Review Cards - Microbiology Flashcards

1
Q

Biosafety levels - Level I - risk

A

minimal

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2
Q

Biosafety levels - Level I - types of agents

A

those not known to cause disease in healthy adults

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3
Q

Biosafety levels - Bacillus subtilis

A

Level I

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4
Q

Biosafety levels - Mycobacterium gordonae

A

Level I

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5
Q

Biosafety levels - soil microbes

A

Level I

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6
Q

Biosafety levels - Level I - precautions

A

-standard microbiological practices
-no special equipment

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7
Q

Biosafety levels - Level II - risk

A

moderate

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8
Q

Biosafety levels - Level II - types of agents

A

common human pathogens

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9
Q

Biosafety levels - Enterohemorrhagic E. coli

A

Level II

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10
Q

Biosafety levels - Salmonella

A

Level II

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11
Q

Biosafety levels - HIV

A

Level II

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12
Q

Biosafety levels - HBV

A

Level II

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13
Q

Biosafety levels - influenza

A

Level II

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14
Q

Biosafety levels - Level II - precautions

A

-biological safety cabinet (BSC) I or II
-PPE
-autoclave must be available
-limited access
-most micro labs fall in this category

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15
Q

Biosafety levels - Level III - risk

A

high

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16
Q

Biosafety levels - Level III - types of agents

A

those that may cause serious or lethal disease via inhalation.

-effective treatment available

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17
Q

Biosafety levels - Bacillus anthracis

A

Level III

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18
Q

Biosafety levels - Francisella

A

Level III

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19
Q

Biosafety levels - Brucella

A

Level III

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20
Q

Biosafety levels - Mycobacterium tuberculosis

A

Level III

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21
Q

Biosafety levels - Rickettsia rickettsii

A

Level III

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22
Q

Biosafety levels - Coxiella burnetii

A

Level III

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23
Q

Biosafety levels - mold stages of systemic fungi

A

Level III

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24
Q

Biosafety levels - Level III - precautions

A

-biological safety cabinet (BSC) I or II
-PPE
-autoclave must be available
-limited access
-negative air flow
-sealed windows

