RNA Synthesis and Transcription in Bacteria Flashcards

1
Q

Two parts of gene expression

A
  1. DNA –> RNA = TRANSCRIPTION

2.RNA –> protein = TRANSLATION

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2
Q

Pulse-chase method

A

Infecting nucleotides with radioactive components and traced in cells

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3
Q

Difference between RNA and DNA

A

RNA:
- thymine replaced by uracil
- ribose sugar instead of deoxyribose. Ribose has one more OH group

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4
Q

What form is RNA in?

A

A type. DNA IS B TYPE HELIX

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5
Q

Where does RNA synthesis take place on the strand?

A

between 3’ hydroxyl of one nucleotide and 5’ phosphate on adjacent one

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6
Q

mRNA

A

Messenger RNA produced by protein producing genes. Intermediate between DNA and protein. Only type of RNA that undergoes translation

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7
Q

What are the functional RNAs?

A

Transfer RNAs (tRNAs) and Ribosomal RNA (rRNA)

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8
Q

Which of the following RNA are involved in the process that leads to protein synthesis?

A

mRNA, tRNA, rRNA

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9
Q

How long is the transcription bubble of unwound DNA?

A

14 bp. ~8 RNA nucleotides paired with DNA inside transcription bubble

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10
Q

Transcription vs Replication?

A

Transcription:
- DNA-dependent RNA polymerases
- DNA unwinding is minimal
- Some regions copied at high levels; some low. Level of expression can be changed

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11
Q

How are bacterial genes expressed?

A

In groups called OPERONS consisting of genes relating to similar metabolic function

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12
Q

Where does RNA transcription begin?

A

Promoter upstream (5’)

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13
Q

Where does RNA transcription end?

A

Terminator region downstream (3’) from coding segment of gene

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14
Q

What catalyzes transcription in RNA?

A

RNA polymerase. Makes RNA from DNA but does not bind promoter or initiate RNA synthesis

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15
Q

Consensus sequences

A

Promoter– 5’ to 3’ coding strand sequence

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16
Q

E. coli promoter consensus sequence

A

TTGACA —17+/- 1 — TATAAT

17
Q

Bacterial Transcription 4 steps

A
  1. promoter recognition
  2. transcription initiation
  3. chain elongation
  4. chain termination
18
Q

What initiates transcription?

A

Holoenzyme that binds tightly to form CLOSED PROMOTER COMPLEX and unwinds 14 bp of DNA= OPEN PROMOTER COMPLEX. Holoenzyme initiates RNA synthesis at +1 site

19
Q

What are the two transcription termination mechanisms in bacteria?

A
  1. Intrinsic termination
  2. Rho- dependent termination
20
Q

What is intrinsic termination?

A

** most bacterial termination occurs this way

Inverted repeat sequences in transcript (6-8 uracil’s) fold into a stem loop structure called a hairpin. Hydrogen bonds break between A-U releasing transcript and terminating the process of transcription

21
Q

What is Rho-dependent termination?

A

Rho protein binds to mRNA and brings separation of new mRNA and RNA polymerase. Rut site where Rho binds rich in cytosines. The Rho protein is activated by ATP