase
C) phosphorylase; kinase
D) Phosphorylase; phosphatase
E) kinase ; phosphorylase

A

A) kinase; phosphatase

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16
Q

Glycogen synthase catalyzes which reaction?
A) glycolysis
B) gluconeogenesis
C) glycogenolysis
D) glycogenesis
E) glyconeolysis

A

D) glycogenesis

17
Q

PKA also phosphorylates glycogen synthase. The phosphorylation will …. Glycogen synthase
A) activate
B) inactivate
C)not enough information given

A

B) inactivate

18
Q

Where is most of the Ca2+ stored in cells?
A) cytoplasm
B) golgi
C) mitochondria
D) nucleus
E) smooth ER

A

E) smooth ER

19
Q

What is cAMP?

A

Adenosine triphosphate (ATP) is converted into adenosine-3,5 cyclic monophosphate (cAMP)

20
Q

Outline the general signal transduction pathway involving cAMP.

A

• formed by an intramolecular reaction in which carbon 3 of ribose is linked to the alpha phosphate of ATP.
A ligand binds to a receptor. This triggers a signal and a conformational change. The causes the GDP to be switched out to a GTP this GTP triggers a conformational change the Gα subunit attaches to the adenyly cyclase which triggers ATP to making cAMP. Then cAMP is hydrolyzed into AMP by phosphodiesterase and the G protein goes back to its inactive state.

21
Q

Explain how cAMP levels are regulated by adenylyl cyclase and phosphodiesterase.

A

-Adenylyl cyclase is inactive until the Gα subunit and GTP attach, triggering G proteins are active only a short time: can respond quickly to changing conditions.
-once a G protein becomes inactive, adenylyl cyclase stops making new cAMP; however cAMP still remains and continues to propagate signal
• cAMP that remains is degraded by phosphodiesterase.

22
Q

Recall the definitions of a ‘kinase’, a ‘phosphorylase’ and a ‘phosphatase’.

A

-phosphorylase (type of transferase)- catalyze the addition of phosphate groups (PO43-) to molecules, involving inorganic phosphate (pi)

-kinase (type of transferase)- catalyze the addition of phosphate groups to target molecules, involving ATP.

-phosphatase (type of hydrolase)- catalyze the hydrolytic removal of phosphate group from target

23
Q

Recall the pathways involved in glycogen metabolism.

A

Glycogenesis and glycogenolysis are caused by a reversible reaction where glycogen phosphorylase is activated and turns glucose 6 to glucose 1 when energy needs are not met, and phosphoglucomutase does the opposite when needs are net. Phosphoglucomutase is activated allosterically by ATP.

24
Q

Explain the mechanisms involved in regulating the glycogen phosphorylase enzyme.

A

glycogen phosphorylase b, inactive can become active using phosphorylase kinase and ATP-> ADP glycogen phosphorylase, active can become inactive using phosphorylase phosphatase and H2O -> inorganic phosphate cAMP regulates protein kinase A (PKA) which then regulates phosphorylase kinase.

25
Q

Outline the signaling cascade involved in the “fight or flight” response, as discussed in class. Students should specifically be able to describe the epinephrine-triggered increase in blood-glucose levels as part of this response.

A

Threat-> hypothalamus-> pituitary->adrenal gland (top of kidney, endocrine gland)->epinephrine (hormone, released from adrenal gland)-> epinephrine molecules on heart cell and liver cell (target cells)->results in increased heart rate and breakdown of liver glycogen

Symptoms of fight or flight: dilated pupils, increased heart rate, increased breathing rate, glycogen breakdown in liver->increased blood glucose levels

26
Q

Describe in detail the IP3/DAG signaling pathway.

A

receptor is inactivated by binding of its ligand, subunits split up, GTP-Gα complex binds to phospholipase C activating it causing cleavage of PIP2 into IP3 and DAG, IP3 is released into the cytosol where it triggers calcium release and DAG remains in membrane where it activates protein kinase C

27
Q

Recall the basal cytoplasmic [Ca2+]. Compare that to [Ca2+] in the ER and/or the extracellular space.

A

Resting, unstimulated [Ca2+] levels: ~10^-4 mM
Stimulated, levels increase
Higher concentration in cytoplasm: [Ca2+]out: ~1 mM
Concentration in ER: [Ca2+]ER: ~0.2-0.3 mM

28
Q

Describe the structure of the calmodulin protein.

A

each of the ends are like globular hands

29
Q

Explain the regulation of calmodulin involving calcium levels.

A

when [Ca2+]cyt> 10^-4mM: calmodulin binds four calcium ions, calmodulin changes conformation resulting in an active complex, the two globular “hands” of the complex wraps around a binding site of a target protein

30
Q

List and describe the different signaling components involved in calcium-mediated signaling.

A

calcium-induced nitric oxide production results in vasodilation. blood vessel-> endothelial cell and smooth muscle cell

acetylcholine binds to G protein linked receptor -> IP3 to ER -> Ca2+ activates calmodulin-> activates nitric oxide synthase—- to smooth muscle cell -> activates guanylyl cyclase -> using GTP to produce cGMP-> activates protein kinase G-> muscle relaxation- dilation of blood vessels.

31
Q

Describe the general tissue structure of a blood vessel.

A

blood vessel is a smooth muscle cell in the outer layer and the endothelial cell inner layer as a tube shaped.

32
Q

Outline in detail the steps involved in calcium-mediated vasodilation.

A

Acetylcholine binds to a receptor on the endothelial cell, activating phospholipase c via gpcr and releasing ip3. Ip3 frees calcium into the cytoplasm, which activates calmodulin. Calmodulin activates NO synthase, and the NO travels into the smooth muscle cell to activate guanylyl cyclase. Guanylyl cyclase is an enzyme that converts GTP into cGMP. In the same way as cAMP activates PKA, cGMP activates PKG, which creates the vasodilation response.

33
Q

IP3 is released from ….
A) smooth ER
B) PIP2 in the plasma membrane
C) adenylyl cyclase
D) GPCR
E) G-alpha

A

B) PIP2 in the plasma membrane

34
Q

As common targets of kinases, what do serine, threonine and tyrosine all have in common?
A) they are all basic
B) they are all acidic
C) they are all proteins
D) they all have hydroxyl groups
E) more than one of the above

A

D) they all have hydroxyl groups

35
Q

What reaction does glycogen synthase catalyze ?
A) glycogenesis
B) gluconeogenesis
C) glycolysis
D) glycogenolysis
E) glycogen decarboxylation

A

A) glycogenesis

36
Q

Glycogenesis will be …. Regulated by the insulin signal transduction pathway
A) activated
B) deactivated

A

A) activated

37
Q

Diabetes is a result of chronically…. Blood glucose levels
A) high
B) low

A

A) high

38
Q

One treatment of type II diabetes involves reducing the activity of the liver. Reduction in which of the following pathways would help alleviate Type II diabetes ?
A) glycolysis
B) glycogenolysis
C) glycogenesis

A

B) glycogenolysis