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25
Biosafety levels - Level IV - risk
extreme
26
Biosafety levels - Level IV - types of agents
those that pose a high risk of life-threatening disease -may be transmitted by aerosols -no vaccine or therapy
27
Biosafety levels - Ebola virus
Level IV
28
Biosafety levels - Lassa virus
Level IV
29
Biosafety levels - hemorrhagic fevers
Level IV
30
Biosafety levels - Level IV - precautions
-class III BSC -full-body, air-supplied positive pressure suit -independent unit with specialized ventilation & waste management to prevent release into environment
31
CDC Classification of Biological Agents - Category A - priority
highest
32
CDC Classification of Biological Agents - Category A - spread
easily disseminated or transmitted from person to person
33
CDC Classification of Biological Agents - Category A - impact
high mortality, potential for major public health impact
34
CDC Classification of Biological Agents - Category B - priority
2nd highest
35
CDC Classification of Biological Agents - Category B - spread
moderately easy to disseminate
36
CDC Classification of Biological Agents - Category B - impact
moderate illness, low death rate
37
CDC Classification of Biological Agents - Category C - priority
3rd highest
38
CDC Classification of Biological Agents - Category C - spread
could be engineered for mass dissemination
39
CDC Classification of Biological Agents - Category C - impact
high morbidity/mortality, major public health impact
40
CDC Classification of Biological Agents - *Bacillus anthracis*
Category A
41
CDC Classification of Biological Agents - *Yersinia pestis*
Category A
42
CDC Classification of Biological Agents - *Francisella tularensis*
Category A
43
CDC Classification of Biological Agents - *Clostridium botulinum* toxin
Category A
44
CDC Classification of Biological Agents - smallpox
Category A
45
CDC Classification of Biological Agents - hemorrhagic fever viruses (Ebola, Marburg, Lassa, Machupo)
Category A
46
CDC Classification of Biological Agents - *Brucella*
Category B
47
CDC Classification of Biological Agents - *Salmonella*
Category B
48
CDC Classification of Biological Agents - *Shigella*
Category B
49
CDC Classification of Biological Agents - *E.coli* 0157:H7
Category B
50
CDC Classification of Biological Agents - *Burkholderia mallei*
Category B
51
CDC Classification of Biological Agents - *Burkholderia pseudomallei*
Category B
52
CDC Classification of Biological Agents - *Chlamydia psittaci*
Category B
53
CDC Classification of Biological Agents - *Coxiella burnetii*
Category B
54
CDC Classification of Biological Agents - *Clostridium perfringens* toxin
Category B
55
CDC Classification of Biological Agents - ricin toxin
Category B
56
CDC Classification of Biological Agents - staphylococcal enterotoxin B
Category B
57
CDC Classification of Biological Agents - *Rickettsia prowazekii*
Category B
58
CDC Classification of Biological Agents - viral encephalitis viruses
Category B
59
CDC Classification of Biological Agents - *Vibrio cholerae*
Category B
60
CDC Classification of Biological Agents - *Cryptosporidium parvum*
Category B
61
CDC Classification of Biological Agents - Nipah virus
Category C
62
CDC Classification of Biological Agents - hantavirus
Category C
63
Biological Safety Cabinets - open front; unsterilized room air enters; air passes through high efficiency particulate air (HEPA) filter before being exhausted - class of BSC?
Class I
64
Biological Safety Cabinets - laminar flow cabinets with variable sash opening; air passes through 1 HEPA filter before reaching work surface & 2nd one before being exhausted - class of BSC?
Class II
65
Biological Safety Cabinets - completely enclosed; negative pressure; air is filter sterilized comin in & going out; gloves are attached to front - class of BSC?
Class III
66
Which class of BSC is most commonly used in hospital micro labs?
Class II
67
Which class of BSC provides minimal personnel protect and doesn't protect work surface?
Class I
68
Which class of BSC provides protection for the worker & work?
Class II
69
Which class of BSC provides maximum protection and is used in labs that work with extremely hazardous organisms?
Class III
70
Sterilization & Disinfection - Temperature - steam under pressure
-autoclave -most widely utilized in clinical labs -15 lb of pressure for 15 min (for media) -121*C/250*F -Kills spores -may not kill prions
71
Sterilization & Disinfection - Temperature - boiling
-not reliable -spores may not be killed
72
Sterilization & Disinfection - Temperature - pasteurization
-used in food industry to kill foodborne pathogens -doesn't sterilize -liquid is heated to 71.7*C for 15 minutes
73
Sterilization & Disinfection - Temperature - hot air sterilization
-used when steam may damage or fail to penetrate -2 hours at 170*C -kills spores
74
Sterilization & Disinfection - Temperature - incineration
-used to sterilize inoculating loops & biomedical wastes
75
Sterilization & Disinfection - Filtration
-used to sterilize liquids that are thermolabile (e.g., urea broth) -HEPA air filters are used in BSC
76
Sterilization & Disinfection - Radiation
UV light wavelengths in the 200-320 nm range are used for surface disinfection both in the lab and patient rooms
77
Sterilization & Disinfection - Chemicals - alcohols
-ethyl & isopropyl (70-80%) frequently used as antiseptics & disinfectant -does NOT kill spores
78
Sterilization & Disinfection - Chemicals - chlorine compounds
-sodium hypochlorite (household bleach) -one of the most effective agents against HIV & HBV -10% solution -CAN kill spores
79
Sterilization & Disinfection - Chemicals - Glutaraldehyde
-effective against most vegetative cells other than mycobacteria -used for cold sterilization of items damaged by heat, e.g., inhalation therapy equipment, equipment with optical lenses such as endoscopes
80
Sterilization & Disinfection - Chemicals - Hydrogen peroxide
3%-6% solution used as disinfectant
81
Sterilization & Disinfection - Chemicals - iodine & iodophors
-iodophors (e.g., providone-iodine) release iodine slowly & are less irritating & nonstaining -effective skin disinfectant -used with alcohol on skin prior to collection of blood for blood culture
82
Sterilization & Disinfection - Chemicals - Phenolic compounds
0.5%-3% solution for disinfecting -does NOT kill spores
83
Sterilization & Disinfection - Chemicals - Quaternary ammonium compounds
-effective against wide range of vegetative bacteria -NOT effective against spores, mycobacteria, or non-enveloped viruses -used to disinfect floors, walls, furniture
84
Sterilization & Disinfection - Gases - ethylene oxide
widely used in hospitals to sterilize materials that can't withstand steam
85
Anaerobes - preservative or transport device
Aspirates preferred to swabs. Anaerobic transport system to eliminate O2.
86
Anaerobes - storage temperature (unpreserved)
25*C **do not refrigerate**
87
CSF - preservative or transport device
None
88
CSF - storage temperature (unpreserved)
Storage not recommended, process immediately
89
*Neisseria gonorrhoeae* - preservative or transport device
Amies transport medium with charcoal, JEMBEC plates, Gono-Pak, BioBag (best to inoculate medium directly)
90
*Neisseria gonorrhoeae* - storage temperature (unpreserved)
25*C **don’t refrigerate**
91
Sputum - preservative or transport device
None
92
Sputum - storage temperature (unpreserved)
4*C
93
Stool for culture - preservative or transport device
Transport media - e.g., Cary-Blair transport medium (has high pH and sodium thioglycollate added) I’d specimen can’t be cultured within 2 hrs of collection
94
Stool for culture - storage temperature (unpreserved)
4*C -best to process without delay -refrigeration may kill *Shigella*
95
Stool for ova & parasites - preservative or transport device
Depending on procedures to be performed: polyvinyl alcohol (PVA), 10% formalin, sodium acetate-acetic acid-formalin (SAF), merthiolate-iodine-formalin (MIF), others without formaldehyde or mercury (e.g., Ecofix, Parasafe)
96
Stool for ova & parasites - storage temperature (unpreserved)
Can hold formed specimens at 4*C -soft or liquid specimens should be examined immediately or preserved
97
Urine - preservative or transport device
Transport tubes with boric acid-glycerol if specimen can’t be processed within 2 hrs of collection
98
Urine - storage temperature (unpreserved)
4*C for not more than 24 hrs
99
Viruses - preservative or transport device
Collect during acute phase of infection (2-3 days) -use viral transport medium (VTM)
100
Viruses - storage temperature (unpreserved)
4*C -for delay >24 hrs, freeze at -70*C
101
Criteria for rejection of specimens in microbiology - unlabeled or improperly labeled specimen - reject?
reject
102
Criteria for rejection of specimens in microbiology - improper collection site - reject?
reject
103
Criteria for rejection of specimens in microbiology - prolonged transit time (over 2 hrs without preservation) - reject?
reject
104
Criteria for rejection of specimens in microbiology - improper temperature during transport or storage - reject?
reject
105
Criteria for rejection of specimens in microbiology - leaking specimens - reject?
reject
106
Criteria for rejection of specimens in microbiology - specimens in non-sterile containers - reject?
reject
107
Criteria for rejection of specimens in microbiology - dry swab - reject?
reject
108
Criteria for rejection of specimens in microbiology - improper swab, e.g., wood or calcium alginate for viruses or *Chlamydia* - reject?
reject
109
Criteria for rejection of specimens in microbiology - syringes with needles attached - reject?
reject
110
Criteria for rejection of specimens in microbiology - culture for anaerobes requested on inappropriate sources or not received in anaerobic transport tube - reject?
reject
111
Criteria for rejection of specimens in microbiology - specimens received in formalin - reject?
reject
112
Criteria for rejection of specimens in microbiology - saliva instead of sputum - reject?
reject
113
Criteria for rejection of specimens in microbiology - foley catheter tip - reject?
reject
114
Criteria for rejection of specimens in microbiology - insufficient quantity - reject?
reject
115
Criteria for rejection of specimens in microbiology - formed stool for *C. difficile* toxin testing - reject?
reject
116
Criteria for rejection of specimens in microbiology - swab for acid-fast bacilli (AFB) or fungal smear and culture - reject?
reject
117
List organisms that frequently require special collection and processing.
1. Anaerobes 2. *Chlamydia* 3. *Haemophilus influenzae* 4. *Neisseria gonorrhoeae* 5. *Neisseria meningitidis* 6. *Salmonella* 7. *Shigella* 8. *Shigella* 9. *Streptococcus pneumoniae* 10. Viruses 11. Parasites
118
Gram stain - reagent - crystal violet: -Function? -Outcome?
Function: primary dye Outcome: stains all bacteria purple
119
Gram stain - reagent - Iodine: -Function? -Outcome?
Function: mordant Outcome: reacts with crystal violet to form a complex that incorporates into peptidoglycan
120
Gram stain - reagent - 95% ethyl alcohol or acetone or combination: -Function? -Outcome?
Function: decolorizer Outcome: removes crystal violet from gram-negative (neg) bacterial cells
121
Gram stain - reagent - Safranin: -Function? -Outcome?
Function: counterstain Outcome: stains gram-negative bacterial cells pink
122
Staining properties of gram-positive & gram negative bacteria - Gram Positive - cell wall
Thick peptidoglycan layer with teichoic acid & lipoteichoic acid. -teichoic acid cross-links prevent decolorization in Gram stain
123
Staining properties of gram-positive & gram negative bacteria - Gram Positive: Stained by? Color in gram stain?
Stained by crystal violet. Color in gram stain: purple
124
Staining properties of gram-positive & gram negative bacteria - Gram Negative - cell wall
Thin peptidoglycan layer covered with proteins, phospholipids, & lipopolysaccharides. -decolorizing agent causes increased permeability of lipid-rich cell wall -primary stain (crystal violet) washes out
125
Staining properties of gram-positive & gram negative bacteria - Gram Negative - cell wall
Thin peptidoglycan layer covered with proteins, phospholipids, & lipopolysaccharides. -decolorizing agent causes increased permeability of lipid-rich cell wall -primary stain (crystal violet) washes out
126
Staining properties of gram-positive & gram negative bacteria - Gram Negative: Stained by? Color in gram stain?
Stained by safranin. Color in gram stain: pink
127
Types of culture media - nutritive
-supports growth of most non-fastidious bacteria
128
Types of culture media - nutrient agar
nutritive
129
Type of culture media - trypticase soy agar
nutritive
130
Type of culture media - sheep blood agar (SBA)
enrichment
131
Type of culture media - chocolate agar (CHOC)
enrichment
132
Type of culture media - brain-heart infusion
enrichment
133
Type of culture media - buffered charcoal-yeast extract (BCYE) agar
enrichment
134
Type of culture media - Columbia colistin-nalidixic acid (CNA) agar
selective
135
Type of culture media - eosin methylene blue (EMB)
selective and differential
136
Type of culture media - MacConkey (MAC)
selective and differential
137
Type of culture media - Hektoen enteric (HE)
selective and differential
138
Type of culture media - xylose lysine deoxychocolate (XLD)
selective and differential
139
Type of culture media - Thayer-Martin
selective
140
Type of culture media - enrichment
-contains added growth factors, e.g., blood, vitamins, yeast extract
141
Type of culture media - selective
-contains additives such as dyes, bile salts, alcohols, acids, or antibiotics to inhibit growth of certain bacteria (e.g., gram pos)
142
Type of culture media - differential
-contains compounds that allow certain bacteria (or even species) to be visually differentiated (e.g., lactose fermentation, hydrogen sulfide [H2S], production)
143
Routine media for aerobes and facultative anaerobes - sheep blood agar (SBA) - type?
-enrichment -differential
144
Routine media for aerobes and facultative anaerobes - sheep blood agar (SBA) - for isolation of?
-most non-fastidious bacteria
145
Routine media for aerobes and facultative anaerobes - sheep blood agar (SBA): Composed of? Allow differentiation of?
tryptic soy agar with 5% sheep blood -allows differentiation of hemolysis
146
Routine media for aerobes and facultative anaerobes - chocolate agar (CHOC) - type?
enrichment
147
Routine media for aerobes and facultative anaerobes - chocolate agar (CHOC) - for isolation of?
fastidious organisms including *Haemophilus* & *Neisseria*
148
Routine media for aerobes and facultative anaerobes - chocolate agar (CHOC): Supplies what factors? Incubated?
supplies X (hemin) & V (NAD) factors -incubate in 5% CO2
149
Routine media for aerobes and facultative anaerobes - Columbia colistin-nalidixic acid (CNA) agar - type?
selective
150
Routine media for aerobes and facultative anaerobes - Columbia colistin-nalidixic acid (CNA) agar - for isolation of?
gram-positive cocci (GPC), especially from wound & stool culture
151
Routine media for aerobes and facultative anaerobes - Columbia colistin-nalidixic acid (CNA) agar - what does colistin & nalidixic acid do?
Colistin & nalidixic acid suppress most gram-negative (GN) -contains 5% sheep blood but should not be used to observe hemolytic reactions.
152
Routine media for aerobes and facultative anaerobes - Phenylethyl alcohol agar (PEA) - type?
selective
153
Routine media for aerobes and facultative anaerobes - Phenylethyl alcohol agar (PEA) - for isolation of?
gram-positive cocci (GPC) & anaerobic gram-negative rods (GNR)
154
Routine media for aerobes and facultative anaerobes - Phenylethyl alcohol agar (PEA) - what does phenylethyl alcohol do?
Phenylethyl alcohol inhibits enteric GNR -contains 5% sheep blood
155
Routine media for aerobes and facultative anaerobes - brain heart infusion agar - type?
enrichment & selective
156
Routine media for aerobes and facultative anaerobes - brain heart infusion agar - for isolation of?
fastidious and non-fastidious organisms (anaerobes included)
157
Routine media for aerobes and facultative anaerobes - brain heart infusion agar - useful for culturing?
useful for culturing streptococci, pneumococci, and meningococci
158
Routine media for aerobes and facultative anaerobes - brain heart infusion agar - what can be added to detect VRE?
vancomycin VRE = vancomycin-resistant enterococci
159
Routine media for aerobes and facultative anaerobes - eosin methylene blue (EMB) - type?
selective & differential
160
Routine media for aerobes and facultative anaerobes - eosin methylene blue (EMB) - for isolation of?
enteric gram negative rods (GNR)
161
Routine media for aerobes and facultative anaerobes - eosin methylene blue (EMB): Function of eosin and methylene blue? Lactose fermenters? E.coli? Non-lactose fermenter?
-eosin & methylene blue inhibit gram positive (GP) -LF = green-black or purple -E.coli = green metallic sheen -NLF = colorless or light purple
162
Routine media for aerobes and facultative anaerobes - MacConkey (MAC) agar - type?
selective & differential
163
Routine media for aerobes and facultative anaerobes - MacConkey (MAC) agar - for isolation of?
enteric gram negative rods (GNR)
164
Routine media for aerobes and facultative anaerobes - MacConkey (MAC) agar: -Function of bile salts & crystal violet? -Lactose fermenters? -Non-lactose fermenters?
-bile salts & crystal violet inhibits most GP -LF = pink -NLF = colorless
165
Routine media for aerobes and facultative anaerobes - Sorbitol MacConkey (SMAC) agar - type?
selective
166
Routine media for aerobes and facultative anaerobes - Sorbitol MacConkey (SMAC) agar - for isolation of?
*E. coli* 0157:H7
167
Routine media for aerobes and facultative anaerobes - Sorbitol MacConkey (SMAC) agar: -*E. coli* 0157:H7?
-Doesn't ferment sorbitol = colorless colonies -Some labs have stopped using because non-0157 serotypes can be pathogens
168
Routine media for aerobes and facultative anaerobes - Hektoen enteric (HE) - type?
selective & differential
169
Routine media for aerobes and facultative anaerobes - Hektoen enteric (HE) - for isolation of?
*Salmonella* & *Shigella* in stool
170
Routine media for aerobes and facultative anaerobes - Hektoen enteric (HE): -Function of bile salts, bromothymol blue, & acid fusion? -Nonpathogens? -Non-lactose fermenters? -H2S positive?
-Bile salts, bromothymol blue, & acid fuchsin inhibit normal GI flora -Nonpathogens = orange to salmon pink -NLF = green to blue-green -H2S pos colonies = black precipitate
171
Routine media for aerobes and facultative anaerobes - xylose lysine deoxycholate (XLD) - type?
selective & differential
172
Routine media for aerobes and facultative anaerobes - xylose lysine deoxycholate (XLD) - for isolation of?
*Salmonella* & *Shigella* in stool
173
Routine media for aerobes and facultative anaerobes - xylose lysine deoxycholate (XLD): -Function of deoxycholate? -4 types of colonies?
-Deoxycholate inhibits many GNR & GP -4 types of colonies: 1. yellow (e.g., *E. coli*) 2. yellow with black centers (e.g., some *Proteus* species) 3. colorless or red colonies (e.g., *Shigella*) 4. red colonies with black centers (e.g., *Salmonella*) -Some shigellae may be inhibited. -Some salmonellae may not produce H2S
174
Routine media for aerobes and facultative anaerobes - *Salmonella-Shigella* (SS) agar - type?
selective
175
Routine media for aerobes and facultative anaerobes - *Salmonella-Shigella* (SS) agar - for isolation of?
*Salmonella & Shigella* in stool
176
Routine media for aerobes and facultative anaerobes - *Salmonella-Shigella* (SS) agar: -Function of brilliant green & bile salts? -Ferment lactose? -Produce H2S (black center)?
-brilliant green & bile salts inhibit other enterics. -*Salmonella & Shigella* DO NOT ferment lactose - colorless colonies -*Salmonella* produces H2S (black center)
177
Routine media for aerobes and facultative anaerobes - Deoxycholate-citrate agar - type?
selective
178
Routine media for aerobes and facultative anaerobes - Deoxycholate-citrate agar - for isolation of?
*Salmonella* & *Shigella*
179
Routine media for aerobes and facultative anaerobes - Deoxycholate-citrate agar - inhibits?
other non-pathogenic enterics
180
Routine media for aerobes and facultative anaerobes - Thioglycolate medium - type?
enrichment
181
Routine media for aerobes and facultative anaerobes - Thioglycolate medium - for isolation of?
*Campylobacter* from stool, wound cultures
182
Routine media for aerobes and facultative anaerobes - Thioglycolate medium - subculture to?
Campy-selective agar after overnight incubation at 4*C
183
Routine media for aerobes and facultative anaerobes - *Campylobacter* blood agar (Campy BAP) - type?
Enrichment & selective
184
Routine media for aerobes and facultative anaerobes - *Campylobacter* blood agar (Campy BAP) - for isolation of?
*Campylobacter* from stool
185
Routine media for aerobes and facultative anaerobes - *Campylobacter* blood agar (Campy BAP) - incubation?
Incubate plates in 5% CO2 at 42*C
186
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - Modified Thayer-Martin (MTM) - composed of?
Vancomycin Colistin Nystatin Trimethoprim (TMP)
187
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - Modified Thayer-Martin (MTM) - function of Vancomycin, colistin, nystatin, and trimethoprim?
inhibit growth of normal genital flora -some *N. gonorrhoeae* may be inhibited
188
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - Modified Thayer-Martin (MTM) - incubation?
incubate in increased CO2
189
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - Martin-Lewis - similar to?
similar to Thayer-Martin, but different antibiotics - inhibits YEAST better
190
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - Martin-Lewis - incubation?
incubate in increased CO2
191
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - New York City medium (NYC) - incubation?
incubate in increased CO2
192
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - New York City medium (NYC) - inhibited? Growth?
Some *N. gonorrhoeae* are inhibited by antibiotics. Genital mycoplasmas will grow.
193
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - GC-LECT - antibiotics?
Contains antibiotics to inhibit gram positive & gram negative bacteria and yeast
194
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - JEMBEC plates - function?
For transportation & growth of *N. gonorrhoeae*
195
Selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis* - JEMBEC plates - contain?
Plates contain *Neisseria*-selective medium & come with resealable polyethylene bag & CO2-generating tablet. --NO need to transfer to a culture plate.
196
List the selective media for isolation of *Neisseria gonorrhoeae* and *Neisseria meningitidis*.
1. Modified Thayer-Martin (MTM) 2. Martin-Lewis 3. New York City medium (NYC) 4. GC-LECT 5. JEMBEC plates
197
Special bacteriologic media - Cystine-tellurite blood agar - use?
Differential medium for isolation of *Corynebacterium diphtheriae*
198
Special bacteriologic media - Cystine-tellurite blood agar - colonies on agar?
*C. diphtheriae* produces dark grey to black colonies.
199
Special bacteriologic media - Loeffler medium - use?
Enrichment medium for *C. diphtheriae*
200
Special bacteriologic media - Loeffler medium - function?
promotes development of metachromatic granules
201
Special bacteriologic media - Tindale agar - use?
selective differential medium for *C. diphtheriae*
202
Special bacteriologic media - Tindale agar - colonies?
*Corynebacterium* spp. produce gray to black colonies due to reduction of tellurite. -*C. diphtheriae* colonies are surrounded by a brown halo.
203
Special bacteriologic media - Bismuth sulfite agar: -selective for? -function of bismuth sulfite & brilliant green?
-selective for *Salmonella* -inhibits most others
204
Special bacteriologic media - Bismuth sulfite agar - *S. typhi* colonies?
*S. typhi* colonies are black, surrounded by metallic sheen. -others are light green -Some salmonellae may be inhibited
205
Special bacteriologic media - Cefsulodin-Irgasan-novobiocin (CIN) agar - use?
Selective medium for *Yersinia enterocolitica*, *Aeromonas*, & *Plesiomonas shigelloides*
206
Special bacteriologic media - Cefsulodin-Irgasan-novobiocin (CIN) agar: -Function of crystal violet? -Function of novobiocin? -Function of Cefsulodin?
-Crystal violet inhibits most gram negatives. -Novobiocin inhibits gram positive cocci -Cefsulodin inhibits most gram positives & gram negatives
207
Special bacteriologic media - Cefsulodin-Irgasan-novobiocin (CIN) agar - *Y. enterocolitica* colonies?
*Y. enterocolitica* ferments mannitol, appears as red "bull's-eye" colonies surrounded by colorless halo.
208
Special bacteriologic media - Alkaline peptone water (APW) - use?
Enrichment media for recovery of *Vibrio* from stool
209
Special bacteriologic media - Alkaline peptone water (APW): -Function of alkaline pH? -Subculture to?
-Alkaline pH suppresses commensals -Subcultured to thiosulfate citrate bile salts sucrose (TCBS)
210
Special bacteriologic media - Thiosulfate Citrate Bile Salts Sucrose (TCBS) agar - use?
Selective for *Vibrio*
211
Special bacteriologic media - Thiosulfate Citrate Bile Salts Sucrose (TCBS) agar - function of high pH?
inhibits most bacteria
212
Special bacteriologic media - Thiosulfate Citrate Bile Salts Sucrose (TCBS) agar: -*V. cholerae* colonies? -*V. parahaemolyticus* and *V. vulnificus* colonies?
-*V. cholerae* ferments sucrose, produces yellow colonies -*V. parahaemolyticus* & *V. vulnificus* DO NOT ferment sucrose; usually produce blue-green colonies
213
Special bacteriologic media - Bordet-Gengou agar - use?
Selective enrichment medium for isolation of *Bordetella pertussis*
214
Special bacteriologic media - Bordet-Gengou agar: -composed of? -function of methicillin?
-Potato-glycerol-based medium enriched with blood. -Contaminants inhibited by methicillin.
215
Special bacteriologic media - Bordet-Gengou agar - *Bordetella* colonies?
*Bordetella* colonies resemble mercury droplets.
216
Special bacteriologic media - Bordet-Gengou agar - what is the plate also known as?
"Cough plate."
217
Special bacteriologic media - Regan-Lowe agar - use?
Selective for *B. pertussis*
218
Special bacteriologic media - Regan-Lowe agar - composed of?
Charcoal agar supplemented with horse blood, cephalexin, & amphotericin B.
219
Special bacteriologic media - BYCE agar - use?
Enrichment medium for isolation of *Legionella*
220
Special bacteriologic media - BYCE agar: -Function of yeast extract & L-cysteine? -Function of charcoal?
-Yeast extract & L-cysteine enhance growth of *Legionella*. -Charcoal absorbs toxic compounds.
221
Special bacteriologic media - V agar - use?
Selective & differential for *G. vaginalis*
222
Special bacteriologic media - V agar - incubation?
Incubate in increased CO2 for 48 hours.
223
Special bacteriologic media - V agar - *G. vaginalis* colonies?
*G. vaginalis* colonies are beta hemolytic.
224
Special bacteriologic media - CHROMagar or chromID - use?
Detect emerging antibiotic-resistant pathogens such as extended-spectrum beta-lactamase (ESBL) - producing *E.coli*, methicillin-resistant *Staphylococcus aureus* (MRSA), and carbapenemase-producing *Enterobacteriaceae*
225
Special bacteriologic media - CHROMagar or chromID - function of chromogens?
Chromogens are released if specific enzymes produced by target organism are present.
226
Aerotolerance test - Aerobe: -blood agar incubated aerobically? -blood agar incubated anaerobically? -CHOC incubated in CO2 incubator?
-Growth -No growth -Growth
227
Aerotolerance test - Capnophilic aerobe: -blood agar incubated aerobically? -blood agar incubated anaerobically? -CHOC incubated in CO2 incubator?
-No growth -No growth -Growth
228
Aerotolerance test - Facultative anaerobe: -blood agar incubated aerobically? -blood agar incubated anaerobically? -CHOC incubated in CO2 incubator?
-Growth -Growth -Growth
229
Aerotolerance test - Obligate anaerobe: -blood agar incubated aerobically? -blood agar incubated anaerobically? -CHOC incubated in CO2 incubator?
-No growth -Growth -No growth
230
Aerotolerance test - Aerotolerant anaerobe: -blood agar incubated aerobically? -blood agar incubated anaerobically? -CHOC incubated in CO2 incubator?
-No growth -Growth -Growth
231
List the organisms requiring incubation in increased CO2.
1. *Campylobacter* (10-15% CO2) 2. *Haemophilus* (5-10% CO2) 3. *Helicobacter* (5-10% CO2) 4. *Moraxella catarrhalis* (5% CO2) 5. *Mycobacterium* (5-10% CO2) 6. Pathogenic *Neisseria* (5-10% CO2)
232
Hemolytic reactions on sheep blood agar - Alpha hemolysis: -description -explanation -examples
-green zone around colony; may be narrow or wide -partial lysis of RBCs -*Streptococcus pneumoniae* & viridans streptococci
233
Hemolytic reactions on sheep blood agar - Beta hemolysis: -description -explanation -examples
-clear zone around colony; may be narrow or wide -complete lysis of RBCs -Group A strep (GAS), group B strep (GBS), *Listeria monocytogenes*
234
Hemolytic reactions on sheep blood agar - Gamma (non-hemolytic): -description -explanation -examples
-no zone of hemolysis -no lysis of RBCs -*Enterococcus faecalis*
235
Staphylococcaceae - *Staphylococcus* spp. - gram stain
gram positive cocci - usually in clusters
236
Staphylococcaceae - *Staphylococcus* spp. - colonies of SBA
1-3 mm round smooth convex glistening opaque entire edge butyrous (butter-like)
237
Staphylococcaceae - *Staphylococcus* spp. - key characteristics
-catalase positive -fermentative -modified oxidase (microdase) negative -resistant to bacitracin -Matrix-assisted laser desorption ionization-time of flight (MALD-TOF) mass spectrometry routinely used for ID of isolates
238
Staphylococcaceae - *Staphylococcus* spp. - normal flora of?
skin mouth pharynx vagina urethra GI tract
239
Staphylococcaceae - *Staphylococcus* spp. - aerotolerance
facultative anaerobe
240
Staphylococcaceae - *Staphylococcus* spp. - growth on media
Grows on most non-selective media
241
Staphylococcaceae - *Staphylococcus* spp. - salt tolerance
salt tolerant
242
Staphylococcaceae - *S. aureus* - pathogenicity
Causes suppurative cutaneous infections, toxic shock syndrome, food poisoning
243
Staphylococcaceae - *S. aureus* - gram stain
gram positive cocci - usually in clusters
244
Staphylococcaceae - *S. aureus* - colonies on SBA
-most are beta hemolytic (small zone) -may be golden
245
Staphylococcaceae - *S. aureus* - key characteristics
-coagulase positive -ferments mannitol (yellow color with mannitol salt agar (MSA)) -usually DNase positive
246
Staphylococcaceae - *S. aureus* - penicillin
85-90% resistant to penicillin
247
Staphylococcaceae - *S. aureus* - MRSA
-strains are common -methicillin resistance is mediated by the mecA gene or its homologs and is the most important resistance mechanism
248
Which staphylococcaceae species is the second leading cause of health-care-associated infections, spread by direct contact with personnel and contaminated objects? A. *S. saprophyticus* B. *S. aureus* C. *S. epidermidis* D. *Micrococcus*
B. *S. aureus*
249
Staphylococcaceae - *S. epidermidis* - pathogenicity
-opportunistic pathogen -causes nosocomial infections due to contamination of inserted or implanted medical devices
250
Staphylococcaceae - *S. epidermidis* - gram stain
gram positive cocci - usually in clusters
251
Staphylococcaceae - *S. epidermidis* - colonies on SBA
-white to slightly yellow -usually non-hemolytic
252
Staphylococcaceae - *S. epidermidis* - key characteristics
-coagulase negative -grows on MSA but does NOT ferment mannitol -sensitive to novobiocin
253
Which staphylococcaceae is frequently recovered from blood cultures but not usually clinically significant in adults? A. *S. aureus* B. *S. epidermidis* C. *S. saprophyticus* D. *Micrococcus*
B. *S. epidermidis*
254
Staphylococcaceae - *S. saprophyticus* - pathogenicity
-UTI in young sexually active females -Urethritis & prostatitis in males
255
Staphylococcaceae - *S. saprophyticus* - gram stain
gram positive cocci - usually in clusters
256
Staphylococcaceae - *S. saprophyticus* - colonies on SBA
-white to slightly yellow -non-hemolytic
257
Staphylococcaceae - *S. saprophyticus* - key characteristics
-coagulase negative -resistant to novobiocin -may ferment mannitol
258
Which of the following characteristics can help differentiate between *S. epidermidis* and *S. saprophyticus*? A. coagulase B. mannitol fermentation C. novobiocin sensitivity D. none of the above
C. novobiocin sensitivity -*S. epidermidis* is sensitive to novobiocin -*S. saprophyticus* is resistant to novobiocin -*S. saprophyticus may or may not ferment mannitol; S. epidermidis does NOT ferment mannitol. -Both are coagulase negative
259
Staphylococcaceae - *S. saprophyticus* - when is novobiocin sensitivity performed?
Only when coagulase-negative staphylococci (CNS) are isolated from the urine of a female.
260
Staphylococcaceae - *Micrococcus* - pathogenicity
-usually non-pathogenic -found in environment and on skin & mucous membranes
261
Staphylococcaceae - *Micrococcus* - gram stain
Large gram positive cocci in pairs or tetrads (predominant arrangement)
262
Staphylococcaceae - *Micrococcus* - colonies on SBA
-often pigmented (bright yellow, orange, pink, tan) -high-domed colonies
263
Staphylococcaceae - *Micrococcus* - key characteristics
-catalase positive -coagulase negative -oxidative -Modified oxidase (microdase) positive -most urease positive -resistant to furazolidone & lysostaphin (in contrast to most staphylococci)
264
How would you differentiate *Micrococcus* from staphylococci? A. coagulase B. modified oxidase (microdase) C. All of the above D. None of the above
B. modified oxidase (microdase)
265
Staphylococcaceae - *Micrococcus* - aerotolerance
usually grow aerobically
266
Staphylococcaceae - *Micrococcus* - species in this genus
Micrococcus luteus Micrococcus lylae
267
List the tests used in the identification of staphylococci.
1. Catalase 2. Coagulase 3. Slide agglutination tests for *S. aureus* 4. MSA 5. Rapid latex and hemagglutinin assays 6. MALDI-TOF
268
Tests for identification of staphylococci - Catalase - principle
Enzyme catalase converts 3% hydrogen peroxide (H2O2) to oxygen & water. Immediate bubbling.
269
Tests for identification of staphylococci - Catalase - key reactions
Staphylococcus & micrococcus are catalase positive
270
Tests for identification of staphylococci - Catalase - bubbling
Bubbles after 20-30 seconds are NOT considered a positive reaction. Catalase from RBCs in blood agar may produce weak bubbles.
271
Tests for identification of staphylococci - Coagulase - principle
Enzyme coagulase causes coagulation (tube test) or agglutination (slide test) in plasma.
272
Tests for identification of staphylococci - Coagulase - key reactions
*S. aureus* is coagulase positive.
273
Tests for identification of staphylococci - Coagulase - slide test vs. tube test
Slide test is a screening test - detects bound coagulase (clumping factor). -If negative, a tube test should be performed - detects free coagulase. **Largely replaced by latex agglutination tests**
274
Tests for identification of staphylococci - Slide agglutination tests for *S. aureus* - principle
Agglutination of latex beads coated with fibrinogen & antibodies to protein A (protein in cell wall of *S. aureus*).
275
Tests for identification of staphylococci - Slide agglutination tests for *S. aureus* - key reactions
*S. aureus* positive
276
Tests for identification of staphylococci - Slide agglutination tests for *S. aureus* - reporting by labs
Most labs report positive organisms as *S. aureus*.
277
Tests for identification of staphylococci - Mannitol Salt agar (MSA) - principle
Fermentation of mannitol results in color change from pink to yellow.
278
Tests for identification of staphylococci - Mannitol Salt agar (MSA) - key reactions
*S. aureus* positive
279
Tests for identification of staphylococci - Mannitol Salt agar (MSA) - what component inhibits most organisms other than staph?
7.5% salt
280
Tests for identification of staphylococci - Mannitol Salt agar (MSA) - do all staph grow on MSA?
They all can grow on MSA.
281
Tests for identification of staphylococci - Mannitol Salt agar (MSA) - why is it rarely used for ID of *S. aureus* today?
because other species ferment mannitol
282
Tests for identification of staphylococci - Rapid latex and hemagglutination assays - principle
Latex agglutination slide-card tests to detect coagulase and/or protein A associated with *S. aureus* & MRSA
283
Tests for identification of staphylococci - Rapid latex and hemagglutination assays - key reactions
*S. aureus* positive
284
Tests for identification of staphylococci - Rapid latex and hemagglutination assays - sensitivity & specificity
High sensitivity but relatively low specificity. -May get false-positive with coagulase-negative staph.
285
Tests for identification of staphylococci - MALDI-TOF - principle
A type of mass spectrometry good for analyzing biomolecules like peptides, lipids, and saccharides.
286
Tests for identification of staphylococci - MALDI-TOF - key reactions
Rapid and specific ID of staphylococci and other catalase-positive cocci.
287
Tests for identification of staphylococci - MALDI-TOF - % of identification
ID of staphylococci at species levels is >97% but lower for coagulase-negative staph.
288
Streptococci - *Streptococcus* spp. - gram stain
Oval gram positive cocci in chains & pairs
289
Streptococci - *Streptococcus* spp. - colonies on SBA
-<1mm -white to gray -translucent or semi-opaque -variable hemolysis
290
Streptococci - *Streptococcus* spp. - key characteristics
Catalase negative -differentiates for staph
291
Streptococci - *Streptococcus* spp. - aerotolerance
Facultative anaerobes
292
Streptococci - *Streptococcus* spp. - growth media
-require enriched media -chaining best in broth cultures
293
Streptococci - Group A Strep (GAS) - pathogenicity
-causes 90% of strep infections -Strep sore throat -rheumatic fever -glomerulonephritis -scarlet fever -erysipelas -puerperal sepsis -impetigo
294
Streptococci - Group A Strep (GAS) - gram stain
oval gram positive cocci in chains
295
Streptococci - Group A Strep (GAS) - colonies on SBA
-pinpoint -grayish white -translucent -usually beta hemolytic (wide zone)
296
Streptococci - Group A Strep (GAS) - key characteristics
-sensitive to bacitracin -pyrrolidonyl aminopeptidase (PYR) positive
297
Streptococci - Group A Strep (GAS) - most common GAS?
*S. pyogenes*
298
Streptococci - Group A Strep (GAS) - hemolysis due to?
O2-stable streptolysin S & O2-labile streptolysin O.
299
Streptococci - Group A Strep (GAS) - definitive diagnosis
Immunoassay for Lancefield group A or MALDI-TOF
300
Streptococci - Group B Strep (GBS), *S. agalactiae* - pathogenicity
-normal flora of female genital tract -most common cause of neonatal septicemia & meningitis
301
Streptococci - Group B Strep (GBS), *S. agalactiae* - gram stain
oval gram positive cocci in chains
302
Streptococci - Group B Strep (GBS), *S. agalactiae* - colonies on SBA
-slightly larger than GAS -gray-white -narrow zone of diffuse beta hemolysis -may be non-hemolytic
303
Streptococci - Group B Strep (GBS), *S. agalactiae* - key characteristics
-resistant to bacitracin -sodium hippurate positive -CAMP positive
304
Streptococci - Group B Strep (GBS), *S. agalactiae* - pregnant women
Vaginal & rectal swabs collected from pregnant women at 35-37 weeks gestation
305
Streptococci - Group B Strep (GBS), *S. agalactiae* - growth media
Inoculated in selective broth, e.g., LIM, GBS broth
306
Streptococci - Group B Strep (GBS), *S. agalactiae* - test recommended for ID after culture enrichement?
Nucleic acid amplification tests (NAATs)
307
Streptococci - *Streptococcus pneumoniae* - pathogenicity
-colonizes upper respiratory tract of some children -most common cause of community acquired pneumonia -major cause of otitis media & meningitis in adults -infects sinuses and eyes
308
Streptococci - *Streptococcus pneumoniae* - gram stain
-football-shaped (lancet-shaped) gram positive cocci -usually in pairs -may be single or in short chains -frequently encapsulated
309
Streptococci - *Streptococcus pneumoniae* - colonies on SBA
-round -translucent -glistening -dome-shaped when young -central depression with age (umbilicate) due to autolysis -Alpha hemolytic -Encapsulated strains are mucoid
310
Streptococci - *Streptococcus pneumoniae* - key characteristics
-bile solubility positive -sensitive to optochin
311
Streptococci - *Streptococcus pneumoniae* - Lancefield group
None
312
Streptococci - *Streptococcus pneumoniae* - tests used for ID
MALDI-TOF can be used
313
Streptococci - Group C/G streptococci - *S. dysgalactiae* subsp *equisimilis* - pathogenicity
-normal flora of upper respiratory tract but can cause pharyngitis (throat infection)
314
Streptococci - Group C/G streptococci - *S. dysgalactiae* subsp *equisimilis* - gram stain
oval gram positive cocci in clusters & pairs
315
Streptococci - Group C/G streptococci - *S. dysgalactiae* subsp *equisimilis* - colonies on SBA
beta-hemolytic
316
Streptococci - Group C/G streptococci - *S. dysgalactiae* subsp *equisimilis* - key characteristics
-resistant to bacitracin -PYR positive
317
Streptococci - Group C/G streptococci - *S. dysgalactiae* subsp *equisimilis* - indistinguishable from?
Indistinguishable from pharyngitis caused by *S. pyogenes*.
318
Streptococci - Viridans streptococci (*S. mitis* group, *S. mutans* group, *S. salivarius* group, & *S. bovis* group) - pathogenicity
-normal in oral, respiratory, & GI mucosa -opportunistic pathogens -frequent cause of subacute bacterial endocarditis, bacteremia, sepsis, and abscesses.
319
Streptococci - Viridans streptococci (*S. mitis* group, *S. mutans* group, *S. salivarius* group, & *S. bovis* group) - gram stain
gram positive cocci in chains
320
Streptococci - Viridans streptococci (*S. mitis* group, *S. anginosus* group, *S. mutans* group, *S. salivarius* group, & *S. bovis* group) - colonies on SBA
-alpha hemolytic (*S. mitis* group) -non-hemolytic (*S. salivarius* and *S. bovis* group) -beta-hemolytic (*S. anginosus* group)
321
Streptococci - Viridans streptococci (*S. mitis* group, *S. mutans* group, *S. salivarius* group, & *S. bovis* group) - key characteristics
-*S. mutans* group - ferments sorbitol -Bile solubility negative -*S. bovis* is bile esculin positive
322
Enterococcus - *E. faecium* & *E. faecalis* - pathogenicity
-normal in mouth, GI tract, & male genital tract -causes nosocomial UTI, wound infections, endocarditis, & bacteremia
323
Enterococcus - *E. faecium* & *E. faecalis* - gram stain
oval gram positive cocci in pairs, chains
324
Enterococcus - *E. faecium* & *E. faecalis* - colonies on SBA
*E. faecium* - alpha or non-hemolytic -Some strains of *E. faecalis* may be beta-hemolytic
325
Enterococcus - *E. faecium* & *E. faecalis* - key characteristics
-catalase negative -hydrolyzes esculin -grows in 6.5% NaCl broth -PYR positive
326
Enterococcus - *E. faecium* & *E. faecalis* - what antibiotic is *E. faecalis* resistant to?
Vancomycin -VRE are a significant public health concern. -VRE fecal surveillance culture is often done for early detection
327
Enterococcus - *E. faecium* & *E. faecalis* - media used for ID of VRE
chromogenic agar
328
Lists the test used for the identification of beta-hemolytic streptococci.
1. Bacitracin disk 2. MALDI-TOF 3. PYR test 4. CAMP test 5. Hippurate hydrolysis 6. Slide agglutination tests
329
Tests for identification of beta-hemolytic streptococci - Bacitracin disk - principle
Zone of inhibition after overnight incubation = susceptibility to bacitracin
330
Tests for identification of beta-hemolytic streptococci - Bacitracin disk - key reactions
-Group A strep susceptible -Group B strep resistant
331
Tests for identification of beta-hemolytic streptococci - Bacitracin disk: -also known as? -media performed on? -no longer recommended - why? -replaced by?
-also known as A disk -performed on SBA -no longer recommended because some groups C & G are susceptible -replaced by PYR & serogrouping by latex agglutination
332
Tests for identification of beta-hemolytic streptococci - MALDI-TOF - principle
A type of mass spectrometry good for identifying biomolecules like peptides, lipids, and saccharides.
333
Tests for identification of beta-hemolytic streptococci - MALDI-TOF - key reactions
Reliable for *S. pyogenes*, *S. agalactiae*, & *S. pneumoniae*
334
Tests for identification of beta-hemolytic streptococci - PYR test - principle
If PYR is hydrolyzed = red color after addition of color developer
335
Tests for identification of beta-hemolytic streptococci - PYR test - key reactions
group A strep are positive
336
Tests for identification of beta-hemolytic streptococci - PYR test - more specific than what other test for group A strep?
bacitracin disk test
337
True or False. Group A strep is the only beta-hemolytic strep that is PYR positive.
True
338
Tests for identification of beta-hemolytic streptococci - CAMP test - principle
Group B strep produces extracellular protein that enhances hemolysis of beta-hemolytic *S. aureus* on SBA
339
Tests for identification of beta-hemolytic streptococci - CAMP test - key reactions
group B strep is positive
340
Tests for identification of beta-hemolytic streptococci - CAMP test - classic method
-unknown is streaked perpendicular to a streak of beta-lysin producing *S. aureus*. -incubated in ambient air overnight -FALSE POSITVE in CO2 -Arrowhead hemolysis - where inoculum lines meet -Disk containing beta-lysin can be used instead of *S. aureus*
341
Tests for identification of beta-hemolytic streptococci - CAMP test - rapid test
A drop of beta-lysin on colonies on SBA. -only requires 20 minute incubation
342
List the tests used for identification of beta-hemolytic streptococci.
1. Hippurate hydrolysis 2. Slide agglutination tests
343
Tests for identification of beta-hemolytic streptococci - Hippurate hydrolysis - principle
Organisms that produce hippuricase (hippurate hydrolase) hydrolyze sodium hippurate to benzoate & glycine.
344
Tests for identification of beta-hemolytic streptococci - Hippurate hydrolysis - key reactions
group B strep positive
345
Tests for identification of beta-hemolytic streptococci - Hippurate hydrolysis - alternative to?
Alternative to CAMP. -2 hr test available
346
Tests for identification of beta-hemolytic streptococci - Slide agglutination tests - principle
Latex particles coated with group-specific antibodies agglutinate in the presence of bacterial antigens.
347
Tests for identification of beta-hemolytic streptococci - Slide agglutination tests - key reactions
Organisms agglutinate in corresponding antisera
348
Tests for identification of beta-hemolytic streptococci - Slide agglutination tests - tests commercially available for rapid ID of?
groups A, B, C, D, F, G strep, & *S. pneumoniae*
349
List the tests used for identification of alpha-hemolytic streptococci.
1. Optochin disk 2. Bile solubility
350
Tests for identification of alpha-hemolytic streptococci - Optochin disk - principle
Zone of inhibition >=14 mm with 6-mm disk OR >=16 mm with 10-mm disk = susceptibility to optochin
351
Tests for identification of alpha-hemolytic streptococci - Optochin disk - key reactions
-*S. pneumoniae* susceptible -Viridans strep resistant
352
Tests for identification of alpha-hemolytic streptococci - Optochin disk: -also known as? -contains? -method?
-also known as P disk -contains ethylhydrocupreine hydrochloride -Method: Placed on lawn of inoculum on SBA. Plates incubated overnight in CO2. If zone of inhibin is <14 mm, ID organisms as *S. pneumoniae* only if bile soluble.
353
Tests for identification of alpha-hemolytic streptococci - Bile solubility - principle
Bile salts (e.g., sodium deoxycholate) causes lysis of some organisms
354
Tests for identification of alpha-hemolytic streptococci - Bile solubility - key reactions
*S. pneumoniae* positive
355
Tests for identification of alpha-hemolytic streptococci - Bile solubility - performed on? positive?
-can be performed in broth or on colony -POS = clearing of broth or disappearance of colony -results in 30 seconds or less
356
Antibiograms of gram-positive cocci - Methicillin-sensitive *Staphylococcus aureus* - susceptibility
-resistant to penicillin -susceptible to cephalosporin & vancomycin
357
Antibiograms of gram-positive cocci - Methicillin-sensitive *Staphylococcus aureus* - routine susceptibility testing?
yes
358
Antibiograms of gram-positive cocci - Methicillin-resistant *Staphylococcus aureus* (MRSA) - susceptibility
-resistant to all beta-lactams (penicillin, ampicillin, and cephalosporin)
359
Antibiograms of gram-positive cocci - Methicillin-resistant *Staphylococcus aureus* (MRSA) - routine susceptibility testing?
yes
360
Antibiograms of gram-positive cocci - Group A Strep (GAS) - susceptibility
-universally susceptible to penicillin, cephalosporins, vancomycin
361
Antibiograms of gram-positive cocci - Group A Strep (GAS) - routine susceptibility testing?
no
362
Antibiograms of gram-positive cocci - Group B Strep (GBS) - susceptibility
Susceptible to penicillin, cephalosporins, vancomycin
363
Antibiograms of gram-positive cocci - Group B Strep (GBS) - routine susceptibility testing?
variable - may be done when isolated from baby
364
Antibiograms of gram-positive cocci - *Streptococcus pneumoniae* - susceptibility
-increasingly resistant to penicillin -Susceptible to vancomycin
365
Antibiograms of gram-positive cocci - *Streptococcus pneumoniae* - routine susceptibility testing?
yes
366
Antibiograms of gram-positive cocci - Enterococcus - susceptibility
*E. faecium* -usually resistant to penicillin & several other commonly used antibiotics -most are susceptible to vancomycin *E. faecium -vancomycin resistant (VRE)
367
Antibiograms of gram-positive cocci - Enterococcus - routine susceptibility testing?
yes
368
Aerobic spore-forming gram-positive rods - *Bacillus* spp. - pathogenicity
usually contaminants
369
Aerobic spore-forming gram-positive rods - *Bacillus* spp. - gram stain
-large with square ends -may be in chains -oval, central to subterminal spores that aren't swollen -looks like bamboo -spores may not be seen in direct smear
370
Aerobic spore-forming gram-positive rods - *Bacillus* spp. - culture
-large spreading beta-hemolytic colonies with irregular edges (MEDUSA HEAD) -whitish gray -may be pigmented
371
Aerobic spore-forming gram-positive rods - *Bacillus* spp. - key characteristics
-catalase positive -most are motile
372
Aerobic spore-forming gram-positive rods - *Bacillus* spp. - what must be ruled out? how?
Must rule out *B. anthracis* -often done via PCR
373
Aerobic spore-forming gram-positive rods - *Bacillus anthracis* - pathogenicity
-one of the most highly pathogenic microorganisms -causes anthrax -contracted from contaminated hides, wool, meat
374
Aerobic spore-forming gram-positive rods - *Bacillus anthracis* - gram stain
-large with square ends -may be in chains -oval, central to subterminal spores that aren't swollen -looks like bamboo -spores may not be seen in direct smear
375
Aerobic spore-forming gram-positive rods - *Bacillus anthracis* - culture
-large -adherent -NON-HEMOLYTIC -flat to slightly convex -irregular border -GROUND GLASS appearance -comma shaped projections -stands up like BEATEN EGG WHITE when touched with loop
376
Aerobic spore-forming gram-positive rods - *Bacillus anthracis* - key characteristics
-NON-HEMOLYTIC (beta-hydrolysis rules out) -catalase positive -NON-MOTILE -capsules are seen in CSF & blood smears
377
Aerobic spore-forming gram-positive rods - *Bacillus anthracis* - antibotic susceptibility
Most strains are susceptible to penicillin.
378
Aerobic spore-forming gram-positive rods - *Bacillus cereus* - pathogenicity
-often environmental contaminant -can cause focal & systemic infections, food poisoning
379
Aerobic spore-forming gram-positive rods - *Bacillus cereus* - gram stain
-large with square ends -may be in chains -oval, central to subterminal spores that aren't swollen -looks like bamboo -spores may not be seen in direct smear
380
Aerobic spore-forming gram-positive rods - *Bacillus cereus* - culture
-large -adherent -HEMOLYTIC -flat to slightly convex -irregular border -GROUND GLASS appearance -comma shaped projections -stands up like BEATEN EGG WHITE when touched with loop
381
Aerobic spore-forming gram-positive rods - *Bacillus cereus* - key characteristics
-hemolytic -motile
382
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium* spp. - pathogenicity
-normal on skin & mucous membranes -opportunistic pathogen
383
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium* spp. - gram stain
-irregular -slightly curved -non-paralleled sides -CLUB-SHAPED ends -if taken from fluid, they can arrange in PALLISADES or clusters with angular V-shaped forms
384
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium* spp. - culture
-facultative anaerobes -grow on most media
385
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium* spp. - also known as?
DIPTHEROIDS - because they resemble *C. diphtheriae*
386
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium* spp. - key characteristics
-catalase positive -non-motile
387
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae* - pathogenicity
Diphtheria
388
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae* - gram stain
-irregular -slightly curved -non-paralleled sides -CLUB-SHAPED ends -if taken from fluid, they can arrange in PALLISADES or clusters with angular V-shaped forms
389
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae*- culture
-Tindale agar: gray-black colonies with brown halos -Cystine tellurite agar: black colonies
390
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae* - key characteristics
-catalase positive -non-motile -toxin producing
391
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae* - requirements for ID
-demonstration of toxin production PCR or MALDI-TOFF are used for ID but must be followed up with ELEK immunoprecipitation test to confrim toxin production
392
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium diphtheriae* - *Corynebacterium ulcerans*
-closely releated to *C. diphtheriae* -also contains the TOX gene and can cause diphtheriae
393
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium jeikeium* - pathogenicity
hospital-acquired pathogen
394
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium jeikeium* - gram stain
-irregular -slightly curved -non-paralleled sides -CLUB-SHAPED ends -if taken from fluid, they can arrange in PALLISADES or clusters with angular V-shaped forms
395
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium jeikeium* - culture
Same as other commensal corynebacteria
396
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium jeikeium* - key characteristics
-catalase positive -rapid sucrose urea (RSU) negative
397
Aerobic NON-spore-forming gram-positive rods - *Corynebacterium jeikeium* - antibiotic susceptibility
multidrug resistant (MDR)
398
Which diphtheroid is the most commonly isolated? A. *C. diphtheriae* B. *C. ulcerans* C. *C. jeikeium* D. None of the above
C. *C. jeikeium*
399
Aerobic NON-spore-forming gram-positive rods - *Listeria monocytogenes* - pathogenicity
-able to cross the placenta and can infect the fetus causing preterm labor and other complications resulting in fetal loss up to 24% -meningitis & septicemia in newborns & immunocompromised -food poisoning with mortality ranges up to 50%
400
Aerobic NON-spore-forming gram-positive rods - *Listeria monocytogenes* - gram stain
-parallel sides -rounded ends -coccobacillary -singles or short chain arrangement
401
Aerobic NON-spore-forming gram-positive rods - *Listeria monocytogenes* - culture
-tiny colonies with narrow zone of indistinct beta hemolysis -translucent, gray
402
Aerobic NON-spore-forming gram-positive rods - *Listeria monocytogenes* - key characteristics
-catalase positive -hippurate hydrolysis positive -esculin positive -CAMP positive (hemolysis looks like SHOVEL, not arrowhead) -TUMBLING motility on wet mount -UMBRELLA growth in motility agar at room temperature but not at 35*C.
403
Aerobic NON-spore-forming gram-positive rods - *Listeria monocytogenes*: -growth temp? -enrichment? -differentiation from group B strep? -differentiation from diphtheroids? -MALDI-TOF?
-grows from 0.5*C-45*C -cold enrichment may be used -catalase differentiates from group B strep -motility (tumbling) differentiates from diphtheroids (non-motile) -MALDI-TOF can be used for ID
404
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - pathogenicity
-immunocompetent: skin infection -immunocompromised: invasive pulmonary & disseminated infections
405
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - gram stain
-aerobic actinomycetes -fine branching filaments with fragmentation -often beaded
406
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - culture
-slow growing -SBA: --wrinkled --dry --crumbly --chalky white to orange-tan --beta hemolytic
407
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - key characteristics
-catalase positive -partially ACID FAST -SULFUR granules
408
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - frequently isolated species
*N. brasiliensis* *N. pseudobrasiliensis* *N. abscessus*
409
Aerobic NON-spore-forming gram-positive rods - *Nocardia* - reporting
*Nocardia* isolates may be identified and reported at "complex" or "group" level.
410
*Neisseria* & *Moraxella* - *Neisseria* spp. - gram stain
-gram negative DIPLOCOCCI (GNDC) OR single COFFEE-BEAN shaped
411
*Neisseria* & *Moraxella* - *Neisseria* spp. - culture
-aerobic OR facultative -pathogens are CAPNOPHILIC
412
*Neisseria* & *Moraxella* - *Neisseria* spp. - key characteristics
-catalase positive -oxidase positive
413
*Neisseria* & *Moraxella* - *Neisseria gonorrhoeae* - pathogenicity
-gonorrhea -salpingitis -ophthalmia of newborn
414
*Neisseria* & *Moraxella* - *Neisseria gonorrhoeae* - gram stain
-intracellular & extracellular GNDC --diagnostic in urethral discharge from symptomatic males --culture confirmation required for females
415
*Neisseria* & *Moraxella* - *Neisseria gonorrhoeae* - culture
-requires increased CO2 -usually does NOT grow on SBA -grows on CHOC & *Neisseria*-selective media -colonies are small, grayish white or tan -may look like mixed culture
416
*Neisseria* & *Moraxella* - *Neisseria gonorrhoeae* - key characteristics
-oxidase positive -carbohydrate utilization: GLUCOSE only
417
*Neisseria* & *Moraxella* - *Neisseria gonorrhoeae*: -susceptible to what conditions? -culture used for? -definitive ID? -NAATs?
-susceptible to drying & cold -culture used for presumptive ID -definitive ID: monoclonal antibodies -NAATs can be used on male urine specimens with high sensitivity but should NOT be used with oropharyngeal, rectal, ocular, or pediatric patients
418
*Neisseria* & *Moraxella* - *Neisseria meningitidis* - pathogenicity
-normal flora in upper respiratory tract -always pathogenic when recovered from usually sterile body fluids such as blood or CSF -common cause of meningitis in young adults
419
*Neisseria* & *Moraxella* - *Neisseria meningitidis* - gram stain
-intracellular & extracellular GNDC -a gram stain of CSF is required for all cases of suspected bacterial meningitis sent to the lab
420
*Neisseria* & *Moraxella* - *Neisseria meningitidis* - culture
-grows on SBA, CHOC, & *Neisseria*-selective media -colonies are grey, convex, glistening, & occasionally mucoid
421
*Neisseria* & *Moraxella* - *Neisseria meningitidis* - key characteristics
-carbohydrate utilization: GLUCOSE & MALTOSE -O-nitrophenyl-beta-D-galactopyranoside (ONPG) NEGATIVE
422
*Neisseria* & *Moraxella* - Commensal *Neisseria* spp. - pathogenicity
-normal in upper respiratory tract -rarely cause disease
423
*Neisseria* & *Moraxella* - Commensal *Neisseria* spp. - gram stain
GNDC
424
*Neisseria* & *Moraxella* - Commensal *Neisseria* spp. - culture
-grow on SBA & CHOC at RT -grow on nutrient agar at 35*C -some grow on *Neisseria*-selective media -DO NOT require increased CO2 -may be pigmented
425
*Neisseria* & *Moraxella* - Commensal *Neisseria* spp. - key characteristics
varies with species
426
*Neisseria* & *Moraxella* - Commensal *Neisseria* spp.: -speciation? -must differentiate from? -*N. lactamica*?
-not speciated if from respiratory tract -must differentiate from pathogenic *Neisseria* when isolated on selective media or from normally sterile body site -*N. lactamica* is easily confused with *N. meningitidis* but *N. lactamica* acidifies lactose in addition to glucose
427
*Neisseria* & *Moraxella* - *Moraxella catarrhalis* - pathogenicity
-normal in upper respiratory tract -causes respiratory infections in young, old, & immunocompromised -causes otitis media & sinusitis in children
428
*Neisseria* & *Moraxella* - *Moraxella catarrhalis* - gram stain
GNDC
429
*Neisseria* & *Moraxella* - *Moraxella catarrhalis* - culture
-grows on SBA & CHOC -some may grow at RT &/or on *Neisseria*-selective media -"HOCKEY PUCK colonies" - colonies can be pushed over agar surface with a loop
430
*Neisseria* & *Moraxella* - *Moraxella catarrhalis* - key characteristics
-catalase positive -oxidase positive -carbohydrate utilization: NEG for all sugars -ONPG negative -DNase positive -butyrate esterase positive
431
*Neisseria* & *Moraxella* - *Moraxella catarrhalis* - differentiation from *Neisseria* spp.
DNase & butyrate esterase differentiate from *Neisseria* spp.
432
Characteristics of Enterobacterales - gram stain
Non-spore-forming GNRs
433
Characteristics of Enterobacterales - gram stain
Non-spore-forming GNRs
434
Characteristics of Enterobacterales - growth characteristics
facultative anaerobes
435
Characteristics of Enterobacterales - colonies on SBA
most are large, dull, gray, non-hemolytic
436
Characteristics of Enterobacterales - colonies on MAC
-lactose fermenters = pink -non-lactose fermenters = colorless
437
Characteristics of Enterobacterales - Biochemicals
-ferment GLUCOSE -oxidase negative -most reduce nitrates to nitrites -most are catalase positive
438
List the biochemical tests used for identification of Enterobacterales. (14)
1. Oxidase 2. nitrate reduction 3. carbohydrate fermentation 4. ONPG 5. H2S production 6. Triple sugar iron (TSI) agar 7. Indole 8. Methyl red (MR) 9. Voges-Proskauer (VP) 10. Citrate 11. Urease 12. Phenylalanine deaminase (PD) 13. Decarboxylase reactions 14. motility
439
Biochemical tests for identification of Enterobacterales - oxidase - principle
tetramethyl-para-phenylenediamine dihydrochloride reacts with cytochrome C to produce a blue or purple color
440
Biochemical tests for identification of Enterobacterales - oxidase - interpretation
Positive = blue or purple color
441
Biochemical tests for identification of Enterobacterales - oxidase: -test used to differentiate? -false pos?
-good test to differentiate Enterobacterales from non-fermenters -false positive from iron-containing wire - use platinum or wooden stick
442
Biochemical tests for identification of Enterobacterales - nitrate reduction - principle
If organism reduces nitrates to nitrites, a RED color develops when sulfanic aicd & *N,N*-dimethyl-L-naphthylamine added
443
Biochemical tests for identification of Enterobacterales - nitrate reduction - interpretation
Positive = red, OR no color after addition of zinc dust
444
Biochemical tests for identification of Enterobacterales - nitrate reduction - zinc dust
If no color develops (red = pos), zinc dust is added. It reduces nitrates. -RED color AFTER zinc dust = presence of nitrates (NEG REACTION) -NO COLOR after zinc dust means nitrates reduces to N2 or NO2 (POS REACTION)
445
Biochemical tests for identification of Enterobacterales - carbohydrate fermentation - principle
when carbohydrate is fermented, acidic end products cause color change in pH indicator
446
Biochemical tests for identification of Enterobacterales - carbohydrate fermentation - interpretation
with phenol red indicator = change from red to yellow
447
Biochemical tests for identification of Enterobacterales - carbohydrate fermentation: -frequently tested carbohydrates? -all Enterobacterales ferment?
-frequently tested carbohydrates are glucose, lactose, sucrose, mannose, sorbitol, mannitol, xylose, adonitol, cellobiose, dulcitol, trehalose -All Enterobacterales ferment GLUCOSE
448
Biochemical tests for identification of Enterobacterales - ONPG - principle
ONPG is changed to orthonitrophenol by beta-galactosidase
449
Biochemical tests for identification of Enterobacterales - ONPG - interpretation
positive = yellow
450
Biochemical tests for identification of Enterobacterales - ONPG: -test for? -differentiation of?
-test for slow lactose fermentation -helpful in differentiating *Citrobacter* (positive) from most *Salmonella* (negative).
451
Biochemical tests for identification of Enterobacterales - H2S production - principle
-organisms that possess H2S-producing enzymes produce colorless H2S gas from sulfur containing compounds -H2S reacts with iron salt in medium to form black ferrous sulfide
452
Biochemical tests for identification of Enterobacterales - H2S production - interpretation
black precipitate
453
Biochemical tests for identification of Enterobacterales - H2S production: -sulfur-containing compounds? -differentiates?
-sulfur-containing compounds = sodium thiosulfate, cystine, methionine -good test to differentiate *Salmonella* (H2S positive) from *Shigella* (H2S negative).
454
Biochemical tests for identification of Enterobacterales - Triple sugar iron (TSI) agar - principle
sugar fermentation produces acid = changes color of pH indicator
455
Biochemical tests for identification of Enterobacterales - Triple sugar iron (TSI) agar - interpretation
Yellow = acid (A) Pink = alkaline (K) Pink butt = glucose NOT fermented Yellow butt = glucose fermented Pink slant = lactose/sucrose NOT fermented Yellow slant = lactose and/or sucrose fermented Black precipitate = H2S produced Bubbles = gas production
456
Biochemical tests for identification of Enterobacterales - Triple sugar iron (TSI) agar: -contains? -how to leave cap to tube? -record as? -Kligler iron agar (KIA)?
-contains 0.1% glucose, 1% lactose, 1% sucrose, phenol red, sodium thiosulfate, iron salt -leave cap slightly loose -record as slant/butt, e.g., K/A [some record NC = no change (for pink butt] -Kligler iron agar (KIA) is same except NO sucrose
457
Biochemical tests for identification of Enterobacterales - Indole - principle
-tryptophanase deaminates tryptophan = indole produced -Kovacs reagent (paradimethylaminobenzaldehyde) forms pink-colored complex with indole
458
Biochemical tests for identification of Enterobacterales - Indole - interpretation
positive = pink
459
Biochemical tests for identification of Enterobacterales - Indole - spot indole test
-commercially available -need source of tryptophan -use colonies from SBA or CHOC agar, not MAC -positive = blue -*E. coli* & *Proteus vulgaris* are positive
460
Biochemical tests for identification of Enterobacterales - methyl red (MR) - principle
-acid products formed when glucose is metabolized by mixed acid fermentation pathway -color changes pH indicator
461
Biochemical tests for identification of Enterobacterales - methyl red (MR) - interpretation
positive = red color after addition of MR (pH indicator)
462
Biochemical tests for identification of Enterobacterales - methyl red (MR) - pH at which test becomes positive?
4.5
463
Biochemical tests for identification of Enterobacterales - Voges-Proskauer (VP) - principle
acetoin is produced from alternate pathway for glucose metabolism
464
Biochemical tests for identification of Enterobacterales - Voges-Proskauer (VP) - interpretation
positive = red color when alphanaphthol & KOH added
465
Biochemical tests for identification of Enterobacterales - Voges-Proskauer (VP) - VP vs. MR
organisms that are VP positive are usually MR negative & vice versa
466
Biochemical tests for identification of Enterobacterales - Citrate - principle
if organism can use citrate as sole source of carbon, pH increases, and pH indicator changes color
467
Biochemical tests for identification of Enterobacterales - Citrate - interpretation
positive = green to blue, or growth
468
Biochemical tests for identification of Enterobacterales - Citrate - false negatives
false negative if cap is NOT loose
469
Biochemical tests for identification of Enterobacterales - Citrate - positive bacteria
*Klebsiella* & *Enterobacter* are positive
470
Biochemical tests for identification of Enterobacterales - Urease - principle
-urease breaks down to urea -ammonia released, pH increased, pH indicator changes color
471
Biochemical tests for identification of Enterobacterales - Urease - interpretation
positive = yellow to pink
472
Biochemical tests for identification of Enterobacterales - Urease - rapid urease producers
*Proteus* & *Morganella*
473
Biochemical tests for identification of Enterobacterales - Phenylalanine deaminase (PD) - principle
PD deaminates phenylalanine to phenylpyruvic acid, which reacts with ferric chloride to produce a green color.
474
Biochemical tests for identification of Enterobacterales - Phenylalanine deaminase (PD) - interpretation
positive = green color after addition of ferric chloride
475
Biochemical tests for identification of Enterobacterales - Phenylalanine deaminase (PD) - positive organisms
-*Proteus* -*Providencia* -*Morganella*
476
Biochemical tests for identification of Enterobacterales - Decarboxylase reactions - principle
if organism has enzyme to decarboxylate amino acid (e.g., ornithine, lysine, arginine), pH increases, pH indicator changes color -Ornithine decarboxylase (ODC)
477
Biochemical tests for identification of Enterobacterales - Decarboxylase reactions - interpretation
positive = yellow to purple
478
Biochemical tests for identification of Enterobacterales - Motility - interpretation
motile organisms grow away from stab line in motility medium
479
Biochemical tests for identification of Enterobacterales - Motility - interpretation
positive: -movement away from stab line OR -hazy appearance throughout medium after overnight incubation
480
Biochemical tests for identification of Enterobacterales - Motility - positive organisms
most Enterobacterales are positive, EXCEPT *Klebsiella* & *Shigella*
481
Biochemical tests for identification of Enterobacterales - Motility - differentiates?
Differentiates: -*Klebsiella* (neg) from *Enterobacter* (pos) AND -*Shigella* (neg) from *Salmonella* (pos)
482
Antigens of Enterobacterales - O antigen: -alternate name -location -characteristics -used for serological grouping of?
-somatic antigen -cell wall -lipopolysaccharide, heat stable -used for serological grouping of *Salmonella* & *Shigella*
483
Antigens of Enterobacterales - H antigen: -alternate name -location -characteristics -used to serotype?
-flagellar antigen -flagella -proteins, heat labile -used to serotype *Salmonella*
484
Antigens of Enterobacterales - K antigen: -alternate name -location -characteristics -role in preventing what? -Vi antigen
-capsular antigen -capsule -polysaccharide, heat labile, may mask O antigen; removed by heating -role in preventing phagocytosis = increased virulence -Vi antigen is K antigen produced by *S. typhi*
485
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - pathogenicity
-UTI -septicemia -neonatal sepsis -meningitis -diarrhea (some)
486
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - key reactions - POSITIVE
-lactose -gas -indole -MR -motility
487
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - key reactions - NEGATIVE
-H2S -VP -citrate -PD -urease
488
Which of the following is the predominant aerobe in the GI tract? A. *Shigella* B. *Salmonella* C. *E. coli* D. None of the above
C. *E. coli*
489
Which of the following is the most common cause of UTI? A. *E. coli* B. *Salmonella* C. *Shigella* D. None of the above
A. *E. coli*
490
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - EMB media
green metallic sheen
491
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - presumptive ID
-lactose positive -dry colony on MAC -oxidase negative -indole positive
492
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *E. coli* - *E. coli* 0157:H7
-does NOT ferment sorbitol -colorless colonies on SMAC
493
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - pathogenicity
-dysentery (shigellosis) -most communicable of bacterial diarrheas -found primarily in crowded or substandard conditions, e.g., day-care centers, jails, prisons
494
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - key reactions - POSITIVE
MR
495
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - key reactions - NEGATIVE
-lactose -gas -H2S -citrate -PD -urease -motility
496
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - what is found in the stool of patients positive for *Shigella*
-blood -mucus -neutrophils
497
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - most severe species?
*S. dysenteriae*
498
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - most common species in the US?
*S. sonnei*
499
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - serogrouped by what antigens?
O antigens
500
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - serogroups?
A, B, C, D
501
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Shigella* - closely related to what organism on a molecular basis?
*Escherichia*
502
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - pathogenicity
-Typhoid (enteric) fever -bacteremia -enterocolitis
503
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - key reactions - POSITIVE
-H2S -MR -motility -lysine decarboxylase (LDC)
504
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - key reactions - NEGATIVE
-lactose -indole -VP -PD -urease -ONPG
505
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - what type of meat is it found in?
poultry
506
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - may be transmitted by what type of animal?
reptiles
507
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - *S. typhi*
-Vi antigen -only trace H2S -citrate negative
508
*Escherichia*, *Shigella*, and *Salmonella* Enterobacterales - *Salmonella* - grouped by? serotyped by?
-grouped by O antigens (e.g., A, B, C) -serotyped by H antigens (e.g., 1, 2)
509
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - pathogenicity *also known as Shiga toxin-producing (STEC) OR verotoxin-producing (VTEC)
-diarrhea -hemorrhagic colitis -hemolytic uremic syndrome (HUS) -most common cause of renal failure in children in the US -may be fatal, especially in young or elderly
510
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - transmission
-undercooked meat -raw milk -apple cider
511
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - disease mechanism
toxins (verotoxins or Shiga toxins)
512
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - gram stain of stool
RBCs but usually no segmented neutrophils
513
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - *E. coli* 0157:H7
-most common isolate of group -pathogen most often isolated from bloody stools
514
Diarrheagenic *Escherichia coli* - Enterohemorrhagic (EHEC) - DNA probes
ID genes that code for toxins
515
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - pathogenicity
-traveler diarrhea -diarrhea in infants
516
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - transmission
contaminated food or water
517
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - disease mechanism
toxins
518
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - gram stain of stool
no segmented neutrophils or RBCs
519
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - type of stool
profuse, watery stool
520
Diarrheagenic *Escherichia coli* - Enterotoxigenic (ETEC) - DNA probes
detect toxins or toxin genes
521
Diarrheagenic *Escherichia coli* - Enteroinvasive (EIEC) - pathogenicity
-bloody diarrhea -dysentery-like -usually in young children in areas of poor sanitation
522
Diarrheagenic *Escherichia coli* - Enteroinvasive (EIEC) - transmission
contaminated food or water
523
Diarrheagenic *Escherichia coli* - Enteroinvasive (EIEC) - disease mechanism
invasiveness
524
Diarrheagenic *Escherichia coli* - Enteroinvasive (EIEC) - gram stain of stool
-segmented neutrophils -RBCs -mucus
525
Diarrheagenic *Escherichia coli* - Enteropathogenic (EPEC) - pathogenicity
-diarrhea in infants -major pathogen in infants in developing countries
526
Diarrheagenic *Escherichia coli* - Enteropathogenic (EPEC) - transmission
formula & food contaminated with fecal material
527
Diarrheagenic *Escherichia coli* - Enteropathogenic (EPEC) - disease mechanism
adherence-attachment
528
Diarrheagenic *Escherichia coli* - Enteropathogenic (EPEC) - gram stain of stool
no segmented neutrophils or RBCs
529
Diarrheagenic *Escherichia coli* - Enteropathogenic (EPEC) - type of stool
watery diarrhea with mucus
530
Diarrheagenic *Escherichia coli* - Enteroaggregative (EAEC) - pathogenicity
-diarrhea in developing countries -chronic diarrhea in HIV-infected patients
531
Diarrheagenic *Escherichia coli* - Enteroaggregative (EAEC) - transmission
nosocomial & community acquired
532
Diarrheagenic *Escherichia coli* - Enteroaggregative (EAEC) - disease transmission
adherence-attachment
533
Diarrheagenic *Escherichia coli* - Diffusely adherent (DAEC) - pathogenicity
-diarrhea & UTI -most common in children in developing countries
534
Diarrheagenic *Escherichia coli* - Diffusely adherent (DAEC) - transmission
little known about epidemiology
535
Diarrheagenic *Escherichia coli* - Diffusely adherent (DAEC) - disease mechanism
adherence-attachment
536
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - pathogenicity
-pneumonia -UTI -septicemia -Carbapenem-resistant -significant pathogen in both community and hospital settings
537
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - key reactions - POSITIVE
-lactose -gas -VP -citrate -urease (slow)
538
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - key reactions - NEGATIVE
-H2S -indole -MR -PD -motility -ODC
539
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - encapsulated?
yes
540
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - colonies on agar
colonies are usually mucoid
541
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - *K. oxytoca*
similar to *K. pneumoniae* EXCEPT indole positive
542
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella pneumoniae* - differentiation from *Enterobacter*
-motility -ODC
543
Klebsiella and other commonly isolated Enterobacterales - *Citrobacter* - pathogenicity
-nosocomial infections -UTI is most common site of infection
544
Klebsiella and other commonly isolated Enterobacterales - *Citrobacter* - key reactions - POSITIVE
-gas -H2S -MR -citrate -motility -ONPG
545
Klebsiella and other commonly isolated Enterobacterales - *Citrobacter* - key reactions - NEGATIVE
-VP -PD -LDC
546
Klebsiella and other commonly isolated Enterobacterales - *Citrobacter* - lactose?
lactose variable
547
Klebsiella and other commonly isolated Enterobacterales - *Citrobacter* - differentiation from *Salmonella*?
-ONPG -LDC
548
Klebsiella and other commonly isolated Enterobacterales - *Edwardsiella tarda* - pathogenicity
-opportunistic -can cause bacteremia, wound, and GI infections -environmental risk factors include exposure to brackish water or undercooked fish
549
Klebsiella and other commonly isolated Enterobacterales - *Edwardsiella tarda* - key reactions - POSITIVE
-gas -H2S -indole -MR -motility
550
Klebsiella and other commonly isolated Enterobacterales - *Edwardsiella tarda* - key reactions - NEGATIVE
-lactose -VP -citrate -PD -urease
551
Klebsiella and other commonly isolated Enterobacterales - *Edwardsiella tarda* - primarily what type of pathogen?
fish
552
Klebsiella and other commonly isolated Enterobacterales - *Edwardsiella tarda* - differentiation from *Salmonella*
positive indole
553
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella aerogenes* - pathogenicity
-opportunistic & nosocomial infections -UTI -respiratory tract infection (RTI) -wound infections
554
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella aerogenes* - key reactions - POSITIVE
-VP -ONPG -ODC -citrate -motility -gas
555
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella aerogenes* - key reactions - NEGATIVE
-H2S -indole -MR -PD
556
Klebsiella and other commonly isolated Enterobacterales - *Klebsiella aerogenes* - colonies on agar
colonies may be mucoid
557
Klebsiella and other commonly isolated Enterobacterales - *Enterobacter cloacae* - pathogenicity
-nosocomial infections from contaminated medical devices and instruments
558
Klebsiella and other commonly isolated Enterobacterales - *Enterobacter cloacae* - key reactions - POSITIVE
-ODC -VP -sucrose
559
Klebsiella and other commonly isolated Enterobacterales - *Enterobacter cloacae* - key reactions - NEGATIVE
-oxidase -H2S -indole
560
Klebsiella and other commonly isolated Enterobacterales - *Enterobacter cloacae* - antibiotic susceptibility
frequently antibiotic resistant (intrinsic and plasma-based)
561
Other commonly isolated Enterobacterales - *Serratia marcescens* - pathogenicity
-opportunistic pathogen -UTI (indwelling catheters) -ocular -GI tract in children
562
Other commonly isolated Enterobacterales - *Serratia marcescens* - key reactions - POSITIVE
-VP -citrate -motility
563
Other commonly isolated Enterobacterales - *Serratia marcescens* - key reactions - NEGATIVE
-lactose -H2S -indole -PD -urease
564
Other commonly isolated Enterobacterales - *Serratia marcescens* - pigment produced when incubated at RT
red pigment
565
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - pathogenicity
-UTI -wound infections -septicemia
566
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - key reactions - POSITIVE
-H2S -MR -PD -urease -motility
567
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - key reactions - NEGATIVE
-lactose
568
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - colonies on agar
-swarming -burned chocolate odor
569
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - indole
*P. mirabilis* - indole negative *P. vulgaris* - indole positive
570
Other commonly isolated Enterobacterales - *Proteus vulgaris* & *Proteus mirabilis* - *P. vulgaris* on TSI
A/A - because of sucrose fermentation
571
Other commonly isolated Enterobacterales - *Morganella morganii* - pathogenicity
-mainly nosocomial infections -UTI -wound infections
572
Other commonly isolated Enterobacterales - *Morganella morganii* - key reactions - POSITIVE
-indole -MR -PD -urease (weak) -motility -ODC
573
Other commonly isolated Enterobacterales - *Morganella morganii* - key reactions - NEGATIVE
-lactose -H2S -VP -citrate
574
Other commonly isolated Enterobacterales - *Providencia* - pathogenicity
-UTI -diarrhea
575
Other commonly isolated Enterobacterales - *Providencia* - key reactions - POSITIVE
-indole -MR -citrate -PD -motility
576
Other commonly isolated Enterobacterales - *Providencia* - key reactions - NEGATIVE
-lactose -H2S -VP
577
Other commonly isolated Enterobacterales - *Providencia* - urease
*P. rettgeri* is urease positive
578
Other commonly isolated Enterobacterales - *Providencia* - which species is most commonly isolated?
*P. stuartii*
579
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - pathogenicity
diarrhea
580
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - key reactions - POSITIVE
-MR -urease -ONDC
581
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - key reactions - NEGATIVE
-lactose -H2S -VP (variable) -citrate -PD
582
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - gram stain
-gram negative coccobacilli -bipolar staining
583
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - optimal temp for growth
25-30*C
584
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - motility
motile at 25*C but NOT 35*C
585
Other commonly isolated Enterobacterales - *Yersinia enterocolitica* - agar
-CIN agar is selective -incubate 48 hours -red "BULL'S EYE" colonies surrounded by colorless halo
586
What species of *Yersinia* causes plague?
*Y. pestis*
587
Summary of key reactions for Enterobacterales - lactose negative
-*Shigella* -*Edwardsiella* -*Salmonella* -*Citrobacter* (some) -*Serratia* -*Proteus* -*Morganella* -*Providencia* -*Yersinia*
588
Summary of key reactions for Enterobacterales - H2S positive
-*Edwardsiella* -*Salmonella* -*Citrobacter* -*Proteus*
589
Summary of key reactions for Enterobacterales - VP positive
-*Klebsiella* -*Enterobacter* -*Serratia*
590
Summary of key reactions for Enterobacterales - PD positive
-*Proteus* -*Morganella* -*Providencia* -*Klebsiella* (slow)
591
Summary of key reactions for Enterobacterales - Urease positive
-*Proteus* -*Morganella* -*Providencia rettgeri* -some species of *Citrobacter*
592
Summary of key reactions for Enterobacterales - nonmotile at 35*C
-*Shigella* -*Klebsiella* -*Yersinia* (motile at 22*C)
593
Appearance of Enterobacterales on selected media - *Escherichia coli* - TSI
A/A, gas
594
Appearance of Enterobacterales on selected media - *Escherichia coli* - MAC
flat, dry pink colony with darker pink halo
595
Appearance of Enterobacterales on selected media - *Escherichia coli* - HE
yellow
596
Appearance of Enterobacterales on selected media - *Escherichia coli* - XLD
yellow
597
Appearance of Enterobacterales on selected media - *Shigella* - TSI
K/A
598
Appearance of Enterobacterales on selected media - *Shigella* - MAC
colorless
599
Appearance of Enterobacterales on selected media - *Shigella* - HE
green
600
Appearance of Enterobacterales on selected media - *Shigella* - XLD
colorless
601
Appearance of Enterobacterales on selected media - *Edwardsiella* - TSI
K/A, gas, H2S
602
Appearance of Enterobacterales on selected media - *Edwardsiella* - MAC
colorless
603
Appearance of Enterobacterales on selected media - *Edwardsiella* - HE
colorless
604
Appearance of Enterobacterales on selected media - *Edwardsiella* - XLD
red, yellow, or colorless with or without black centers
605
Appearance of Enterobacterales on selected media - *Citrobacter* - TSI
A/A or K/A, gas, with or without H2S
606
Appearance of Enterobacterales on selected media - *Citrobacter* - MAC
-colorless at 24 hrs -may become pink at 48 hrs
607
Appearance of Enterobacterales on selected media - *Citrobacter* - HE
colorless
608
Appearance of Enterobacterales on selected media - *Citrobacter* - XLD
red, yellow, or colorless with or without black centers
609
Appearance of Enterobacterales on selected media - *Salmonella* - TSI
K/A, gas, H2S
610
Appearance of Enterobacterales on selected media - *Salmonella* - MAC
colorless
611
Appearance of Enterobacterales on selected media - *Salmonella* - HE
green
612
Appearance of Enterobacterales on selected media - *Salmonella* - XLD
red with black center
613
Appearance of Enterobacterales on selected media - *Klebsiella* - TSI
A/A, gas
614
Appearance of Enterobacterales on selected media - *Klebsiella* - MAC
pink, mucoid
615
Appearance of Enterobacterales on selected media - *Klebsiella* - HE
yellow
616
Appearance of Enterobacterales on selected media - *Klebsiella* - XLD
yellow
617
Appearance of Enterobacterales on selected media - *Enterobacter* - TSI
A/A, gas
618
Appearance of Enterobacterales on selected media - *Enterobacter* - MAC
pink, may be mucoid
619
Appearance of Enterobacterales on selected media - *Enterobacter* - HE
yellow
620
Appearance of Enterobacterales on selected media - *Enterobacter* - XLD
yellow
621
Appearance of Enterobacterales on selected media - *Serratia* - TSI
K/A
622
Appearance of Enterobacterales on selected media - *Serratia* - MAC
-colorless at first, turning pink -*S. marcescens* may have red pigment at RT
623
Appearance of Enterobacterales on selected media - *Serratia* - HE
colorless
624
Appearance of Enterobacterales on selected media - *Serratia* - XLD
yellow or colorless
625
Appearance of Enterobacterales on selected media - *Proteus* - TSI
-K/A (*P. mirabilis) -A/A (*P. vulgaris) -gas, H2S
626
Appearance of Enterobacterales on selected media - *Proteus* - MAC
colorless, may swarm
627
Appearance of Enterobacterales on selected media - *Proteus* - HE
colorless
628
Appearance of Enterobacterales on selected media - *Proteus* - XLD
yellow or colorless, with or without black centers
629
Appearance of Enterobacterales on selected media - *Morganella* - TSI
K/A, gas
630
Appearance of Enterobacterales on selected media - *Morganella* - MAC
colorless
631
Appearance of Enterobacterales on selected media - *Morganella* - HE
colorless
632
Appearance of Enterobacterales on selected media - *Morganella* - XLD
red or colorless
633
Appearance of Enterobacterales on selected media - *Providencia* - TSI
K/A
634
Appearance of Enterobacterales on selected media - *Providencia* - MAC
colorless
635
Appearance of Enterobacterales on selected media - *Providencia* - HE
colorless
636
Appearance of Enterobacterales on selected media - *Providencia* - XLD
yellow or colorless
637
Appearance of Enterobacterales on selected media - *Yersinia* - TSI
Yellow/orange
638
Appearance of Enterobacterales on selected media - *Yersinia* - MAC
colorless to peach
639
Appearance of Enterobacterales on selected media - *Yersinia* - HE
salmon
640
Appearance of Enterobacterales on selected media - *Yersinia* - XLD
yellow or colorless
641
Characteristics of non-fermenting gram-negative rods - aerotolerance
obligate aerobes
642
Characteristics of non-fermenting gram-negative rods - TSI
K/K - they do NOT ferment carbohydrates
643
Characteristics of non-fermenting gram-negative rods - oxidizer/non-oxidizer
may be oxidizers or non-oxidizers (asaccharolytic)
644
Characteristics of non-fermenting gram-negative rods - oxidation-fermentation (OF) medium
either open tube pos/closed tube neg (oxidizer) OR open tube neg/closed tube neg (non-oxidizer)
645
Characteristics of non-fermenting gram-negative rods - SBA & CHOC
grow in 24-48 hours
646
Characteristics of non-fermenting gram-negative rods - MAC
appear as non-lactose-fermenters
647
Characteristics of non-fermenting gram-negative rods - oxidase
-most are oxidase positive -differentiates from Enterobacterales
648
Characteristics of non-fermenting gram-negative rods - antibiotic susceptibility
resistant to a variety of antibiotics
649
Commonly isolated non-fermenting gram-negative rods - *Pseudomonas aeruginosa* - pathogenicity
-usually not normal flora-important cause of nosocomial infections, e.g., burn, wound, RTI, UTI, bacteremia -causes SWIMMER'S EAR & contact lens KERATITIS -predominant respiratory pathogen in patients with CYSTIC FIBROSIS
650
Commonly isolated non-fermenting gram-negative rods - *Pseudomonas aeruginosa* - gram stain
-long, thin, pale-staining GNR -slightly pointed or rounded ends
651
Commonly isolated non-fermenting gram-negative rods - *Pseudomonas aeruginosa* - culture
SBA: -flat spreading colonies -usually beta hemolytic -dull gray or blue-green -METALLIC SHEEN Grows on MAC & EMB (lactose neg)
652
Commonly isolated non-fermenting gram-negative rods - *Pseudomonas aeruginosa* - key characteristics
-oxidase positive -catalase positive -motile -grows at 42*C -GRAPE-LIKE odor -only non-fermenter to produce PYOCYANIN (4% don't) -also produces pyoverdin (fluorescent pigment) -resistant to many antibiotics
653
Commonly isolated non-fermenting gram-negative rods - *Acinetobacter* spp. - pathogenicity
-part of normal flora of skin, pharynx in some -opportunistic pathogen -nosocomial infections, e.g., UTI, pneumonia, septicemia, meningitis -2nd to *P. aeruginosa* in frequency -most common = *A. baumannii*
654
Commonly isolated non-fermenting gram-negative rods - *Acinetobacter* spp. - gram stain
-pleomorphic gram-negative coccobacilli (GNCB) in singles, pairs, short chains -can be confused with *N. gonorrhoeae*, *Moraxella* -may retain crystal violet in broths & direct smears & be confused with GPC
655
Commonly isolated non-fermenting gram-negative rods - *Acinetobacter* spp. - culture
-can grow on most media, including MAC -some produce purplish colonies (might be mistaken for lactose fermenter)
656
Commonly isolated non-fermenting gram-negative rods - *Acinetobacter* spp. - key characteristics
-oxidase negative (differentiates from *N. gonorrhoeae*) -catalase positive -non-motile -resistant to many antibiotics
657
Commonly isolated non-fermenting gram-negative rods - *Stenotrophomonas maltophilia* - pathogenicity
-NOT part of normal flora -common cause of wound infections from agricultural machinery -colonizes immunocompromised patients -common in hospital -nosocomial infections, e.g., pneumonia
658
Commonly isolated non-fermenting gram-negative rods - *Stenotrophomonas maltophilia* - gram stain
straight or slightly curved slender GNR in singles or pairs
659
Commonly isolated non-fermenting gram-negative rods - *Stenotrophomonas maltophilia* - culture
SBA: -large, non-hemolytic -may be light yellow -agar may have lavender-green discoloration in areas of heavy growth Grows on MAC
660
Commonly isolated non-fermenting gram-negative rods - *Stenotrophomonas maltophilia* - key characteristics
-most often oxidase negative -catalase positive -motile -rapid oxidation of maltose -weaker oxidation of glucose -AMMONIA odor -resistant to many antibiotics -disk diffusion can give false results -broth dilution recommended
661
*Campylobacter* & *Helicobacter* - *Campylobacter jenuni* - pathogenicity
-most common cause of bacterial diarrhea -sources of infection: chickens, raw milk, pets
662
*Campylobacter* & *Helicobacter* - *Campylobacter jenuni* - gram stain
-curved, slender, gram negative rods -“GULL WING-shaped” -loose spirals -S shaped -stain faintly
663
*Campylobacter* & *Helicobacter* - *Campylobacter jenuni* - culture
-microaerophilic & capnophilic -grow on CAMPY-BAP at 42*C in increased CO2 (can grow at 37*C; normal enteric flora inhibited by 42*C incubation) -slow growing - hold plate 3 days -NAATs can be used for faster ID
664
*Campylobacter* & *Helicobacter* - *Campylobacter jenuni* - key characteristics
-DARTING CORKSCREW motility -oxidase positive -catalase positive -hippurate hydrolysis positive
665
*Campylobacter* & *Helicobacter* - *Campylobacter coli* - pathogenicity
-similar to *C. jejuni*, but less severe -usually foodborne
666
*Campylobacter* & *Helicobacter* - *Campylobacter coli* - gram stain
-curved, slender GNR -“GULL WING-shaped” -loose spirals -S shaped -stain faintly
667
*Campylobacter* & *Helicobacter* - *Campylobacter coli* - culture
-microaerophilic & capnophilic -grow on CAMPY-BAP at 42*C in increased CO2 (can grow at 37*C; normal enteric flora inhibited by 42*C incubation) -slow growing - hold plate 3 days -NAATs can be used for faster ID
668
*Campylobacter* & *Helicobacter* - *Campylobacter coli* - key characteristics
-hippurate hydrolysis NEGATIVE -a MALDI-TOF can be used to differentiate from *C.jejunu*
669
*Campylobacter* & *Helicobacter* - *Campylobacter fetus* - pathogenicity
-causes bacteremia in immunocompromised & elderly -uncommon stool isolate
670
*Campylobacter* & *Helicobacter* - *Campylobacter fetus*- gram stain
-curved, slender, gram negative rods -“GULL WING-shaped” -loose spirals -S shaped -stain faintly
671
*Campylobacter* & *Helicobacter* - *Campylobacter fetus*- culture
-most often isolated in blood cultures -hold for 2 weeks -inhibited on Campy agar -grows on routine media at 37*C but NOT at 42*C
672
*Campylobacter* & *Helicobacter* - *Campylobacter fetus* - key characteristics
-oxidase positive -catalase positive -hippurate hydrolysis NEGATIVE
673
*Campylobacter* & *Helicobacter* - *Helicobacter pylori* - pathogenicity
-gastritis -duodenal & peptic ulcers -possible risk factor for gastric carcinoma
674
*Campylobacter* & *Helicobacter* - *Helicobacter pylori* - gram stain
-curved, slender, GNR
675
*Campylobacter* & *Helicobacter* - *Helicobacter pylori* - culture
-grows on non-selective media incubated at 37*C in same atmosphere as Campy -does NOT grow at 42*C -slow growing
676
*Campylobacter* & *Helicobacter* - *Helicobacter pylori* - key characteristics
-rarely cultured -rapid urease tests on gastric biopsy, urea breath test, histology, PCR, serology, and ELISA all can be used for ID
677
*Vibrio* and related organisms - *Vibrio cholerae* - pathogenicity
-Cholera (acute diarrhea, dehydration, electrolyte imbalance) -transmitted by contaminated water, seafood -uncommon in the US, but may be seen in coastal areas
678
*Vibrio* and related organisms - *Vibrio cholerae* - gram stain
-small, COMMA-shaped GNR in direct smears -straight pleomorphic GNR in culture
679
*Vibrio* and related organisms - *Vibrio cholerae* - culture
-non-halophilic (doesn’t require NaCl for growth) -grows on SBA, CHOC, MAC (NLF) -large yellow colonies on TCBS (ferments sucrose) -alkaline peptone water can be used for enrichment
680
*Vibrio* and related organisms - *Vibrio cholerae* - key characteristics
-“RICE WATER” stools -oxidase positive -serological ID with anti sera to O ag. -01 & 0139 strains cause epidemics -01 strains are divided into 2 serotypes (Inaba and Ogawa) and 2 biotypes (El Tor and classical)
681
*Vibrio* and related organisms - *Vibrio vulnificus* - pathogenicity
-2nd most serious type of vibrio infection -causes primary septicemia and wound infections most often following consumption of raw oysters -patients usually have preexisting conditions such as liver disease or immunosuppression -seen in the US
682
*Vibrio* and related organisms - *Vibrio vulnificus* - gram stain
Straight or curved GNR
683
*Vibrio* and related organisms - *Vibrio vulnificus* - culture
-HALOPHILIC (salt-loving, requires addition of sodium) -most are green on TCBS; some are yellow -May look like enteric on MAC because some are lactose positive
684
*Vibrio* and related organisms - *Vibrio vulnificus* - key characteristics
-oxidase positive -motile
685
*Vibrio* and related organisms - *Vibrio parahaemolyticus* - pathogenicity
-most common cause of bacterial foodborne intestinal infection in Asia -contaminated seafood -water-associated wound infections -seen in US
686
*Vibrio* and related organisms - *Vibrio parahaemolyticus* - gram stain
straight or curved GNR
687
*Vibrio* and related organisms - *Vibrio parahaemolyticus* - culture
-requires 1% NaCl for growth -grows on SBA, MAC (NLF) -blue-green colonies on TCBS (doesn’t ferment sucrose)
688
*Vibrio* and related organisms - *Vibrio parahaemolyticus* - key characteristics
-oxidase positive -motile
689
*Vibrio* and related organisms - *Aeromonas* spp. - pathogenicity
-gastroenteritis & wound infections, often related to aquatic exposure -septicemia -meningitis
690
*Vibrio* and related organisms - *Aeromonas* spp. - gram stain
straight or curved GNR with rounded ends
691
*Vibrio* and related organisms - *Aeromonas* spp. - culture
-grows on routine media -most are beta-hemolytic on SBA -NLF on MAC -does NOT grow on TCBS -CIN agar & APW can be used for selective isolation
692
*Vibrio* and related organisms - *Aeromonas* spp. - key characteristics
-oxidase positive -motile -NAATs and MALDI-TOF can be used for ID
693
*Vibrio* and related organisms - *Plesiomonas shigelloides* - pathogenicity
-gastroenteritis from contaminated water or seafood -bacteremia & meningitis in immunocompromised & neonates
694
*Vibrio* and related organisms - *Plesiomonas shigelloides* - gram stain
pleomorphic GNR in singles, pairs, short chains, or long filaments
695
*Vibrio* and related organisms - *Plesiomonas shigelloides* - culture
-grows on SBA, CHOC -most grow on MAC, appear as NLF -does NOT arrow on TCBS
696
*Vibrio* and related organisms - *Plesiomonas shigelloides* - key characteristics
-biochemical & antigenic similarities to *Shigella* -oxidase positive -motile
697
*Haemophilus* - *H. influenzae* - pathogenicity
-normal flora of upper respiratory tract -causes: sinusitis, otitis media, pneumonia, bronchitis, often in elderly & immunocompromised -type b - common cause of pneumonia & meningitis in children where Hib vaccine not available
698
*Haemophilus* - *H. influenzae* - gram stain
-small, pleomorphic GNCB to long filaments -capsules may be seen
699
*Haemophilus* - *H. influenzae* - culture
-grows on CHOC in 5-10% CO2 -medium for optimum recovery should contain at least 10 mcg/mL of free X and V factors -translucent, moist, tannish colonies -encapsulated strains form larger & more mucoid colonies -MOUSY or BLEACH-like odor -may demonstrate SATELLITISM with staph on SBA
700
*Haemophilus* - *H. influenzae*: -porphyrin & porphobilinogen -NAATs
-porphyrin & porphobilinogen negative -NAATs can be used to detect from CSF, plasma, serum, and whole blood
701
*Haemophilus* - *H. influenzae* biotype *aegyptius* & *H. aegyptius* - pathogenicity
-both cause conjunctivitis (pink eye) -*H. influenzae* biotype *aegyptius* also causes Brazilian purpuric fever
702
*Haemophilus* - *H. influenzae* biotype *aegyptius* & *H. aegyptius* - gram stain
-small, pleomorphic GNCB to long filaments -capsules may be seen
703
*Haemophilus* - *H. influenzae* biotype *aegyptius* & *H. aegyptius* - culture
-grows on CHOC in 5-10% CO2 -medium for optimum recovery should contain at least 10 mcg/mL of free X and V factors -translucent, moist, tannish colonies -encapsulated strains form larger & more mucoid colonies -MOUSY or BLEACH-like odor -may demonstrate SATELLITISM with staph on SBA
704
*Haemophilus* - *H. influenzae* biotype *aegyptius* & *H. aegyptius*: -characteristics are similar to?
-characteristics are similar to *H. influenzae* -difficult to differentiate unless molecular methods are employed
705
*Haemophilus* - *H. parainfluenzae*, *H. haemolyticus*, & *H. parahaemolyticus* - pathogenicity
-normal flora of upper respiratory tract -low incidence of pathogenicity
706
*Haemophilus* - *H. parainfluenzae*, *H. haemolyticus*, & *H. parahaemolyticus* - gram stain
small, pleomorphic GNCB to long filaments
707
*Haemophilus* - *H. parainfluenzae*, *H. haemolyticus*, & *H. parahaemolyticus* - culture
colonies are larger, dry, & tannish
708
*Haemophilus* - *H. parainfluenzae*, *H. haemolyticus*, & *H. parahaemolyticus* - which species is porphyrin positive?
*H. parainfluenzae*
709
*Haemophilus* - *H. ducreyi* - pathogenicity
-NEVER normal flora -causes chancroid (STD) -rare
710
*Haemophilus* - *H. ducreyi* - gram stain
-small GNCB -bipolar staining -may resemble SCHOOL OF FISH or RAILROAD TRACKS
711
*Haemophilus* - *H. ducreyi* - culture
difficult to culture without the use of many growth factors in the media (can identify by PCR)
712
Speciation of *Haemophilus* - *H. influenzae* & *H. aegyptius*: -requires X factor (hemin)? -requires V factor (NAD)? -hemolysis on rabbit or horse blood agar/ -porphyrin/delta-aminolevulinic acid (ALA)?
-X factor? YES -V factor? YES -hemolysis? NO -porphyrin/delta-ALA? NO
713
Speciation of *Haemophilus* - *H. parainfluenzae*: -requires X factor (hemin)? -requires V factor (NAD)? -hemolysis on rabbit or horse blood agar/ -porphyrin/delta-aminolevulinic acid (ALA)?
-X factor? NO -V factor? YES -hemolysis? NO -porphyrin/delta-ALA? YES
714
Speciation of *Haemophilus* - *H. haemolyticus*: -requires X factor (hemin)? -requires V factor (NAD)? -hemolysis on rabbit or horse blood agar/ -porphyrin/delta-aminolevulinic acid (ALA)?
-X factor? YES -V factor? YES -hemolysis? YES -porphyrin/delta-ALA? NO
715
Speciation of *Haemophilus* - *H. parahaemolyticus*: -requires X factor (hemin)? -requires V factor (NAD)? -hemolysis on rabbit or horse blood agar/ -porphyrin/delta-aminolevulinic acid (ALA)?
-X factor? NO -V factor? YES -hemolysis? YES -porphyrin/delta-ALA? YES
716
Speciation of *Haemophilus* - *H. parahaemolyticus*: -requires X factor (hemin)? -requires V factor (NAD)? -hemolysis on rabbit or horse blood agar/ -porphyrin/delta-aminolevulinic acid (ALA)?
-X factor? YES -V factor? NO -hemolysis? NO -porphyrin/delta-ALA? NO
717
Misc. gram-negative rods - *Bartonella* - pathogenicity
-trench fever -relapsing fever -bacteremia -endocarditis -CAT-SCRATCH disease
718
Misc. gram-negative rods - *Bartonella* - gram stain
gram-negative pleomorphic rods
719
Misc. gram-negative rods - *Bartonella* - culture
-not practical -takes 9-40 days to grow -requires heme for growth
720
Misc. gram-negative rods - *Bartonella* - key characteristics
-identify by nucleic acid technique
721
Misc. gram-negative rods - *Bordetella pertussis* - pathogenicity
-whooping cough in children and adults -DTaP vaccine is available
722
Misc. gram-negative rods - *Bordetella pertussis* - gram stain
small GNCB
723
Misc. gram-negative rods - *Bordetella pertussis* - culture
grows on Bordet-Gengou & Regan-Lowe (charcoal, horse's blood) after 3-7 days
724
Misc. gram-negative rods - *Bordetella pertussis* - key characteristics
MALDI-TOF or agglutination with specific antibodies for ID
725
Misc. gram-negative rods - *Brucella* - pathogenicity
-Brucellosis (undulent fever) -from unpasteurized milk or contact with infected goats, cows, hogs, dogs
726
Misc. gram-negative rods - *Brucella* - gram stain
tiny, faintly staining GNCB
727
Misc. gram-negative rods - *Brucella* - culture
-most often isolated from blood cultures or biopsies of reticuloendothelial (RE) tissue -blood cultures incubated in increased CO2 for 3 weeks -culture is not sensitive
728
Misc. gram-negative rods - *Brucella* - key characteristics
-oxidase positive -catalase positive -urease positive -potential bioterrorism agent -reportable disease -slide agglutination test with specific antibodies used for ID
729
Misc. gram-negative rods - *Francisella* - pathogenicity
-Tularemia (rabbit fever) -human infected by tick or handling infected animal
730
Misc. gram-negative rods - *Francisella* - gram stain
-pale staining, small, pleomorphic, INTRACELLULAR GNCB with bipolar staining
731
Misc. gram-negative rods - *Francisella* - culture
-grows on special media enriched with glucose & cystine (e.g., blood cystine glucose agar), Thayer-Martin (TM), & BCYE -small, transparent colonies after 3 days
732
Misc. gram-negative rods - *Francisella* - key characteristics
-level 3 pathogen -direct fluorescent antibody methods for ID -send to public health lab for confirmation
733
Misc. gram-negative rods - *Gardnerella* - pathogenicity
-normal flora of female genital tract -associated with bacterial vaginosis (BV) when it & anaerobic GNR are predominant & *Lactobacillus* is absent -linked to maternal & neonatal infections, bacteremia, rarely UTI
734
Misc. gram-negative rods - *Gardnerella* - gram stain
small, pleomorphic gram-variable rods
735
Misc. gram-negative rods - *Gardnerella* - culture
-not recommended for diagnosis of BV -grows on SBA, PEA, CNA, human blood Tween (HBT) agar, V agar -produces diffuse beta hemolysis only on media containing human blood -requires increased CO2 & 48-72 hour incubation
736
Misc. gram-negative rods - *Gardnerella* - key characteristics
-catalase negative -oxidase negative -tests for Dx of BV: CLUE CELLS (vaginal epithelial cells covered with gram-variable rods), whiff test (10% KOH added to vaginal secretion => fish-like odor)
737
Misc. gram-negative rods - *Legionella* - pathogenicity
-Legionnaire disease -Pontiac fever -found in water (e.g., air conditioners, shower-heads, whirlpools) -contracted by inhalation of aerosol
738
Misc. gram-negative rods - *Legionella* - gram stain
small, pleomorphic, weakly staining GNR (sometimes filamentous)
739
Misc. gram-negative rods - *Legionella* - culture
-grows on BCYE in 3-4 days -pale yellow-green fluorescence with WOOL LAMP
740
Misc. gram-negative rods - *Legionella* - key characteristics
-oxidase positive -ID by immunofluorescent stain or agglutination methods -MALDI-TOF can also be used
741
Misc. gram-negative rods - *Pasteurella multicoda* - pathogenicity
-contracted by bite or scratch of cat or dog or contact with infected carcass -wound & soft tissue infection
742
Misc. gram-negative rods - *Pasteurella multicoda* - gram stain
pleomorphic GNCB with bipolar staining
743
Misc. gram-negative rods - *Pasteurella multicoda* - culture
-grows on SBA & CHOC, but NOT MAC -MUSTY odor
744
Misc. gram-negative rods - *Pasteurella multicoda* - key characteristics
-oxidase positive -catalase positive -indole positive -weak oxidase reaction after 30 minutes of being characteristic of *Pasteurella* -MALDI-TOF can also be used for ID
745
Specimens for anaerobic culture - bile - acceptable or unacceptable?
Acceptable
746
Specimens for anaerobic culture - blood - acceptable or unacceptable?
Acceptable
747
Specimens for anaerobic culture - body fluids - acceptable or unacceptable?
Acceptable
748
Specimens for anaerobic culture - bone marrow - acceptable or unacceptable?
Acceptable
749
Specimens for anaerobic culture - percutaneous lung aspirate or biopsy - acceptable or unacceptable?
Acceptable
750
Specimens for anaerobic culture - suprapubic bladder aspirates - acceptable or unacceptable?
Acceptable
751
Specimens for anaerobic culture - tissue - acceptable or unacceptable?
Acceptable
752
Specimens for anaerobic culture - transtracheal aspirate - acceptable or unacceptable?
Acceptable
753
Specimens for anaerobic culture - wound - acceptable or unacceptable?
Acceptable
754
Specimens for anaerobic culture - expectorated sputum - acceptable or unacceptable?
Unacceptable
755
Specimens for anaerobic culture - feces - acceptable or unacceptable?
Unacceptable
756
Specimens for anaerobic culture - gastric juice - acceptable or unacceptable?
Unacceptable
757
Specimens for anaerobic culture - swabs - acceptable or unacceptable?
Unacceptable
758
Specimens for anaerobic culture - voided or catheterized urine - acceptable or unacceptable?
Unacceptable
759
Specimens for anaerobic culture - bronchial washings (unless obtained with double lumen plugged catheter) - acceptable or unacceptable?
Unacceptable
760
Media for culture of anaerobes - Anaerobic blood agar-CDC - use? contains?
-non-selective enrichment medium that grows obligate & facultative anaerobes -contains yeast extract, L-cysteine, hemin, & vitamin K
761
Media for culture of anaerobes - *Bacteroides* bile-esculin (BBE) agar - use? contains? function? *B. fragilis* colonies?
-selective differential medium for *Baceteroides fragilis* -bile salts & gentamicin act as inhibitors -*B. fragilis* colonies are black with dark halos due to esculin hydrolysis
762
Media for culture of anaerobes - *Brucella* blood agar - use?
enrichment medium that grows obligate & facultative anaerobes
763
Media for culture of anaerobes - CNA blood agar - use?
selective medium that grows obligate anaerobes & GP facultative anaerobes
764
Media for culture of anaerobes - Cycloserine cefoxitin fructose egg yolk (CCFA) agar - use? colonies? fluorescence?
-selective & differential for *Clostridium difficile* -*C. diff* colonies are yellow due to fermentation of fructose -Chartreuse fluorescence
765
Media for culture of anaerobes - Egg-yolk agar (EYA) - use?
-for determination of lecithinase & lipase production by clostridia & fusobacteria
766
Media for culture of anaerobes - Kanamycin-vancomycin laked blood (KVLB) agar - use? also known as?
-selective medium for isolation of anaerobic GNRs, especially *Bacteroides* & *Prevotella* -also known as laked blood kanamycin-vancomycin (LKV) agar
767
Media for culture of anaerobes - PEA agar - use?
-selective medium: —inhibits enteric GNRs —grows obligate anaerobes & GP facultative anaerobes
768
Media for culture of anaerobes - Thioglycolate (THIO) broth - use? function? growth? storage? requirements before use?
-all-purpose medium that supports growth of most aerobes & anaerobes; can be used as backup broth to detect organisms present in small numbers or anaerobes -THIO acts as a reducing agent -Growth: —aerobes grow at the top —strict anaerobes grow at the bottom —facultative anaerobes grow throughout -store at RT -boil & cool before use
769
Methods to identify anaerobes - gram stain - how does it help ID? GN anaerobes & safranin? GP anaerobes?
-gram reaction; morphology; presence, location, & shape of spores -some GN anaerobes stain faintly with safranin; extend time of counter staining to 3-5 minutes or use 0.1% basic fuchsin -some GP anaerobes, e.g., *Clostridium*, May stain pink
770
Methods to identify anaerobes - growth on media - how it helps ID
-which media organism grows on -pigmentation -hemolysis -colony morphology
771
Methods to identify anaerobes - special-potency antimicrobial disks - how does it help ID
-kanamycin, vancomycin, & colistin disks help differentiate anaerobes & ensure that over-decolorized *Clostridium* is not misidentified as GNR -the disk is placed on the first quadrant of the plate; after incubation , observe if organism is susceptible or resistant
772
Methods to identify anaerobes - rapid tests - how do they help ID
-presumptive ID, e.g., fluorescence; catalase; spot indole; urease; motility; sodium polyanethanol sulfonate (SPS), nitrate, & bile disks; lecithinase, lipase, & proteolytic reaction on EYA
773
Methods to identify anaerobes - conventional tubes biochemicals
-test tubes containing variety of media inoculated & incubated in anaerobic environment -reaction leads to change in pH -expensive & time consuming -largely replaced by multitest systems
774
Methods to identify anaerobes - preformed enzyme-based systems
-detect preexisting enzymes -panels or cards are inoculated & incubated in room air -color changes are read in 4 hours -code number obtained & ID determined from code book -only contains codes for most commonly isolated anaerobes
775
Methods to identify anaerobes - gas-liquid chromatography (GLC)
-analysis of metabolic end products or cellular fatty acids -not frequently used
776
Methods to identify anaerobes - 16S ribosomal RNA gene sequencing
-DNA extracted from organism, amplified by PCR, sequenced on automated sequencer -nucleotide sequence compared with known sequences in database
777
Methods to identify anaerobes - MALDI-TOF
-extremely sensitive method requiring little sample volume for ID -the mass spectra generated are compared to known databases
778
Anaerobic gram-positive cocci - *Finegoldia magna* (formerly *Peptostreptococcus magnus*) - pathogenicity
-normal flora on skin & in mouth, intestines, female genital tract -most commonly isolated & most pathogenic anaerobic GPC -associated with skin infections, decubitus ulcers, septic arthritis, bone infection following orthopedic surgery, oral & female genital tract infections, bacteremia
779
Anaerobic gram-positive cocci - *Finegoldia magna* (formerly *Peptostreptococcus magnus*) - gram stain
-GPC in singles, pairs, retreads, clusters -resembles staph
780
Anaerobic gram-positive cocci - *Finegoldia magna* (formerly *Peptostreptococcus magnus*) - characteristics
-small colonies -May take 48 hours to grow -catalase negative -indole negative -resistant to SPS
781
Anaerobic gram-positive cocci - *Peptostreptococcus anaerobius* - pathogenicity
-normal flora on skin& mouth, GI, & genitourinary (GU) tracts -mixed infections of skin, soft tissues, GI tract, female genital tract, bones, joints, lungs, brain
782
Anaerobic gram-positive cocci - *Peptostreptococcus anaerobius* - gram stain
-tiny GPC in chains -resembles strep
783
Anaerobic gram-positive cocci - *Peptostreptococcus anaerobius* - characteristics
-small gray-white colonies in 24-48 hours -SWEET odor -sensitive to SPS
784
Anaerobic gram-positive cocci - *Peptoniphilus asaccharolyticus* (formerly *Peptostreptococcus assaccharolyticus) - pathogenicity
-normal on skin & in GI & GU tracts -associated with obstetric & gynecological infections
785
Anaerobic gram-positive cocci - *Peptoniphilus asaccharolyticus* (formerly *Peptostreptococcus assaccharolyticus) - characteristics
-yellow colonies -MUSTY odor -resistant to SPS -indole positive
786
Anaerobic gram-positive cocci - *Peptoniphilus asaccharolyticus* (formerly *Peptostreptococcus assaccharolyticus) - gram stain
-GPC in pairs, short chains, tetrads, clusters -some strains decolorize easily and can be confused with gram-negative anaerobes
787
Anaerobic gram-positive rods - *Actinomyces* - pathogenicity
-normal inhabitants of mucosal surfaces throughout the body -infects brain, face, lungs, genitals
788
Anaerobic gram-positive rods - *Actinomyces* - gram stain
-short or long gram-positive rods (GPR) -branched or unbranched -BANDED appearance -can break into club-shaped rods resembling diphtheroids
789
Anaerobic gram-positive rods - *Actinomyces* - characteristics
-sulfur granules may be seen in discharge -crush & stain to reveal characteristic gram-stain morphology -“MOLAR TOOTH” colonies
790
Anaerobic gram-positive rods - *Clostridium botulinum * - pathogenicity
-botulism due to ingestion of toxin in inadequately cooked or improperly canned foods -infant botulism due to ingestion of spores in honey -wound botulism from injection drug use
791
Anaerobic gram-positive rods - *Clostridium botulinum * - gram stain
-GPR with oval subterminal spores
792
Anaerobic gram-positive rods - *Clostridium botulinum * - characteristics
-reportable disease -toxin testing at public health labs
793
Anaerobic gram-positive rods - *Clostridioides difficile* - pathogenicity
-antibiotic-associated diarrhea -pseudomembranous colitis
794
Anaerobic gram-positive rods - *Clostridioides difficile* - gram stain
-thin GPR -May form chains -rare oval subterminal spores
795
Anaerobic gram-positive rods - *Clostridioides difficile* - characteristics
-yellow GROUND GLASS colonies on CCFA -usually not cultured -must demonstrate toxin production -toxins A & B -tissue culture molecular methods or enzyme immunoassay (EIA) to confirm
796
Anaerobic gram-positive rods - *Clostridium perfringens* - pathogenicity
-normal in GI tract -causes gas gangrene -most common bacterial cause in US -can produce more than 16 different toxins and is classified by toxinotype
797
Anaerobic gram-positive rods - *Clostridium perfringens* - gram stain
-large GPR with BLUNT ends in chains -“BOX CARS” -tendency to stain gram negative -usually no spores seen
798
Anaerobic gram-positive rods - *Clostridium perfringens* - characteristics
-most commonly isolated *Clostridium* -double zone of beta hemolysis on SBA
799
Anaerobic gram-positive rods - *Clostridium tetani* - pathogenicity
-causes tetanus -deep wounds infected with soil
800
Anaerobic gram-positive rods - *Clostridium tetani* - gram stain
-GPR with swollen terminal spores -“DRUMSTICK” -“TENNIS RACQUET” -becomes gram-negative after 24 hours
801
Anaerobic gram-positive rods - *Clostridium tetani* - characteristics
-rare in US because of DTap vaccine but common worldwide -lab confirmation rarely required
802
Anaerobic gram-positive rods - *Cutibacterium* (formerly *Propionibacterium*) - pathogenicity
-normal skin flora -common contaminant of blood cultures -causes acne -infections associated with artificial joints, cathethers, shunts, artificial heart valves -keratitis -bacteremia -endocarditis
803
Anaerobic gram-positive rods - *Cutibacterium* (formerly *Propionibacterium*) - gram stain
-CLUB-shaped, pleomorphic GPR -diphtheroid-like
804
Anaerobic gram-positive rods - *Cutibacterium* (formerly *Propionibacterium*) - characteristics
-most common anaerobic GPR -catalase positive -indole positive
805
Anaerobic gram-positive rods - *Lactobacillus* - pathogenicity
-normal in mouth, GI tract -predominant & beneficial flora of vagina during reproductive years -produces lactic acid, maintains vaginal pH -absence in vagina predisposes to BV & yeast infections -rare cause of endocarditis, septicemia in immunocompromised -
806
Anaerobic gram-positive rods - *Lactobacillus* - gram stain
-pleomorphic, long, thin, non-spore-forming GPR, often in chains -chains of rods in THIO
807
Anaerobic gram-positive rods - *Lactobacillus* - characteristics
-aerotolerant anaerobes -grow better under anaerobic conditions -colonies vary greatly -may resemble *S. viridans* -catalase negative
808
Gram-negative anaerobes - GNC - *Veillonella* - pathogenicity
-normal flora of upper respiratory tract, GI & GU tracts -usually in mixed culture -can cause infections in immunocompromised
809
Gram-negative anaerobes - GNC - *Veillonella* - gram stain
-tiny GNDC in pairs, clusters, short chains -can resemble *Neisseria*
810
Gram-negative anaerobes - GNC - *Veillonella* - characteristics
-may show weak red fluorescence under UV light -does NOT grow on KVLB -usually doesn't reduce nitrates
811
Gram-negative anaerobes - GNR - *Bacteroides fragilis* - pathogenicity
-main anaerobic organism recovered from intraabdominal infections -also causes endocarditis -more virulent and antibiotic resistant than most other anaerobes
812
Gram-negative anaerobes - GNR - *Bacteroides fragilis* - gram stain
pleomorphic, pale, irregularly staining GNR
813
Gram-negative anaerobes - GNR - *Bacteroides fragilis* - characteristics
-resistant to bile -hydrolyzes esculin -turns BBE brown
814
Gram-negative anaerobes - GNR - *Fusobacterium* - pathogenicity
-pulmonary infections -brain abscesses -oral lesions
815
Gram-negative anaerobes - GNR - *Fusobacterium* - gram stain
-GNR -*F. nucleatum* is long & thin with tapered ends (SPINDLE-shaped)
816
Gram-negative anaerobes - GNR - *Fusobacterium* - characteristics
-indole positive -most fluoresce CHARTREUSE (green-yellow) under UV light
817
Gram-negative anaerobes - GNR - *Porphyromonas* - pathogenicity
head, neck, & pleuropulmonary infections
818
Gram-negative anaerobes - GNR - *Porphyromonas* - gram stain
GNCB
819
Gram-negative anaerobes - GNR - *Porphyromonas* - characteristics
-slow growing -brown to black on SBA -some fluoresce brick-red to orange under UV light -doesn't grow on KVLB
820
Gram-negative anaerobes - GNR - *Prevotella* - pathogenicity
head, neck, & pleuropulmonary infections
821
Gram-negative anaerobes - GNR - *Prevotella* - gram stain
GNCB
822
Gram-negative anaerobes - GNR - *Prevotella* - characteristics
-slow growing -some are pigmented -brown to black on SBA & KVLB -some fluoresce brick-red to orange under UV light -doesn't grow on BBE
823
Laboratory ID of Mycobacteria - lab safety
-non-recirculating ventilation system -negative air pressure -BS-2 for non-aerosol-producing activities -BS-3 for manipulation of cultures and susceptibility testing -electric incinerators instead of flames to sterilize wire loops -slide-warming trays instead of flames to fix slides -tuberculocidal disinfectants to clean equipment & BSC (1:10 dilution of household bleach) -UV light in BSC (only when not in use) -annual testing of employees for exposure
824
Laboratory ID of Mycobacteria - specimens requiring digestion/decontamination
Sputum & other specimens with normal flora such as gastric lavage, urine, feces
825
Laboratory ID of Mycobacteria - specimens NOT requiring digestion/decontamination
Tissue or body fluids collected aseptically
826
Laboratory ID of Mycobacteria - digestion/decontamination methods
-sodium hydroxide (NaOH) - digestant and decontaminant -*N*-acetyl-L-cysteine/NaOH - NALC is a liquefying agent -benzalkonium chloride -oxalic acid
827
Laboratory ID of Mycobacteria - staining
-cell walls have a high lipid content (mycolic acids) -difficult to stain -resist decolorization by acid alcohol (acid-fast) -gram stain poorly -use carbolfuchsin or fluorochrome acid-fast stains
828
Laboratory ID of Mycobacteria - media
-agar-based (Middlebrook 7H10 & 7H11) -egg-based (Löwenstein-Jensen, Petragnani, American Thoracic Society) -liquid (Middlebrook 7H9) -combination of a solid-based medium & a liquid-based medium recommended for primary isolation
829
Laboratory ID of Mycobacteria - incubation
35*C in 5-10% CO2 (EXCEPTION: if *M. marinum*, *M. ulcerans*, or *M. haemophilum* suspected, incubate at 25-30*C)
830
Laboratory ID of Mycobacteria - rate of growth
-slow -on solid media, most require 2-6 weeks incubation -rapid growers = 2-3 days -more rapid growth in liquid media
831
Laboratory ID of Mycobacteria - automated systems for recovery
-liquid broth inoculated -placed in blood culture instrument for automatic or continuous monitoring -growth indicated by consumption of O2 or production of CO2 -Vitek MS is FDA approved & provides fast turnaround time
832
Laboratory ID of Mycobacteria - methods of identification
-colony morphology -growth rate -optimum temp for growth -photoreactivity -biochemical tests -smear microscopy -nucleus acid hybridization -PCR -automated DNA sequencing -MALDI-TOF
833
Acid-fast stains - Ziehl-Neelsen: -primary stain? -decolorizer? -counterstain?
-Primary stain: Carbolfuchsin -Decolorizer: acid alcohol -Counterstain: methylene blue
834
Acid-fast stains - Kinyoun: -primary stain? -decolorizer? -counterstain?
-Primary stain: carbolfuchsin -Decolorizer: acid alcohol -Counterstain: methylene blue
835
Acid-fast stains - Fluorochrome: -primary stain? -decolorizer? -counterstain?
-Primary stain: auramine-rhodamine -Decolorizer: acid alcohol -Counterstain: potassium permanganate OR acridine orange
836
Acid-fast stains - Ziehl-Neelsen - appearance of AFB
-red, slightly curved, beaded rods (2-8 um) -blue background
837
Acid-fast stains - Kinyoun - appearance of AFB
-red, slightly curved, beaded rods (2-8 um) -blue background
838
Acid-fast stains - Fluorochrome - appearance of AFB
yellow-orange rods against a dark background
839
Acid-fast stains - Ziehl-Neelsen - technique? modification?
-requires heat -examine at least 300 OI fields -wipe lens after positive smears to avoid cross-contamination & false positives -can be modified for improved detection by adding cytospin and Triton processing
840
Acid-fast stains - Kinyoun - technique
-cold stain -examine at least 300 OI fields -wipe lens after positive smears to avoid cross-contamination & false positives
841
Acid-fast stains - Fluorochrome - technique
-more sensitive & faster than carbolfuchsin -can examine at 250X -read immediately or store at 2-8*C in dark to avoid fading -examine at least 300 fields -POSITIVE should be confirmed with carbolfuchsin stain -rapid 2 minute stain now available
842
Classification of Mycobacteria based on pathogenicity - *Mycobacterium tuberculosis* complex (“tubercle bacilli”) - pathogenicity
cause human tuberculosis
843
Classification of Mycobacteria based on pathogenicity - *Mycobacterium tuberculosis* complex (“tubercle bacilli”) - species
Most predominant: -*M. tuberculosis* -*M. bovis* -*M. africanum* -*M. microti* Others: -*M. canetti* -*M. pinnipedii*
844
Classification of Mycobacteria based on pathogenicity - Atypical mycobacteria, nontuberculous mycobacteria (NTM), or mycobacteria other than tubercle (MOTT) bacilli - pathogenicity
-some cause pulmonary infection similar to TB but not transmitted person to person -usually in immunocompromised -contracted from environment (soil, water)
845
Classification of Mycobacteria based on pathogenicity - Atypical mycobacteria, nontuberculous mycobacteria (NTM), or mycobacteria other than tubercle (MOTT) bacilli - species
-*M. avium* -*M. intracellulare* -*M. kansaii* -*M. malmoense* -*M. chelonae* -*M. xenopi* -*M. gordonae*
846
Medically important Mycobacteria - *M. tuberculosis* - pathogenicity
TB
847
Medically important Mycobacteria - *M. tuberculosis* - characteristics
-slow growth -average recovery time by conventional methods is 21 days -rough, dry, buff-colored (no pigmentation) colonies -serpentine cording on smear from culture -niacin & nitrate positive -68*C catalase negative
848
Medically important Mycobacteria - *M. bovis* - pathogenicity
causes disease similar to *M. tuberculosis* and is treated accordingly
849
Medically important Mycobacteria - *M. bovis* - characteristics
-resistant to pyrazinamide -Bacille Calmette-Guerin (BCG) is attenuated strain used in vaccine in some parts of the world -causes false-pos purified protein derivative (PPD) test
850
Medically important Mycobacteria - *M. africanum* - pathogenicity
-causes lung infection -disseminated disease in immunocompromised
851
Medically important Mycobacteria - *M. africanum* - characteristics
-spread by respiratory droplets -endemic in equatorial Africa -rare in the US
852
Medically important Mycobacteria - *M. avium* complex - pathogenicity
-most common NTM to cause lung disease in US -most common systemic bacterial infection in AIDS patients -cervical lymphadenitis in children
853
Medically important Mycobacteria - *M. avium* complex - characteristics
-*M. avium* and *M. intracellulare* most commonly cause lung disease -contracted from environment
854
Medically important Mycobacteria - *M. haemophilum* - pathogenicity
-skin, joint, bone, lung infections in immunocompromised -lymphadenitis in children
855
Medically important Mycobacteria - *M. haemophilum* - characteristics
-requires hemin for growth -grows Best at 28-30*C
856
Medically important Mycobacteria - *M. ulcerans* - pathogenicity
-chronic infection of skin& subcutaneous tissue -Buruli ulcers
857
Medically important Mycobacteria - *M. ulcerans* - characteristics
-endemic in tropics -3rd most common mycobacterial disease after TB & leprosy -grows best at 30*C -molecular techniques aid ID
858
Medically important Mycobacteria - *M. kansaii* - pathogenicity
-2nd common NTM to cause lung disease -causes skin& soft tissue infections, lymphadenitis -can disseminate in immunocompromised
859
Medically important Mycobacteria - *M. kansaii* - characteristics
-often found in tap water -photochromogen -can ID by 16sRNA probe
860
Medically important Mycobacteria - *M. marinum* - pathogenicity
skin infections
861
Medically important Mycobacteria - *M. marinum* - characteristics
-contracted from swimming pools, aquariums -grows best at 28-30*C -photochromogen
862
Medically important Mycobacteria - *M. simiae* - pathogenicity
-rare but associated with chronic respiratory infection
863
Medically important Mycobacteria - *M. simiae* - characteristics
-difficult to treat due to multi drug resistance (MDR) -high mortality & morbidity
864
Medically important Mycobacteria - *M. gordonae* - pathogenicity
rarely causes infection (lab contaminant)
865
Medically important Mycobacteria - *M. gordonae* - characteristics
-“tap-water bacillus” -scotochromogen (does not require light to produce pigment)
866
Medically important Mycobacteria - *M. abscessus* - pathogenicity
-in water, soil, dust -contaminant of medical devices -skin & soft tissue infections -lung infections in those with chronic lung disease, e.g., cystic fibrosis -disseminated infection in immunocompromised
867
Medically important Mycobacteria - *M. abscessus* - characteristics
-rapid grower -tap water reservoir
868
Medically important Mycobacteria - *M. chelonae* - pathogenicity
-disseminated cutaneous infections in immunocompromised -infections of lungs, bone, CNS, prosthetic heart valves
869
Medically important Mycobacteria - *M. chelonae* - characteristics
Rapid grower
870
Medically important Mycobacteria - *M. fortuitum* - characteristics
-rapid grower -common in environment -weakly gram positive -stains with carbolfuchsin, but may not with fluorescent stain
871
Medically important Mycobacteria - *M. fortuitum* - pathogenicity
infection of skin, soft tissues, IV & injection sites, surgical wounds
872
Medically important Mycobacteria - *M. leprae* - pathogenicity
Leprosy (Hansen disease)
873
Medically important Mycobacteria - *M. leprae* - characteristics
-endemic in Southern hemisphere -<100 cases per year in US -most cases in Texas, California, Louisiana, Hawaii, Puerto Rico -armadillos may be reservoir -doesn’t grow on artificial media -can be grown in footpads of mice & armadillos -Dx by acid-fast stain of tissue -less acid fast than *M. tuberculosis*
874
*Chlamydia* and *Chlamydophila* - *Chlamydia trachomatis* - pathogenicity
-most common STD bacterial infection in US -trachoma -lymphogranuloma venereum -non-gonococcal urethritis -pelvic inflammatory disease -pneumonia & conjunctivitis in newborns
875
*Chlamydia* and *Chlamydophila* - *Chlamydia trachomatis* - laboratory diagnosis
-Giemsa stain -direct fluorescent antibody stain -NAATs (most common)
876
*Chlamydia* and *Chlamydophila* - *Chlamydia trachomatis* - characteristics
-obligate intracellular parasite -need epithelial cells for culture -wooden swabs are toxic -NAAT preferred for genital and first-catch urine specimens -commercial systems available for simultaneous detection of *M. gonorrhoeae*
877
*Chlamydia* and *Chlamydophila* - *Chlamydia pneumoniae* - pathogenicity
3rd most common cause of acute RTI
878
*Chlamydia* and *Chlamydophila* - *Chlamydia pneumoniae* - laboratory diagnosis
serological or molecular tests are method of choice
879
*Chlamydia* and *Chlamydophila* - *Chlamydia pneumoniae* - characteristics
-obligate intracellular parasite -risk factor for Guillain-Barre syndrome
880
*Chlamydia* and *Chlamydophila* - *Chlamydia psittaci* - pathogenicity
-Psittacosis ("PARROT FEVER") -rare in the US
881
*Chlamydia* and *Chlamydophila* - *Chlamydia psittaci* - laboratory diagnosis
serological or molecular tests
882
*Chlamydia* and *Chlamydophila* - *Chlamydia psittaci* - characteristics
-obligate intracellular parasite -spread by BIRDS
883
Spirochetes - *Borrelia recurrentis* - pathogenicity
Relapsing fever
884
Spirochetes - *Borrelia recurrentis* - laboratory diagnosis
-Giemsa-or Wright-stained blood smears -thrombocytopenia is common
885
Spirochetes - *Borrelia recurrentis* - characteristics
-transmitted by ticks & lice -there are over 20 species in the relapsing fever *Borrelia* group but *B. recurrentis* causes the most cases
886
Spirochetes - *Borrelia burgdorferi* sensu lato - pathogenicity
-Lyme disease (erythema chronicum migrans, neurological & cardiac abnormalities, arthritis)
887
Spirochetes - *Borrelia burgdorferi* sensu lato - laboratory diagnosis
-grows on modified Kelly medium -ELISA is most common method
888
Spirochetes - *Borrelia burgdorferi* sensu lato - vector
*Ixodes* tick
889
What is the most commonly reported tick-borne infection in the United State?
*Borrelia burgdorferi* (Lyme disease)
890
Spirochetes - *Treponema pallidum* subspecies *pallidum* - pathogenicity
Syphilis
891
Spirochetes - *Treponema pallidum* subspecies *pallidum* -laboratory diagnosis
-doesn't grow on artificial media -darkfield microscopy, fluorescent stain -serology (EIA) is most common method
892
Spirochetes - *Leptospira interrogans* - pathogenicity
Weil disease (infectious jaundice, leptospirosis)
893
Spirochetes - *Leptospira interrogans* - laboratory diagnosis
-PCR or serological tests -can culture: growth = turbidity below surface of semisolid media such as Ellinghausen-McCullough-Johnson-Harris (EMJH) -hold cultures for 13 weeks
894
Spirochetes - *Leptospira interrogans* - characteristics
-zoonotic disease -transmitted by urine of infected animal -organism in blood & CSF during first week, then urine -common in tropical regions
895
*Mycoplasma*/*Ureaplasma* - *Mycoplasma pneumoniae* - pathogenicity
primary atypical pneumonia (walking pneumonia)
896
*Mycoplasma*/*Ureaplasma* - *Mycoplasma pneumoniae* - characteristics
-smallest free-living cells -LACK CELL WALL -pleomorphic -not visible by Gram staining -difficult to grow -culture rarely performed -may take 21 days or more -usually Dx by serology
897
*Mycoplasma*/*Ureaplasma* - *Mycoplasma hominis* - pathogenicity
urogenital tract disease
898
*Mycoplasma*/*Ureaplasma* - *Mycoplasma hominis* - characteristics
-only species that will grow on SBA & CHOC but may require 4 days -PINPOINT translucent colonies easily overlooked -"FRIED-EGG" colonies seen with stereomicroscope after staining with methylene blue -serological methods available
899
*Mycoplasma*/*Ureaplasma* - *Ureaplasma urealyticum* - pathogenicity
urogenital tract disease
900
*Mycoplasma*/*Ureaplasma* - *Ureaplasma urealyticum* - characteristics
-granular brown appearance on A8 agar because of urease production -serological methods available
901
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Rickettsia* - pathogenicity
-Rocky mountain spotted fever -rickettsial pox -epidemic typhus -murine typhus -scrub typhus
902
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Rickettsia* - laboratory diagnosis
-don't grow on artificial media -grow in lice, ticks, tissue culture, eggs -usually Dx by serology -immunohistologic & molecular methods available
903
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Rickettsia* - characteristics
-obligate intracellular parasite -transmitted by ticks, mites, lice, fleas -Rocky mountain spotted fever is most common rickettsial infection in the US - caused by *R. rickettsii* -BSL-3 biohazard
904
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Coxiella* - pathogenicity
Q fever
905
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Coxiella* - laboratory diagnosis
-usual Dx by NAATs and serology -IFA and imaging available
906
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Coxiella* - characteristics
-obligate intracellular parasite -zoonotic disease -found in cattle, sheep, goats -highly contagious -BSL-3 biohazard -reportable disease -potential bioterrorism agent
907
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Ehrlichia* - pathogenicity
Ehrlichiosis
908
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Ehrlichia* - laboratory diagnosis
-morulae (clusters of organisms that resemble blackberry) in WBCs -usual Dx by serology, molecular amplification, and blood smear examination
909
*Rickettsia*, *Ehrlichia*, and *Coxiella* - *Ehrlichia* - characteristics
-obligate intracellular parasites -infects WBCs -transmitted by ticks -disease similar to Rocky Mountain spotted fever
910
Routine culture setup and interpretation - Throat/nasopharynx - media
-SBA -CHOC -*Streptococcus*-selective agar may be used
911
Routine culture setup and interpretation - Throat/nasopharynx - normal flora
-alpha & gamma strep -commensal *Neisseria* -CNS -diphtheroids -*S. pneumoniae* -*Candida*
912
Routine culture setup and interpretation - Throat/nasopharynx - common pathogens
-GAS (*S. pyogenes*)
913
Routine culture setup and interpretation - Throat/nasopharynx - diagnosis
-stab streaking to detect beta strep that only produce streptolysin-O -direct antigen tests for GAS -negative result should be cultured
914
Routine culture setup and interpretation - Sputum, bronchial washings/aspirates, transtracheal aspirates - media
-SBA -CHOC -MAC
915
Routine culture setup and interpretation - Sputum, bronchial washings/aspirates, transtracheal aspirates - normal flora
-CNS -non-beta hemolytic strep -diphtheroids -commensal *Neisseria* -*Haemophilus* -yeast -ASPIRATES: none
916
Routine culture setup and interpretation - Sputum, bronchial washings/aspirates, transtracheal aspirates - common pathogens
-*S. pneumoniae* -*H. influenzae* -*S. aureus* -Enterobacterales -*Pseudomonas* -*M. catarrhalis* -*C. albicans*
917
Routine culture setup and interpretation - Sputum, bronchial washings/aspirates, transtracheal aspirates - diagnosis
-gram stain -acceptable sputum: --<10 epi cells/LPF -->25 seg. neutrophils/LFP -NOTE: neutropenic patients may not produce seg. neutrophils
918
Routine culture setup and interpretation - Urines - media
-SBA -MAC Use 0.01 mL or 0.001 mL calibrated loop
919
Routine culture setup and interpretation - Urines - normal flora
-clean catch: few skin flora -catheterized or aspirate: NONE
920
Routine culture setup and interpretation - Urines - common pathogens
-*E. coli* -*Klebsiella* -*Enterobacter* -*Proteus* -*Pseudomonas* -*S. aureus* -*S. saprophyticus* -CNS -GBS
921
Routine culture setup and interpretation - Urines - diagnosis
-rapid screen for UTI: 1 or more bacteria/OI field on Gram stain of uncentrifuged urine -low counts are significant in catheterized urines & aspirates -3 or more organisms with none predominant = probable contamination
922
Routine culture setup and interpretation - Stool - media
-SBA -MAC -EMB -XLD or HE -Campy blood -possible CIN and/or TCBS
923
Routine culture setup and interpretation - Stool - normal flora
-anaerobes -Enterobacterales -enterococci -strep -yeast
924
Routine culture setup and interpretation - Stool - common pathogens
-*Salmonella* -*Shigella* -*Campylobacter* -diarrheagenic *E. coli* -*Aeromonas* -*Plesiomonas* -*Y. enterocolitica* *Vibrio*
925
Routine culture setup and interpretation - Stool - diagnosis
-seg. neutrophils = invasive diarrhea; e.g., *Salmonella*, *Shigella*, *Campylobacter*, EIEC, *C. difficile* -no seg. neutrophils = enterotoxin-mediated diarrhea; e.g., ETEC, *Vibrio* -RBCs with EHEC
926
Routine culture setup and interpretation - Genital - media
-SBA -CHOC -MAC -Thayer-Martin -add THIO & anaerobic media for tissue & aspirates
927
Routine culture setup and interpretation - Genital - normal flora
-Urethra: CNS, diphtheroids -Vagina, pre-pubescent/postmenopausal: yeast, GNR, GPC -Vagina, reproductive years: *Lactobacillus*, PGC -Surgical/aspirates: NONE
928
Routine culture setup and interpretation - Genital - common pathogens
-*N. gonorrhoeae* -*C. albicans* -GBS -*S. aureus* -Surgical/aspirates: also anaerobes
929
Routine culture setup and interpretation - Genital - diagnosis
Gram stain
930
Routine culture setup and interpretation - CSF - media
-SBA -CHOC -MAC -some add THIO
931
Routine culture setup and interpretation - CSF - normal flora
NONE
932
Routine culture setup and interpretation - CSF - common pathogens
-GBS (infants) -*Listeria* (infants, elderly) -*H. influenzae* (unimmunized children) -*N. meningitidis* -*S. pneumoniae -GNR Any isolate is significant.
933
Routine culture setup and interpretation - CSF - diagnosis
-use tube 2 -handle STAT -DO NOT refrigerate -use of cytocentrifuge to concentrate specimen increases sensitivity of Gram stain -ID all isolates
934
Routine culture setup and interpretation - Blood - media
-most labs inoculate an aerobic & anaerobic bottle -some use 2 aerobic bottles, no anaerobic
935
Routine culture setup and interpretation - Blood - normal flora
NONE -common contaminants: CNS, *Micrococcus*, alpha strep, diphtheroids, *Cutibacterium*
936
Routine culture setup and interpretation - Blood - common pathogens
any isolate potentially significant -GPC are most common
937
Routine culture setup and interpretation - Blood - diagnosis
-skin prep: 80-95% ethanol or isopropyl alcohol followed by povidone-iodine or tincture of iodine -optimum volume: adult, 20 mL; child, 1 mL per year of life -blood-to-broth ratio: 1:5 to 1:10 -usually draw 2 sets in 24 hours -automated systems used for monitoring -growth indicated by consumption of O2 or production of CO2 -Gram stain & subculture required for ID
938
Routine culture setup and interpretation - Wound - media
-SBA -CHOC -MAC -surgical, aspirate, or tissue: add anerobic blood, KVLB, THIO
939
Routine culture setup and interpretation - Wound - normal flora
-CNS -diphtheroids -*Cutibacterium* -surgical, aspirate, or tissue: NONE
940
Routine culture setup and interpretation - Wound - common pathogens
-*S. aureus* -beta-hemolytic strep -Enterobacterales -*P. aeruginosa* -surgical, aspirate, or tissue: also anaerobes -human bite: alpha-hemolytic strep, *S. aureus*, *S. pyogenes*, *Eikenella corrodens*, anaerobes
941
Routine culture setup and interpretation - Wound - diagnosis
Gram stain
942
Routine culture setup and interpretation - Eye - media
-SBA -CHOC
943
Routine culture setup and interpretation - Eye - normal flora
-CNS -diphtheroids -*Cutibacterium*
944
Routine culture setup and interpretation - Eye - common pathogens
-*H. influenzae* -*S. pneumoniae* -*S. aureus* -Enterobacterales -*Pseudomonas*
945
Routine culture setup and interpretation - Eye - diagnosis
-Gram stain - if POS, call -Keratitis = EMERGENCY - loss of eye can occur
946
Routine culture setup and interpretation - Ear - media
-SBA -CHOC -MAC
947
Routine culture setup and interpretation - Ear - normal flora
normal skin flora
948
Routine culture setup and interpretation - Ear - common pathogens
-*S. pneumoniae* -*H. influenzae* -GAS -*M. catarrhalis* -*S. aureus* -*Pseudomonas*
949
Routine culture setup and interpretation - Ear - diagnosis
Gram stain
950
Fecal pathogens - OXIDASE positive
-*Campylobacter* -*Vibrio* -*Aeromonas* -*Plesiomonas*
951
Fecal pathogens - OXIDASE negative
-*Escherichia coli* -*Salmonella* -*Shigella* -*Yersinia*
952
Major classes of antibiotics - Natural penicillins - representative antibiotics
-Penicillin V -Penicillin G
953
Major classes of antibiotics - Natural penicillins - mode of action
inhibit cell wall synthesis
954
Major classes of antibiotics - Natural penicillins - spectrum of activity
-narrow -GPs other than staph -some GN
955
Major classes of antibiotics - Natural penicillins - characteristics
-beta-lactam -bactericidal -allergic reaction common side effect
956
Major classes of antibiotics - Synthetic penicillins - representative antibiotics
-methicillin -oxacillin -ampicillin -carbenicillin -piperacillin
957
Major classes of antibiotics - Synthetic penicillins - mode of action
inhibit cell wall synthesis
958
Major classes of antibiotics - Synthetic penicillins - spectrum of activity
-broader spectrum of activity than natural penicillins -GPs (not MRSA) & GNs
959
Major classes of antibiotics - Synthetic penicillins - characteristics
-beta-lactam -bactericidal -penicillinase-resistant penicillins = oxacillin, methicillin, nafcillin, cloxacillin, dicloxacillin -drug class of choice for STAPH infections
960
Major classes of antibiotics - Cephalosporins - representative antibiotics
-cephalexin -cefotoxin -ceftriaxone -cefepime
961
Major classes of antibiotics - Cephalosporins - mode of action
inhibit cell wall synthesis
962
Major classes of antibiotics - Cephalosporins - spectrum of activity
-GPs & GNs -each generation has broader spectrum of activity than previous
963
Major classes of antibiotics - Cephalosporins - characteristics
-beta-lactam -bactericidal
964
Major classes of antibiotics - Carbapenems - representative antibiotics
Imipenem
965
Major classes of antibiotics - Carbapenems - mode of action
inhibit cell wall synthesis
966
Major classes of antibiotics - Carbapenems - spectrum of activity
-widest spectrum -GPs & GNs, including *P. aeruginosa* & anaerobes, but NOT MRSA or VRE
967
Major classes of antibiotics - Carbapenems - characteristics
-beta-lactam -bactericidal -reserved for IV use in serious infections
968
Major classes of antibiotics - Monobactams - representative antibiotics
Aztreonam
969
Major classes of antibiotics - Monobactams - mode of action
inhibit cell wall synthesis
970
Major classes of antibiotics - Monobactams - spectrum of activity
-*P. aeruginosa* & other GNR -low activity against GPs & anaerobes
971
Major classes of antibiotics - Monobactams - characteristics
-beta-lactam -bactericidal
972
Major classes of antibiotics - Glycopeptides - representative antibiotics
Vancomycin
973
Major classes of antibiotics - Glycopeptides - mode of action
inhibit cell wall synthesis
974
Major classes of antibiotics - Glycopeptides - spectrum of activity
-GPs -drug of choice for MRSA -some strain of *Enterococcus* are now resistant (VRE)
975
Major classes of antibiotics - Glycopeptides - characteristics
-bactericidal -used for serious infections
976
Major classes of antibiotics - Macrolides - representative antibiotics
-erythromycin -clarithromycin -azithromycin
977
Major classes of antibiotics - Macrolides - mode of action
inhibit RNA-dependent protein synthesis
978
Major classes of antibiotics - Macrolides - spectrum of activity
-GPs & some GNs -intracellular organisms -atypical mycobacteria
979
Major classes of antibiotics - Macrolides - characteristics
bacteriostatic
980
Major classes of antibiotics - Tetracyclines - representative antibiotics
-tetracycline -doxycycline
981
Major classes of antibiotics - Tetracyclines - representative antibiotics
-tetracycline -doxycycline
982
Major classes of antibiotics - Tetracyclines - mode of action
inhibit protein synthesis
983
Major classes of antibiotics - Tetracyclines - spectrum of activity
-GPs & GNs -intracellular organisms -spirochetes -MRSA -VRE
984
Major classes of antibiotics - Tetracyclines - characteristics
-bacteriostatic -used less often than B-lactams -NOT given to children or pregnant women due to staining of teeth, abnormal bone growth
985
Major classes of antibiotics - Aminoglycosides - representative antibiotics
-gentamycin -tobramycin -amikacin
986
Major classes of antibiotics - Aminoglycosides - mode of action
inhibit protein synthesis by binding irreversibly to 30S ribosomal subunit
987
Major classes of antibiotics - Aminoglycosides - spectrum of activity
-used primarily for GNs (including *P. aeruginosa*) -ineffective against anaerobes
988
Major classes of antibiotics - Aminoglycosides - characteristics
-bactericidal -toxic to kidneys & ears -only used to treat serious GN infections
989
Major classes of antibiotics - Sulfonamides - representative antibiotics
-Sulfamethoxazole (SMZ) -Trimethoprim (TMP)
990
Major classes of antibiotics - Sulfonamides - mode of action
inhibit folic acid synthesis
991
Major classes of antibiotics - Sulfonamides - spectrum of activity
broad spectrum of activity against Enterobacterales
992
Major classes of antibiotics - Sulfonamides - characteristics
-bacteriostatic -used primarily for UTI
993
Major classes of antibiotics - Quinolones - representative antibiotics
-ciprofloxacin -levofloxacin -ofloxacin
994
Major classes of antibiotics - Quinolones - mode of action
inhibit DNA synthesis
995
Major classes of antibiotics - Quinolones - spectrum of activity
broad spectrum
996
Major classes of antibiotics - Quinolones - characteristics
-bactericidal -used to treat serious infections -ciprofloxacin used for anthrax
997
What antibiotic is used to treat anthrax?
anthrax
998
Major classes of antibiotics - Lincosamides - representative antibiotics
clindamycin
999
Major classes of antibiotics - Lincosamides - mode of action
inhibit protein synthesis
1000
Major classes of antibiotics - Lincosamides - spectrum of activity
-GPC (including MRSA) -anaerobes
1001
Major classes of antibiotics - Lincosamides - spectrum of activity
-GPC (including MRSA) -anaerobes
1002
Major classes of antibiotics - Lincosamides - characteristics
one of the most effective antibiotics against ANAEROBES but resistance is increasing
1003
Disk diffusion susceptibility method (Kirby Bauer) - organisms
-rapidly grow aerobes & facultative anaerobes -NOT for slow growers, anaerobes, or fastidious organisms (except with modifications)
1004
Disk diffusion susceptibility method (Kirby Bauer) - inoculum
-18-24 hour pure culture -1.5 x 10^8 CFU/mL -compare to 0.5 McFarland standard -too heavy = smaller zones/false resistant -too light = larger zones/false susceptible
1005
Disk diffusion susceptibility method (Kirby Bauer) - medium
-Mueller-Hinton (MH) agar -swab entire surface evenly to achieve solid lawn of growth
1006
Disk diffusion susceptibility method (Kirby Bauer) - disks
-store in refrigerator or freezer in sealed, desiccated container -warm to RT before use -check expiration dates -place within 15 minutes of inoculation -no more than 12 per 150-mm plate
1007
Disk diffusion susceptibility method (Kirby Bauer) - incubation
-within 15 minutes of disk placement -inverted -ambient air -35*C for 16-18 hours -<16 hours = increased zone, false susceptible ->18 hours = decreased zone, false resistant EXCEPTION: MRSA may require 24 hours
1008
Disk diffusion susceptibility method (Kirby Bauer) - modifications for fastidious bacteria
-*Streptococcus*: use MH supplemented with 5% sheep blood; incubate in 5-7% CO2 -*Haemophilus*: use *Haemophilus* test medium (HTM); incubate in 5-7% CO2
1009
Disk diffusion susceptibility method (Kirby Bauer) - reading
-routine: measure zones from back side of plate using ruler or calipers -media containing blood: read from top with lid removed
1010
Disk diffusion susceptibility method (Kirby Bauer) - situations/actions
-sparse growth: repeat with standardized inoculum -mixed culture: repeat with pure inoculum -colonies within zone: subculture & retest -slight growth in zone for TMP & sulfonamides: disregard -swarming of *Proteus* into zone: ignore
1011
Disk diffusion susceptibility method (Kirby Bauer) - reporting
resistant, intermediate, or susceptible based on zone of inhibition in mm
1012
Disk diffusion susceptibility method (Kirby Bauer) - quality control (QC)
-test QC strains of *E.coli*, *S.aureus*, *P.aeruginosa*, *Enterococcus faecalis* for 20-30 consecutive days -if results are acceptable, frequency may be reduced to weekly if all other guidelines are followed
1013
Other susceptibility tests - Minimal inhibitory concentration (MIC)
-standard inoculum added to serial dilutions of antibiotics & incubated -MIC = least amount of antibiotic (highest dilution) that prevents visible growth -can be done in tubes, microtiter trays, or automated systems
1014
Other susceptibility tests - Minimal bacterial concentration
-clear tubes from MIC are subcultured to agar -MBC = concentration of antibiotic that results in 99.9% decrease in CFU per mL
1015
Other susceptibility tests - Beta-Lactamase
-detects enzyme that cleaves beta-lactam ring, rendering penicillin & cephalosporins ineffective -test *Haemophilus*, *N.gonorrhoeae*, *Moraxella* -bacteria applied to moistened disk impregnated with cephalosporin nitrocefin (Cefinase disk) -RED color if beta-lactam ring is broken, i.e., organism produces beta-lactamase
1016
Other susceptibility tests - screen for penicillin susceptibility in *S. pneumoniae*
-test with oxacillin disk instead of penicillin disk -more sensitive in detecting resistance -Mueller-Hinton with 5% sheep blood inoculated with organism -oxacillin sick (1 mcg) placed -incubated overnight in 5-7% CO2 -zone of inhibition >=20 mm = susceptible to penicillin -zone of inhibition <20 mm = perform MIC
1017
Other susceptibility tests - tests for oxacillin- (methicillin-) resistant *S.aureus* (MRSA)
-oxacillin used as class representative for penicillinase-resistant penicillins -organism resistant to it is resistant to all -oxacillin screen plate: Mueller-Hinton with 4% NaCl & oxacillin (6 mcg/mL) inoculated & incubated overnight -any growth = resistant -not suitable for testing CNS -CLSI recommends cefoxitin disk diffusion method for both *S.aureus* & CNS
1018
Other susceptibility tests - vancomycin screen
-for detection of VRE -brain-heart infusion agar plus 6 mcg vancomycin/mL inoculated & incubated overnight -growth = resistance -can also be used for * S.aureus*
1019
Other susceptibility tests - E test
-plastic strip containing concentration gradient placed on inoculum lawn on Mueller-Hinton plate & incubated overnight -MIC = point where border or growth inhibition intersects strip -useful for testing fastidious organisms such as *S.pneumoniae*, other strep, *H. influenzae*, & anaerobes
1020
Other susceptibility tests - D test (inducible clindamycin resistance)
-to detect inducible clindamycin resistance in MRSA isolated that are resistant to erythromycin & susceptible to clindamycin on initial testing -erythromycin & clindamycin disks placed 15-26 mm apart on Mueller-Hinton agar inoculated with organism -after overnight incubation, flattened zone between disks (D-shaped zone of inhibition aground clindamycin disk) means erythromycin induces clindamycin resistance = clindamycin reported as resistant -similar procedure for beta-hemolytic strep except Mueller-Hinton with sheep blood used & disks placed 12 mm apart
1021
Automated susceptibility testing - susceptibility
-broth with various dilutions of antibiotics are inoculated & incubated -growth is determined by photometry, turbidity, or fluorescence, depending on system
1022
Automated susceptibility testing - features
-walk-away capability -LIS interface -generation of institutional antibiograms -epidemiology reportz
1023
Automated susceptibility testing - advantages
-accuracy -short TAT -frees tech for other duties
1024
Automated susceptibility testing - limitations
-only for rapidly growing organisms -not all microorganisms are in databases
1025
Examples of quality control in microbiology labs - autoclave - requirements
-spore test weekly (*B. stearothermophilus* -must reach 121*C/15 psi
1026
Examples of quality control in microbiology labs - balances - requirements
check for accuracy annually
1027
Examples of quality control in microbiology labs - biosafety cabinet - requirements
check airflow annually
1028
Examples of quality control in microbiology labs - centrifuges - requirements
check rpm every 6 months
1029
Examples of quality control in microbiology labs - CO2 incubator - requirements
check CO2 & temperature daily
1030
Examples of quality control in microbiology labs - gas pack - requirements
check for anaerobiosis with methylene blue strip each use (white = no O2; blue = O2)
1031
Examples of quality control in microbiology labs - microscopes - requirements
clean & adjust 4 times per year
1032
Examples of quality control in microbiology labs - temperatures - requirements
daily checks of incubators, heating blocks, water baths, refrigerators, freezers
1033
Examples of quality control in microbiology labs - thermometers - requirements
must be checked against reference thermometer from National Bureau of Standards
1034
Examples of quality control in microbiology labs - instrument logs - requirements
document routine function checks, preventive maintenance service -maintain for life of instrument
1035
Examples of quality control in microbiology labs - Gram stain - requirements
control slide weekly (*E. coli* & *S.aureus*)
1036
Examples of quality control in microbiology labs - reagents - requirements
most are tested each day of use with positive & negative controls
1037
Examples of quality control in microbiology labs - media - requirements
-most are exempt from retesting if purchased from manufacturer who follows CLSI guidelines -obtain & retain statement of QC -retesting required for CHOC, selective media for *Neisseria* & *Campylobacter*
1038
Examples of quality control in microbiology labs - procedure manual - requirements
-must be reviewed & signed annually by lab director -changes must be approved & signed by lab director -obsolete procedures must be removed & retained for 2 years
1039
Examples of quality control in microbiology labs - employee competency - requirements
verification on hiring & annually
1040
Examples of quality control in microbiology labs - proficiency testing - requirements
-test unknowns exactly as patient specimens -must maintain an average score of 80% -document corrective action
1041
Stool specimens for Ova & Parasites - consistency - liquid: -max time between collection & examination? -parasites recovered?
-30 minutes -trophozoites (trophs), helminth eggs, larvae
1042
Stool specimens for Ova & Parasites - consistency - semisolid: -max time between collection & examination? -parasites recovered?
-1 hour -trophs, helminth eggs, larvae
1043
Stool specimens for Ova & Parasites - consistency - formed: -max time between collection & examination? -parasites recovered?
-24 hours -cysts, helminth eggs, larvae
1044
Ova and parasite fresh stool examination - number of specimens
-1-3 for routine workup -patients should submit 3 stool specimens, one every other day
1045
Ova and parasite fresh stool examination - interfering substances
-antibiotics -antiseptics -barium -laxatives -mineral oil -soap -water -urine
1046
Ova and parasite fresh stool examination - preservation
-PVA -5-10% formalin -MIF -SAF Formed stools may be refrigerated for 1-2 days
1047
Ova and parasite fresh stool examination - direct smear, saline
-on fresh liquid stools -to observe motility of trophs
1048
Ova and parasite fresh stool examination - direct smear, iodine
-1% D'Antoni or Lugol iodine -to observe nuclei of cysts -trophs will be killed
1049
Ova and parasite fresh stool examination - concentration
to concentrate parasites & separate from fecal debris
1050
Ova and parasite fresh stool examination - concentration - sedimentation method
-Formalin-ethyl acetate -recovers eggs, larvae, cysts
1051
Ova and parasite fresh stool examination - concentration - flotation method
-33% zinc sulfate -specific gravity 1.18 -parasites float to top -may miss operculated eggs, unfertilized *Ascaris*
1052
Ova and parasite fresh stool examination - permanent stained slides
-for Dx of protozoa -PVA fixed or fresh specimen -iron hematoxylin or trichrome stain
1053
Intestinal amebae - *Entamoeba histolytica* - nucleus
-round -fine, even peripheral chromatin -small, delicate, central karyosome
1054
Intestinal amebae - *Entamoeba histolytica* - troph
-10-60 um, average 20 um -1 nucleus -delicate, finely granular cytoplasm -ingested RBCs -seldom contains bacteria -single, long, finger-like pseudopod -directional motility
1055
Intestinal amebae - *Entamoeba histolytica* - cyst
-round -10-20 um -2-4 nuclei -10% have cigar-shaped chromatoid bodies -may have glycogen vacuoles
1056
Intestinal amebae - *Entamoeba histolytica* - pathogenicity
-causes acute amebic dysentery -can cause extraintestinal amebiasis
1057
What intestinal ameba is the only ameba that ingests RBCs?
*Entamoeba histolytica*
1058
Intestinal amebae - *Entamoeba histolytica* - diagnosis
-EIA for antigen detection -molecular testing available
1059
Intestinal amebae - *Entamoeba hartmanni* - nucleus
-round -fine, even peripheral chromatin -small, delicate, central karyosome
1060
Intestinal amebae - *Entamoeba hartmanni* - troph
-5-12 um -1 nucleus -delicate, finely granular cytoplasm -ingests bacteria -single, long, finger-like pseudopod -directional motility
1061
Intestinal amebae - *Entamoeba hartmanni* - cyst
-round -5-9 um -2-4 nuclei -10% have cigar-shaped chromatoid bodies -may have glycogen vacuoles
1062
Intestinal amebae - *Entamoeba hartmanni* - pathogenicity
non-pathogenic
1063
Intestinal amebae - *Entamoeba coli* - nucleus
-coarse, irregular peripheral chromatin -eccentric karyosome
1064
Intestinal amebae - *Entamoeba coli* - troph
-15-50 um -coarse cytoplasm with many vacuoles & ingested bacteria -short, blunt, multiple pseudopods -sluggish non-directional motility
1065
Intestinal amebae - *Entamoeba coli* - cyst
-round -10-35 um -2-8 nuclei -occasional chromatoid bodies with splintered ends -may have glycogen vacuoles
1066
Intestinal amebae - *Entamoeba coli* - pathogenicity
non-pathogenic
1067
Intestinal amebae - *Endolimax nana* - nucleus
-no peripheral chromatin -large, irregular karyosome
1068
Intestinal amebae - *Endolimax nana* - troph
-2-12 um -single nucleus -finely granular vacuolated cytoplasm -blunt pseudopods -sluggish, non-progressive motility
1069
Intestinal amebae - *Endolimax nana* - cyst
-5-10 um -round to oval -usually 4 nuclei -no chromatoid bodies -may have poorly defined glycogen mass
1070
Intestinal amebae - *Endolimax nana* - pathogenicity
non-pathogenic
1071
What intestinal ameba is on eof the smallest amoeba?
*Endolimax nana*
1072
Intestinal amebae - *Iodamoeba butschlii* - nucleus
-no peripheral chromatin -large karyosome surrounded by layer of small granules
1073
Intestinal amebae - *Iodamoeba butschlii* - troph
-8-20 um -coarsely granular cytoplasm with vacuoles & bacteria -blunt pseudopod -sluggishly progressive motility
1074
Intestinal amebae - *Iodamoeba butschlii* - cyst
-5-20 um -ovoid -1 nucleus -prominent glycogen vacuole -"Iodine cyst"
1075
Intestinal amebae - *Iodamoeba butschlii* - pathogenicity
non-pathogenic
1076
What intestinal ameba is the only ameba with just one nucleus in cyst?
*Iodamoeba butschlii*
1077
Intestinal amebae - *Blastocystis hominis* - nucleus
up to 4, pushed to the side
1078
Intestinal amebae - *Blastocystis hominis* - troph
-round -6-40 um -large central body
1079
Intestinal amebae - *Blastocystis hominis* - cyst
NONE
1080
Intestinal amebae - *Blastocystis hominis* - pathogenicity
-uncertain -does cause diarrhea, fever, abdominal pain, & vomiting
1081
True or False. *Blastocystis hominis* should be quantitated.
True
1082
What intestinal ameba was formerly classified as a yeast?
*Blastocystis hominis*
1083
Flagellates of the intestinal and urogenital tracts - GI tract - *Dientamoeba fragilis* - troph
-5-15 um -80% have 2 nuclei -no peripheral chromatin -karyosome is mass of 4-8 granules
1084
Flagellates of the intestinal and urogenital tracts - GI tract - *Dientamoeba fragilis* - cyst
-rarely observed -contains 2 nuclei, each with a large karyosome, in the center of the cell
1085
Flagellates of the intestinal and urogenital tracts - GI tract - *Dientamoeba fragilis* - transmission
-fecal-oral -oral-anal
1086
Flagellates of the intestinal and urogenital tracts - GI tract - *Dientamoeba fragilis* - pathogenic?
Yes
1087
Flagellates of the intestinal and urogenital tracts - GI tract - *Dientamoeba fragilis* - flagella
only visible with an electron microscope
1088
Flagellates of the intestinal and urogenital tracts - GI tract - *Giardia intestinalis* (also known as *G. lamblia* or *G. duodenalis*) - troph
-pear-shaped -10-20 um -2 nuclei with large central karyosomes -4 pairs of flagella -anterior & ventral sucking disks -2 axostyles -2 median bodies -"Old man in glasses" -FALLING LEAF motility
1089
Flagellates of the intestinal and urogenital tracts - GI tract - *Giardia intestinalis* (also known as *G. lamblia* or *G. duodenalis*) - cyst
-ovoid -8-19 um -thick double wall -cytoplasm shrinks away from cell wall -2-4 nuclei at anterior end -median bodies & axostyles
1090
Flagellates of the intestinal and urogenital tracts - GI tract - *Giardia intestinalis* (also known as *G. lamblia* or *G. duodenalis*) - transmission
ingestion of cyst in contaminated water, oral-anal, pets
1091
Flagellates of the intestinal and urogenital tracts - GI tract - *Giardia intestinalis* (also known as *G. lamblia* or *G. duodenalis*) - pathogenic?
Yes
1092
Flagellates of the intestinal and urogenital tracts - GI tract - *Giardia intestinalis* (also known as *G. lamblia* or *G. duodenalis*) - Enterotest
-patient swallows capsule attached to string -string withdrawn after 4 hours and mucus is examined -antigen detected
1093
Flagellates of the intestinal and urogenital tracts - GI tract - *Chilomastix mesnili* - troph
-6-24 um -broad anterior, tapering posterior -3 flagella at anterior -1 flagella posterior -spiral groove running length of body -prominent cytostome bordered by fibrils -single nucleus at anterior -stiff rotary motility
1094
Flagellates of the intestinal and urogenital tracts - GI tract - *Chilomastix mesnili* - cyst
-6-10 um -round with bulge at anterior -single large nucleus -hourglass-shaped cytostome & prominent fibrils -"Lemon cyst"
1095
Flagellates of the intestinal and urogenital tracts - GI tract - *Chilomastix mesnili* - transmission
ingestion of cyst
1096
Flagellates of the intestinal and urogenital tracts - GI tract - *Chilomastix mesnili* - pathogenic?
No
1097
Flagellates of the intestinal and urogenital tracts - GI tract - *Pentatrichomonas hominis* - troph
-6-14 um -prominent axostyle extending through posterior -4 anterior flagella -undulating membrane entire length of body along costa -1 oval nucleus with small karyosome -rotary motion
1098
Flagellates of the intestinal and urogenital tracts - GI tract - *Pentatrichomonas hominis* - cyst
NONE
1099
Flagellates of the intestinal and urogenital tracts - GI tract - *Pentatrichomonas hominis* - transmission
ingestion of fecally contaminated material
1100
Flagellates of the intestinal and urogenital tracts - GI tract - *Pentatrichomonas hominis* - pathogenic?
No
1101
Flagellates of the intestinal and urogenital tracts - Urogenital tract - *Trichomonas vaginalis* - troph
-5-18 um -4 anterior flagella -undulating membrane that extends half the body
1102
Flagellates of the intestinal and urogenital tracts - Urogenital tract - *Trichomonas vaginalis* - cyst
NONE
1103
Flagellates of the intestinal and urogenital tracts - Urogenital tract - *Trichomonas vaginalis* - transmission
sexual
1104
Flagellates of the intestinal and urogenital tracts - Urogenital tract - *Trichomonas vaginalis* - pathogenic?
Yes
1105
What flagellate is the only flagellate in the urogenital tract?
*Trichomonas vaginalis*
1106
Flagellates of the intestinal and urogenital tracts - Urogenital tract - *Trichomonas vaginalis* - diagnosis
-wet mount (jerky motility) -culture -rapid antigen tests -PCR
1107
Intestinal ciliates - *Balantidium coli* (*Neobalantidium coli*) - troph
-ovoid -usually 40-50 um, but can reach 200 um -covered with cilia -funnel-shaped cytostome -macronucleus & micronucleus -vacuoles -rapid rotary motion
1108
Intestinal ciliates - *Balantidium coli* (*Neobalantidium coli*) - cyst
-round -45-65 um -thick refractile cell wall -no cilia
1109
Intestinal ciliates - *Balantidium coli* (*Neobalantidium coli*) - transmission
ingestion of cyst
1110
Intestinal ciliates - *Balantidium coli* (*Neobalantidium coli*) - pathogenic?
Yes
1111
What ciliate is the only ciliate that is pathogenic to humans?
*Balantidium coli* (*Neobalantidium coli*)
1112
What is the largest protozoan of humans?
*Balantidium coli* (*Neobalantidium coli*)
1113
Which intestinal ciliate is common in pigs?
*Balantidium coli* (*Neobalantidium coli*)
1114
Intestinal sporozoans - *Cystoisospora (Isospora) belli* - transmission
ingestion of oocysts in fecally contaminated food or water
1115
Intestinal sporozoans - *Cystoisospora (Isospora) belli* - diagnosis
-oocysts in feces -30 x 12 um -transparent -stain well with iodine -1-2 sporoblasts
1116
Intestinal sporozoans - *Cystoisospora (Isospora) belli* - definitive host
human
1117
Intestinal sporozoans - *Cystoisospora (Isospora) belli* - symptoms
-anorexia -nausea -abdominal pain -diarrhea -possible malabsorption
1118
Intestinal sporozoans - *Cryptosporidium parvum* and *Cryptosporidium hominis* - transmission
-ingestion of oocysts from food or water contamination with animal feces -oral/anal route -direct contact with infected individual or animal
1119
Intestinal sporozoans - *Cryptosporidium parvum* and *Cryptosporidium hominis* - diagnosis
-modified acid-fast stain of feces -red spherical bodies 3-6 um -4 sporozoites -immunoassay kits
1120
Intestinal sporozoans - *Cryptosporidium parvum* and *Cryptosporidium hominis* - fecal oocysts of both species
indistinguishable by routine microscopy
1121
Intestinal sporozoans - *Cryptosporidium parvum* and *Cryptosporidium hominis* - symptoms
-chronic diarrhea in immunocompromised or those with AIDS -acute self-limited diarrhea in immunocompetent
1122
Intestinal sporozoans - *Cyclospora cayetanensis* - transmission
contaminated food & water
1123
Intestinal sporozoans - *Cyclospora cayetanensis* - diagnosis
-oocysts in direct wet mount -8-10 um -variable staining with modified acid-fast stain -autofluorescence under UV light -bright blue at 365 nm -mint green at 450-490 nm -antigen-based immunoassay kits during outbreaks -PCR
1124
Intestinal sporozoans - *Cyclospora cayetanensis* - symptoms
prolonged diarrhea
1125
Intestinal sporozoans - *Microsporidia* - transmission
ingestion of spores
1126
Intestinal sporozoans - *Microsporidia* - diagnosis
-histology on tissue using acid-fast and periodic acid-schiff (PAS) stains -chromotrophic stains also
1127
True or False. Microsporidia are small obligate intracellular parasites.
True
1128
Intestinal sporozoans - *Microsporidia* - symptoms
-causes prolonged diarrhea -can disseminate Opportunistic pathogen, mainly in AIDS patients.
1129
Intestinal sporozoans - *Microsporidia* - molecular studies indicate?
related to fungi
1130
Intestinal nematodes - *Trichuris trichiura* - route of infection
ingestion of infective egg
1131
Intestinal nematodes - *Trichuris trichiura* - diagnostic stage
-undeveloped eggs in feces -barrel-shaped ovum -50 x 23 um -brown or yellow -clear plug at either end
1132
Intestinal nematodes - *Trichuris trichiura* - also called?
Whip worm
1133
Intestinal nematodes - *Trichuris trichiura* - what is required before the eggs become infective?
eggs require a developmental period in warm soil before infective
1134
Intestinal nematodes - *Trichuris trichiura* - causes?
eosinophilia
1135
Intestinal nematodes - *Enterobius vermicularis* - route of infection
ingestion of infective egg
1136
Intestinal nematodes - *Enterobius vermicularis* - diagnostic stage
-ovoid ovum -50 x 20 um -1 side flattened -colorless -larva inside
1137
Intestinal nematodes - *Enterobius vermicularis* - also called?
Pinworm
1138
Intestinal nematodes - *Enterobius vermicularis* - causes?
itching when adult female migrates out of anus at night to deposit eggs
1139
Intestinal nematodes - *Enterobius vermicularis* - diagnosis (tape)
cellophane tape prep taken early in the morning when the patient first wakes
1140
Intestinal nematodes - *Necator americanus* - route of infection
skin penetration or ingestion of filariform larva
1141
Intestinal nematodes - *Necator americanus* - diagnostic stage
-ovoid ovum -40 x 60 um -colorless -contains segmented embryo 2- to 8-cell stage surrounded by clear outer zone
1142
Intestinal nematodes - *Necator americanus* - also called?
New World hookworm
1143
Intestinal nematodes - *Necator americanus* - causes?
-severe allergic itching can develop - "Ground itch" -eosinophilia -can lead to anemia
1144
Intestinal nematodes - *Necator americanus* - larval migration
through lungs
1145
Intestinal nematodes - *Ancylostoma duodenale* - route of infection
skin penetration or ingestion of filariform larva
1146
Intestinal nematodes - *Ancylostoma duodenale* - diagnostic stage
-ovoid ovum -40 x 60 um -colorless -contains segmented embryo 2- to 8-cell stage surrounded by clear outer zone
1147
Intestinal nematodes - *Ancylostoma duodenale* - also called?
Old World hookworm
1148
Intestinal nematodes - *Strongyloides stercoralis* - route of infection
-skin penetration by filariform larva -sexual transmission -autoreinfection
1149
Intestinal nematodes - *Strongyloides stercoralis* - diagnostic stage
-rhabditiform larvae -200-250 um long x 16 um in diameter -short buccal cavity -large bulb in esophagus -prominent genital primordium
1150
Intestinal nematodes - *Strongyloides stercoralis* - also called?
Threadworm
1151
Intestinal nematodes - *Strongyloides stercoralis* - larval migration
through lungs
1152
Intestinal nematodes - *Strongyloides stercoralis* - diagnosis (tests)
-duodenal aspirates and/or Enterotest -serology (EIA)
1153
Intestinal nematodes - *Strongyloides stercoralis* - must differentiate from?
hookworm larvae
1154
Intestinal nematodes - *Strongyloides stercoralis* - immunocompromised patients
can disseminate & be fatal
1155
Intestinal nematodes - *Strongyloides stercoralis* - causes?
eosinophilia
1156
True or False. *Strongyloides stercoralis* is not infectious to laboratorians.
False
1157
Intestinal nematodes - *Ascaris lumbricoides* - route of infection
ingestion of infective ovum
1158
Intestinal nematodes - *Ascaris lumbricoides* - diagnostic stage
Fertilized ovum: -ovoid -50-75 um x 40-60 um -yellow to brown -granular yolk -clear zones at either end -may have mammillated covering or be decorticated Nonfertilized ovum: -larger & more elongated -thinner shell -no concentric clear zones -can be mammillated or decorticated
1159
Intestinal nematodes - *Ascaris lumbricoides* - also called?
Roundworm
1160
What is the most common helminth worldwide?
*Ascaris lumbricoides*
1161
Intestinal nematodes - *Ascaris lumbricoides* - often seen with?
*Trichuris*
1162
Intestinal nematodes - *Ascaris lumbricoides* - requirements for egg to become infective
eggs require several weeks in soil to become infective
1163
Intestinal nematodes - *Ascaris lumbricoides* - larval migration
through lungs
1164
Intestinal nematodes - *Ascaris lumbricoides* - the adult resembles?
earthworms
1165
Intestinal nematodes - *Ascaris lumbricoides* - may pass from?
-anus -mouth -nose
1166
Intestinal nematodes - *Ascaris lumbricoides* - causes?
eosinophilia
1167
Intestinal nematodes - *Ascaris lumbricoides* - diagnosis (test)
ELISA
1168
Intestinal cestodes - *Taenia saginata* - scolex
-tetragonal -4 cup-shaped suckers -no hooklets
1169
Intestinal cestodes - *Taenia saginata* - gravid proglottid
-longer than wide -15-30 uterine branches per side -irregularly alternating genital pores
1170
Intestinal cestodes - *Taenia saginata* - ovum
-spherical -35-45 um -yellow or brown -thick radially striated shell
1171
Intestinal cestodes - *Taenia saginata* - intermediate host
cow
1172
Intestinal cestodes - *Taenia saginata* - transmission
ingestion of larva in undercooked beef
1173
Intestinal cestodes - *Taenia saginata* - diagnostic stage
ova in feces
1174
Intestinal cestodes - *Taenia saginata* - also called?
beef tapeworm
1175
True or False. *Taenia saginata* ova are infective to cattle, but not humnas.
True
1176
Intestinal cestodes - *Taenia solium* - scolex
-4 cup-shaped suckers -2 rows of hooklets around rounded rostellum
1177
Intestinal cestodes - *Taenia solium* - gravid proglottid
-longer than wide -7-13 uterine branches per side -regularly alternating genital pores
1178
Intestinal cestodes - *Taenia solium* - ovum
-spherical -35-45 um -yellow or brown -thick radially striated shell
1179
Intestinal cestodes - *Taenia solium* - intermediate host
pig
1180
Intestinal cestodes - *Taenia solium* - transmission
ingestion of larva in undercooked pork
1181
Intestinal cestodes - *Taenia solium* - diagnostic stage
ova in feces
1182
Intestinal cestodes - *Taenia solium* - also called?
pork tapeworm
1183
The ova of which intestinal cestode is infective to humans? A. *Taenia saginata* B. *Diphyllobothrium latum* C. *Taenia solium* D. *Echinococcus granulosus*
C. *Taenia solium*
1184
Intestinal cestodes - *Taenia solium* - causes?
cysticercosis
1185
Intestinal cestodes - *Diphyllobothrium latum* - scolex
-almond shaped -lateral groove on each side -no hooklets
1186
Intestinal cestodes - *Diphyllobothrium latum* - gravid proglottid
-wider than long -central rosette-shaped uterus
1187
Intestinal cestodes - *Diphyllobothrium latum* - ovum
-ovoid -45-70 um -yellow-brown -operculum -small knob at posterior
1188
Intestinal cestodes - *Diphyllobothrium latum* - intermediate host
1st: crustacean 2nd: fish
1189
Intestinal cestodes - *Diphyllobothrium latum* - transmission
ingestion of larva in undercooked freshwater fish
1190
Intestinal cestodes - *Diphyllobothrium latum* - diagnostic stage
ova in feces
1191
Intestinal cestodes - *Diphyllobothrium latum* - also called?
Broad fish tapeworm
1192
Intestinal cestodes - *Diphyllobothrium latum* - can cause?
vitamin B12 deficiency
1193
Intestinal cestodes - *Echinococcus granulosus* - transmission
ingestion of fecal material from infected dog or cat
1194
Intestinal cestodes - *Echinococcus granulosus* - diagnostic stage
radiologic ID of cysts in organs (liver/lungs) -can also ID with serology
1195
Intestinal cestodes - *Echinococcus granulosus* - accidental host?
humans
1196
Intestinal cestodes - *Hymenolepis nana* - scolex
-diamond-shaped -4 suckers -single row of hooklets around short rostellum
1197
Intestinal cestodes - *Hymenolepis nana* - gravid proglottid
-wider than long -uterine branches obliterated by eggs -3 ovoid irregularly spaced testes
1198
Intestinal cestodes - *Hymenolepis nana* - ovum
-round -40 um -colorless -2 distinct walls -slight bulge at each pole of inner wall with 4-8 hair-like polar filaments
1199
Intestinal cestodes - *Hymenolepis nana* - intermediate host
NONE
1200
Intestinal cestodes - *Hymenolepis nana* - transmission
ingestion of eggs in feces of infected mice/rats
1201
Intestinal cestodes - *Hymenolepis nana* - diagnostic stage
ova in feces
1202
Intestinal cestodes - *Hymenolepis nana* - also called?
Dwarf tapeworm
1203
Intestinal cestodes - *Hymenolepis nana* - adult
2.5-4 cm long
1204
What is the most common tapeworm?
*Hymenolepis nana*
1205
What is the only tapeworm without an intermediate host?
*Hymenolepis nana*
1206
Trematodes - *Fasciolopsis buski* - route of infection
ingestion of metacercariae on aquatic plants
1207
Trematodes - *Fasciolopsis buski* - location of adult
duodenum
1208
Trematodes - *Fasciolopsis buski* - diagnostic stage
-ova in feces -135 x 80 um -yellow-brown -thin shell -small operculum -granular contents evenly distributed -clear zone between shell & yolk
1209
Trematodes - *Fasciolopsis buski* - also called?
large intestinal fluke
1210
Trematodes - *Fasciolopsis buski* - symptoms of infection
bowel mucosal ulcers
1211
Trematodes - *Fasciola hepatica* - route of infection
ingestion of metacercariae on aquatic plants
1212
Trematodes - *Fasciola hepatica* -location of adult
bile duct
1213
Trematodes - *Fasciola hepatica* -diagnostic stage
Similar to *F. buski*: -ova in feces -135 x 80 um -yellow-brown -thin shell -small operculum -granular contents evenly distributed -clear zone between shell & yolk
1214
Trematodes - *Fasciola hepatica* -also called?
Sheep liver fluke
1215
Trematodes - *Clonorchis sinensis* - route of infection
ingestion of metacercariae in raw, undercooked, dried, salted, or pickled fish
1216
Trematodes - *Clonorchis sinensis* - location of adult
-bile ducts -gallbladder -pancreatic ducts
1217
Trematodes - *Clonorchis sinensis* - diagnostic stage
-ova in feces -29 x 16 um -bulbous -opercular shoulders -small comma-shaped protuberance at posterior -thick shell with tiny spines -ciliated miracidium inside
1218
Trematodes - *Clonorchis sinensis* - also called?
Chinese liver fluke
1219
True or False. *Clonorchis sinensis* eggs are one of the smallest passed by humans.
True
1220
True or False. *Clonorchis sinensis* eggs are one of the smallest passed by humans.
True
1221
Trematodes - *Paragonimus westermani* - route of infection
ingestion of undercooked crabs or crayfish
1222
Trematodes - *Paragonimus westermani* - location of adult
lungs
1223
Trematodes - *Paragonimus westermani* - diagnostic stage
-ova in feces or bloody sputum -80-120 um x 48-60 um -yellow-brown -thick shelled -flattened operculum
1224
Trematodes - *Paragonimus westermani* - also called?
Oriental lung fluke
1225
Trematodes - *Schistosoma mansoni* - route of infection
skin penetration
1226
Trematodes - *Schistosoma mansoni* - location of adults
intestinal venules
1227
Trematodes - *Schistosoma mansoni* - diagnostic stage
-ova in feces -elongated -155 x 65 um -pronounced lateral spine
1228
Trematodes - *Schistosoma mansoni* - also called?
Blood fluke
1229
Trematodes - *Schistosoma japonicum* - route of infection
skin penetration
1230
Trematodes - *Schistosoma japonicum* - location of adult
intestinal venules
1231
Trematodes - *Schistosoma japonicum* - diagnostic stage
-ova in feces or rectal biopsy -ovoid -90 x 70 um -minute lateral spine
1232
Trematodes - *Schistosoma japonicum* - also called?
Blood fluke
1233
Trematodes - *Schistosoma japonicum* - diagnosis (test)
serology
1234
Trematodes - *Schistosoma haematobium* - route of infection
skin penetration
1235
Trematodes - *Schistosoma haematobium* - location of adult
bladder venules
1236
Trematodes - *Schistosoma haematobium* - diagnostic stage
-ova in concentrated urine -elongated -140 x 60 um -terminal spine
1237
Trematodes - *Schistosoma haematobium* - also called?
Blood fluke
1238
What is the only parasite of urinary system?
*Schistosoma haematobium*
1239
Differentiation of *Plasmodium* - *P. falciparum* - name of disease
malignant malaria
1240
Differentiation of *Plasmodium* - *P. falciparum* - paroxysm cycle
36-48 hours
1241
Differentiation of *Plasmodium* - *P. falciparum* - infected RBCs
not enlarged
1242
Differentiation of *Plasmodium* - *P. falciparum* - stages seen
-ring forms (trophs) -gametocytes
1243
Differentiation of *Plasmodium* - *P. malariae* - name of disease
quartan malaria
1244
Differentiation of *Plasmodium* - *P. malariae* - paroxysm cycle
72 hours
1245
Differentiation of *Plasmodium* - *P. malariae* - infected RBCs
not enlarged
1246
Differentiation of *Plasmodium* - *P. malariae* - stages seen
all
1247
Differentiation of *Plasmodium* - *P. ovale* - name of disease
ovale malaria
1248
Differentiation of *Plasmodium* - *P. ovale* - paroxysm cycle
48 hours
1249
Differentiation of *Plasmodium* - *P. ovale* - infected RBCs
-sometimes enlarged -frequently oval with ragged margins -Schuffner dots
1250
Differentiation of *Plasmodium* - *P. ovale* - stages seen
all
1251
Differentiation of *Plasmodium* - *P. vivax* - name of disease
tertian malaria
1252
Differentiation of *Plasmodium* - *P. vivax* - paroxysm cycle
44-48 hours
1253
Differentiation of *Plasmodium* - *P. vivax* - infected RBCs
-enlarged -Schuffner dots
1254
Differentiation of *Plasmodium* - *P. vivax* - stages seen
all
1255
Differentiation of *Plasmodium* - *P. falciparum* - merozoites per mature schizont
not seen in peripheral blood
1256
Differentiation of *Plasmodium* - *P. malariae* - merozoites per mature schizont
6-12
1257
Differentiation of *Plasmodium* - *P. ovale* - merozoites per mature schizont
8-12
1258
Differentiation of *Plasmodium* - *P. vivax* - merozoites per mature schizont
12-24
1259
Differentiation of *Plasmodium* - *P. falciparum* - shape of gametocytes
sausage- or crescent-shaped
1260
Differentiation of *Plasmodium* - *P. malariae* - shape of gametocytes
ovoid
1261
Differentiation of *Plasmodium* - *P. ovale* - shape of gametocytes
round
1262
Differentiation of *Plasmodium* - *P. vivax* - shape of gametocytes
round
1263
Differentiation of *Plasmodium* - *P. falciparum* - multiple parasites per cell?
YES
1264
Differentiation of *Plasmodium* - *P. malariae* - multiple parasites per cell?
NO
1265
Differentiation of *Plasmodium* - *P. ovale* - multiple parasites per cell?
NO
1266
Differentiation of *Plasmodium* - *P. vivax* - multiple parasites per cell?
rare
1267
Differentiation of *Plasmodium* - *P. falciparum* - double chromatin dots?
YES
1268
Differentiation of *Plasmodium* - *P. falciparum* - double chromatin dots?
YES
1269
Differentiation of *Plasmodium* - *P. malariae* - double chromatin dots?
NO
1270
Differentiation of *Plasmodium* - *P. ovale* - double chromatin dots?
NO
1271
Differentiation of *Plasmodium* - *P. vivax* - double chromatin dots?
rare
1272
Differentiation of *Plasmodium* - *P. falciparum* - other characteristics
-high mortality -medical emergency
1273
Differentiation of *Plasmodium* - *P. malariae* - other characteristics
-rarely fatal -band-shaped trophs -similar morphology to newly emerging *P. knowlesi* species - differentiate by symptoms and PCR
1274
Differentiation of *Plasmodium* - *P. ovale* - other characteristics
-least common -rarely fatal -may cause relapses
1275
Which *Plasmodium* species is the least common?
*P. ovale*
1276
Differentiation of *Plasmodium* - *P. vivax* - other characteristics
-most common -rarely fatal -may cause relapses
1277
Which *Plasmodium* species is the most common?
*P. vivax*
1278
Blood and tissue protozoa - *Acanthamoeba* spp. - classification
ameba
1279
Blood and tissue protozoa - *Acanthamoeba* spp. - transmission
-swimming in contaminated water -inadequately disinfected contact lenses
1280
Blood and tissue protozoa - *Acanthamoeba* spp. - diagnosis
trophozoites and cysts from brain or skin biopsy or corneal scraping
1281
Blood and tissue protozoa - *Acanthamoeba* spp. - causes?
-granulomatous amebic encephalitis (GAE) -ulcerative acanthamoeba keratitis in contact lens wearers Usually in immunocompromised or debilitated
1282
Blood and tissue protozoa - *Naegleria fowleri* - classification
ameba
1283
Blood and tissue protozoa - *Naegleria fowleri* - transmission
swimming in contaminated ponds or streams
1284
Blood and tissue protozoa - *Naegleria fowleri* - diagnosis
-stained smears of culture material -trophs in CSF
1285
Blood and tissue protozoa - *Naegleria fowleri* - causes?
primary amebic meningoencephalitis (PAM)
1286
Blood and tissue protozoa - *Plasmodium* - classification
sporozoan
1287
Blood and tissue protozoa - *Plasmodium* - transmission
Anopheles mosquito
1288
Blood and tissue protozoa - *Plasmodium* - diagnosis
-Wright-stained thick & thin blood smears -draw blood just before paroxysm -rapid immunochromatographic dipsticks for antigen detection and fluorescent DNA/RNA stained films also used
1289
Blood and tissue protozoa - *Plasmodium* - causes?
malaria
1290
Blood and tissue protozoa - *Babesia* - classification
sporozoan
1291
Blood and tissue protozoa - *Babesia* - transmission
-tick bite -blood transfusion
1292
Blood and tissue protozoa - *Babesia* - diagnosis
-Wright-stained thick & thin blood smears -parasites in RBCs -2-4 um -trophozoites are usually pear-shaped, usually in pairs (most common) or tetrads
1293
Blood and tissue protozoa - *Babesia* - symptoms resemble?
malaria
1294
Blood and tissue protozoa - *Toxoplasma gondii* - classification
coccidian
1295
Blood and tissue protozoa - *Toxoplasma gondii* - transmission
-ingestion of undercooked meat or oocysts from cat feces -transplacental -organ transplants
1296
Blood and tissue protozoa - *Toxoplasma gondii* - diagnosis
-serological tests -ELISA -PCR
1297
Blood and tissue protozoa - *Toxoplasma gondii* - definitive host
cat
1298
Blood and tissue protozoa - *Toxoplasma gondii* - congenital infection
causes birth defects
1299
Blood and tissue protozoa - *Toxoplasma gondii* - AIDS patients
major cause of encephalitis
1300
Blood and tissue protozoa - *Leishmania* spp. complexes *L. tropica* (Old World), *L. mexicana* (New World), *L. braziliensis*, and *L. donovani* - classification
flagellate
1301
Blood and tissue protozoa - *Leishmania* spp. complexes *L. tropica* (Old World), *L. mexicana* (New World), *L. braziliensis*, and *L. donovani* - transmission
sand flies
1302
Blood and tissue protozoa - *Leishmania* spp. complexes *L. tropica* (Old World), *L. mexicana* (New World), *L. braziliensis*, and *L. donovani* - diagnosis
amastigote forms in WBCs & cells of the RE system
1303
Blood and tissue protozoa - *Leishmania* spp. complexes *L. tropica* (Old World), *L. mexicana* (New World), *L. braziliensis*, and *L. donovani* - what type of parasite?
obligate intracellular parasite
1304
Blood and tissue protozoa - *Leishmania* spp. complexes *L. tropica* (Old World), *L. mexicana* (New World), *L. braziliensis*, and *L. donovani* - causes?
Kalaazar, cutaneous & mucocutaneous leishmaniasis
1305
Blood and tissue protozoa - *Trypanosoma* - classification
flagellate
1306
Blood and tissue protozoa - *Trypanosoma* - transmission
-*T. brucei gambiense* & *T. brucei rhodesiense*: tsetse fly -*T. cruzi*: reduviid or kissing bug
1307
Blood and tissue protozoa - *Trypanosoma* - diagnosis
-*T. brucei gambiense* & *T. brucei rhodesiense*: trypomastigote in blood, lymph nodes, CSF -*T. cruzi*: trypomastigote in blood; amastigote in RE cells, myocardium, CNS
1308
Blood and tissue protozoa - *Trypanosoma* - *T. brucei rhodesiense* - causes?
East African sleeping sickness
1309
Blood and tissue protozoa - *Trypanosoma* - *T. brucei gambiense* - causes?
West African sleeping sickness
1310
Blood and tissue protozoa - *Trypanosoma* - *T. cruzi* - causes?
Chagas disease -found in Southern US
1311
Blood and tissue helminths - *Toxocara* - classification
nematode (in dogs/cats)
1312
Blood and tissue helminths - *Toxocara* - transmission
ingestion of eggs from dog/cat feces
1313
Blood and tissue helminths - *Toxocara* - diagnosis
serological tests
1314
Blood and tissue helminths - *Toxocara* - accidental hosts
humans
1315
Blood and tissue helminths - *Toxocara* - larvae location
tissues
1316
Blood and tissue helminths - *Toxocara* - causes?
visceral & ocular larva migrams (toxocariasis)
1317
Blood and tissue helminths - *Trichinella spiralis* - classification
nematode
1318
Blood and tissue helminths - *Trichinella spiralis* - transmission
undercooked pork -bear
1319
Blood and tissue helminths - *Trichinella spiralis* - diagnosis
-larvae encysted in muscle -serological tests (ELISA)
1320
Blood and tissue helminths - *Trichinella spiralis* - symptoms
-eosinophilia -edema of upper eyelids -fever -myalgia
1321
Blood and tissue helminths - *Wuchereria bancrofti* - classification
nematode
1322
Blood and tissue helminths - *Wuchereria bancrofti* - transmisson
mosquitos
1323
Blood and tissue helminths - *Wuchereria bancrofti* - diagnosis
-microfilariae in blood -Giemsa-stained thick & thin smears
1324
Blood and tissue helminths - *Wuchereria bancrofti* - causes?
chronic infection causes elephantiasis (lymphatic filariasis)
1325
Blood and tissue helminths - *Brugia malayi* - classification
nematode
1326
Blood and tissue helminths - *Brugia malayi* - transmission
mosquitos
1327
Blood and tissue helminths - *Brugia malayi* - diagnosis
-microfilariae in blood -Giemsa-stained thick & thin smears
1328
Blood and tissue helminths - *Brugia malayi* - causes?
elephantiasis
1329
Blood and tissue helminths - *Brugia malayi* - periodicity
nocturnal
1330
Blood and tissue helminths - *Loa loa* - classification
nematode
1331
Blood and tissue helminths - *Loa loa* - transmission
Mango fly (*Chrysops*)
1332
Blood and tissue helminths - *Loa loa* - diagnosis
-microfilariae in blood -Giemsa-stained thick & thin smears
1333
Blood and tissue helminths - *Loa loa* - also called?
African eye worm
1334
Blood and tissue helminths - *Loa loa* - periodicity
nocturnal
1335
Blood and tissue helminths - *Onchocerca volvulus* - classification
nematode
1336
Blood and tissue helminths - *Onchocerca volvulus* - transmission
Black fly
1337
Blood and tissue helminths - *Onchocerca volvulus* - diagnosis
-microfilariae from skin snips or aspirates of fibrous nodules on body
1338
Blood and tissue helminths - *Onchocerca volvulus* - causes?
River blindness
1339
Stains used in mycology - KOH - used for?
-skin -hair -nails
1340
Stains used in mycology - KOH - dissolves?
keratin
1341
Stains used in mycology - KOH - function
makes fungal elements more visible
1342
Stains used in mycology - Calcofluor white - used for
-tissues -sputum -body fluids -skin scrapings -corneal scrapings
1343
Stains used in mycology - Calcofluor white - type of stain
fluorescent stain, optimal fluorescence occurs with UV excitation
1344
Stains used in mycology - Lactophenol cotton blue - used for
microscopic exam of fungal culture
1345
Stains used in mycology - Lactophenol cotton blue - function
-lactic acid = preserves -phenol = kills -cotton blue = stains
1346
Stains used in mycology - Gram stain - used for
yeast
1347
Stains used in mycology - Gram stain - does fungi stain gram positive or gram negative?
gram positive
1348
Stains used in mycology - Acid-fast - used for
*Nocardia* (partially acid-fast)
1349
Stains used in mycology - Colloidal carbon wet mount (India ink) - used for
CSF sediment if *Cryptococcus* is suspected
1350
Stains used in mycology - Colloidal carbon wet mount (India ink) - diagnosis
halos around yeast due to wide capsule -insensitive -direct antigen test preferred
1351
Stains used in mycology - Giemsa - used for
blood & bone marrow
1352
Stains used in mycology - Giemsa -useful for?
*Histoplasma*
1353
List the fungal culture media used for isolation.
1. Sabouraud dextrose agar (SDA) 2. SDA with antibiotics 3. Brain-heart infusion agar 4. Inhibitory mold agar 5. Dermatophyte test medium
1354
List the fungal culture media used for identification.
1. Potato dextrose agar 2. Cornmeal agar with Tween 80 3. Urea agar 4. Birdseed agar (niger seed or caffeic agar) 5. Chromogenic agar
1355
Fungal culture media - for isolation - Sabouraud dextrose agar (SDA) - use
-general medium -pH 5.6 inhibits bacteria -grows most molds & yeasts -can also be made with glucose (SGA)
1356
Fungal culture media - for isolation - Sabouraud dextrose agar (SDA) with antibiotics- use
-antibiotics inhibit fungal contaminants & bacteria -dermatophytes & most fungal pathogens grow
1357
Fungal culture media - for isolation - Brain-heart infusion agar - use
-used for the isolation of all fungi including fastidious dimorphic fungi -10% sheep blood is added for enrichment -antibiotics can be added to make the medium selective by inhibiting bacteria
1358
Fungal culture media - for isolation - Inhibitory mold agar - use
-for recovery of fungi from specimens contaminated with bacteria -contains chloramphenicol & gentamicin to inhibit bacteria -more sensitive than SDA
1359
Fungal culture media - for isolation - Dermatophyte test medium - use
-for recovery of dermatophytes from skin, hair, and nails -turn agar from yellow to red -antibiotics added to inhibit bacteria
1360
Fungal culture media - for identification - Potato dextrose agar - use
-stimulates sporulation of molds -good for slide cultures
1361
Fungal culture media - for identification - Cornmeal agar with Tween 80 - use
-allows for enhanced formation of hyphae, blastospores, & chlamydoconidia, to differentiate *Candida* species -*C. albicans* produces chlamydospores
1362
Fungal culture media - for identification - Urea agar - use
detects urease for presumptive ID of *Cryptococcus* and *Trichophyton*
1363
Fungal culture media - for identification - Birdseed agar (niger seed or caffeic agar) - use
-isolation of *Cryptococcus* species -black-brown colonies in 4-7 days
1364
Fungal culture media - for identification - Chromogenic agar - use
-allows rapid ID and detection -contains chromogenic substrates hydrolyzed by species-specific enzymes
1365
Dermatophytes - *Microsporum* - infects
-skin -hair -rarely nails
1366
Dermatophytes - *Microsporum* -macroconidia
-large -spindle or cylinder shaped -thick walled -multi-septate -rough -spiny -borne singly on short conidiophores
1367
Dermatophytes - *Microsporum* -microconidia
-few or absent -small, club shaped
1368
Dermatophytes - *Microsporum* -hair
-ectothrix hair invasion -some species cause hair to fluoresce under UV light
1369
Dermatophytes - *Microsporum* -lab ID
direct microscopic examination
1370
Dermatophytes - *Microsporum* -most common species
-*M. canis* -*Nannizzia gypsea* -*M. audouinii*
1371
Dermatophytes - *Trichophyton* -infects
-hair -skin -nails
1372
Dermatophytes - *Trichophyton* -macroconidia
-rare -pencil shaped -multiseptate -thin walled -smooth -borne singly on conidiophore
1373
Dermatophytes - *Trichophyton* -microconidia
-predominant -spherical, tear shaped, or clavate
1374
Dermatophytes - *Trichophyton* -hair
-hair infections endothrix or ectothrix -hair usually doesn't fluoresce
1375
Dermatophytes - *Trichophyton* -other characteristics
may have spirals, nodular bodies, chlamydospores, faviform mycelia
1376
Dermatophytes - *Trichophyton* -*T. rubrum* colonies on agar
red on reverse side
1377
Dermatophytes - *Trichophyton* -most common species
-*T. mentagrophytes* -*T. rubrum* -*T. tonsurans*
1378
Which dermatophytes cause epidemic tinea capitis in children?
*T. tonsurans and *M. audouinii*
1379
Dermatophytes - *Epidermophyton* - infects
-skin -sometimes nails -rarely hair
1380
Dermatophytes - *Epidermophyton* - macroconidia
-club shaped -septate -thin walled -smooth -borne in singles or clusters of 2-3 per conidiophore
1381
Dermatophytes - *Epidermophyton* - microconidia
absent
1382
Dermatophytes - *Epidermophyton* - chlamydospores
numerous
1383
Dermatophytes - *Epidermophyton* - most common species
*E. floccosum* is the only species
1384
Dermatophytes - identification
-colony characteristics on SGA and microscopic morphology -MALDI-TOF
1385
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - infection
blastomycosis
1386
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - mold phase
-white to gray-brown colony -hyaline, septate hyphae with small oval conidia borne singly at tips of conidiophores -"Lollipops"
1387
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - yeast phase
-8-15 um -round, thick walled -single bud connected by wide neck
1388
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - endemic
Ohio & Mississippi River valleys
1389
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - most commonly infected
farmers - contract from soil
1390
Dimorphic fungi - *Blastomyces* spp. (i.e., *dermatitidis*) - infection location
-begins in lungs -may become systemic
1391
Dimorphic fungi - *Paracoccidioides* spp. (i.e., *brasiliensis*) - infection
paracoccidioidomycosis
1392
Dimorphic fungi - *Paracoccidioides* spp. (i.e., *brasiliensis*) - mold phase
resembles *Blastomyces*: -white to gray-brown colony -hyaline, septate hyphae with small oval conidia borne singly at tips of conidiophores -"Lollipops"
1393
Dimorphic fungi - *Paracoccidioides* spp. (i.e., *brasiliensis*) - yeast phase
-10-30 um -round, double walled -multiple buds pinched at attachment -"Mariner's wheel"
1394
Dimorphic fungi - *Paracoccidioides* spp. (i.e., *brasiliensis*) - mainly found
-Brazil -Argentina -S. Mexico
1395
Dimorphic fungi - *Paracoccidioides* spp. (i.e., *brasiliensis*) - infection location
-begins in lungs -can become systemic
1396
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - infection
Valley fever
1397
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - mold phase
-fluffy or powdery white to gray-tan colonies -barrel-shaped arthrospores
1398
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - yeast phase
-spherule -20-80 um -contains numerous endospores
1399
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - where is it found
California and fixed desert of Southwest US
1400
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - primarily infects
diagnosed more in males than females (15:1 ratio)
1401
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - how does it infect
-spores are inhaled or contaminate injured skin -affects respiratory tract 1st -can spread to other organs
1402
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - highly infectious
arthrospores
1403
Dimorphic fungi - *Coccidioides* spp. (*C. immitis* and C. posadasii*) - diagnosis
serological tests
1404
Dimorphic fungi - *Histoplasma capsulatum* - infection
Histoplasmosis
1405
Dimorphic fungi - *Histoplasma capsulatum* - mold phase
-silky, white to gray-tan colonies -thick-walled spherical macroconidia, 7-16 um, surrounded by finger-like projections -"Tuberculate chlamydospores"
1406
Dimorphic fungi - *Histoplasma capsulatum* - yeast phase
-1-4 um -round to oval -intracellular in phagocytes of blood or bone marrow
1407
Dimorphic fungi - *Histoplasma capsulatum* - endemic
Ohio & mississippi River valleys
1408
Dimorphic fungi - *Histoplasma capsulatum* - where does it grow
(Soil saprophyte) -grows best in soils enriched with bird or bat droppings
1409
Dimorphic fungi - *Histoplasma capsulatum* - infection location
acute pulmonary disease (esp. dangerous to immunocompromised) -predilection for RE system
1410
Dimorphic fungi - *Sporothrix schenckii* - infection
Sporotrichosis (rose gardener's disease)
1411
Dimorphic fungi - *Sporothrix schenckii* - mold phase
-white to yellow colonies -clusters of pear-shaped conidia at tips of conidiophores -"flowers"
1412
Dimorphic fungi - *Sporothrix schenckii* - yeast phase
-gram positive -cigar-shaped cells -usually not seen in direct smears unless by immunofluorescence
1413
Dimorphic fungi - *Sporothrix schenckii* - endemic
Mississippi & Missouri River valleys
1414
Dimorphic fungi - *Sporothrix schenckii* - where does it grow
-rose bushes -barberry bushes -sphagnum moss -mulch
1415
Dimorphic fungi - *Sporothrix schenckii* - usually infects
farmers or florists -introduced by trauma, usually to the hand
1416
Dimorphic fungi - *Sporothrix schenckii* - cutaneous lesions
spread along lymphatics
1417
Yeast - *Candida albicans* - infections
-thrush (mouth) -vulvovaginitis -diaper rash -onychomycosis (nails) -paronychomycosis (cuticles) -endocarditis -meningitis -UTI -pulmonary infections -candidemia
1418
Yeast - *Candida albicans* - important characteristics - agar type
grows on SBA, EMB (spider-like projections), SDA
1419
Yeast - *Candida albicans* - important characteristics - gram stain
gram positive cells, 2-4 um
1420
Yeast - *Candida albicans* - important characteristics - conidia
blastoconidia or pseudohyphae (no constrictions)
1421
Yeast - *Candida albicans* - important characteristics - serum
produces germ tubes
1422
Yeast - *Candida albicans* - important characteristics - cornmeal agar
produces round terminal chlamydospores
1423
Yeast - *Candida albicans* - important characteristics - agar used for ID
chromogenic agar
1424
Yeast - *Candida albicans* - normal flora of
-GI tract -mucocutaneous areas
1425
Yeast - *Candida albicans* - AIDS
-onychomycosis (nails) -esophagitis
1426
Yeast - *Candida albicans* - tests available for ID
-serological (antigen & antibody) -nucleic acid tests
1427
Yeast - *Candida tropicalis* - infections
-vaginitis -UTI -GI -pulmonary -systemic infections
1428
Yeast - *Candida tropicalis* - cornmeal agar
blastoconidia produced randomly along pseudohyphae
1429
Yeast - *Candida tropicalis* - germ tubes
may produce constricted germ tubes (true germ tubes lack constrictions)
1430
Yeast - *Candida tropicalis* - usually infects
immunosuppressed
1431
Yeast - *Candida glabrata* - infections
-UTI -systemic infections
1432
Yeast - *Candida glabrata* - important characteristics
-no true- or pseudomycelium -small budding cells only
1433
Yeast - *Candida glabrata* - often resistant to?
fluconazole
1434
Which yeast is the predominant non-*C. albicans* cause of candidemia?
*C. glabrata*
1435
Yeast - *Candida krusei* - infections
-endocarditis -ocular
1436
Yeast - *Candida krusei* - important characteristics
-forms true/pseudophyphae -does not produce germ tube
1437
Yeast - *Candida krusei* - resistant to?
fluconazole
1438
Yeast - *Geotrichum candidum* - infections
uncommon cause of wound infections & oral thrush
1439
Yeast - *Geotrichum candidum* - cornmeal agar
forms hockey stick-shaped arthroconidia
1440
Yeast - *Geotrichum candidum* - blastoconidia
none
1441
True or False. *Geotrichum candidum* is not actually a yeast, but rather a yeast-like organism.
True
1442
Yeast - *Cryptococcus neoformans* - infections
lung infections that can disseminate to brain
1443
Yeast - *Cryptococcus neoformans* - cells
-irregularly sized -spherical -surrounded by a capsule
1444
Yeast - *Cryptococcus neoformans* - niger seed agar
maroon to brown-black colonies
1445
Yeast - *Cryptococcus neoformans* - urease, phenol oxidase
positive
1446
Yeast - *Cryptococcus neoformans* - found
-bird & bat droppings -decaying vegetation -fruit -milk
1447
Yeast - *Cryptococcus neoformans* - India Ink prep
capsule seen in about 50% of cases
1448
Yeast - *Cryptococcus neoformans* - AIDS
disseminated cryptococcosis
1449
Yeast - *Malassezia furfur* - infections
Tinea versicolor
1450
Yeast - *Malassezia furfur* - cells
-oval or bottle-shaped budding yeast -3-8 um in diameter -characteristic collar between mother & daughter cells
1451
Yeast - *Malassezia furfur* - skin scrapings
chains of short, slightly curved septate hyphae may be seen
1452
Yeast - *Malassezia furfur* - lab ID
KOH prep of skin scrapings
1453
Yeast - *Pneumocystis jirovecii* - infections
atypical interstitial plasma cell pneumonia (PCP)
1454
Yeast - *Pneumocystis jirovecii* - cysts
cysts are 4-12 um spheres with intracystic bodies
1455
Yeast - *Pneumocystis jirovecii* - culture
can't be cultured
1456
Yeast - *Pneumocystis jirovecii* - diagnosis
histopathological staining
1457
Yeast - *Pneumocystis jirovecii* - opportunistic infection
-preterm infants -immunocompromised
1458
Contaminants/Opportunistic Fungi - *Rhizopus* - classification
mucorales
1459
Contaminants/Opportunistic Fungi - *Rhizopus* - significance
-common lab contaminant -propensity to attack vascular system of immunocompromised -rapidly spreading -often fatal
1460
Contaminants/Opportunistic Fungi - *Rhizopus* - colonial morphology
-mature within 4 days -"Lid lifter" -FRONT: dense cotton candy-like growth, white at first, turning gray or yellow-brown -REVERSE: white
1461
Contaminants/Opportunistic Fungi - *Rhizopus* - microscopic morphology
-Hyphae: large, broad, nonseptate -produces horizontal stolons that attach by rhizoids -sporangiophores in clusters opposite rhizoids -terminate in dark, round sporangia containing sporangiospores
1462
Contaminants/Opportunistic Fungi - *Mucor* - classification
Mucorales
1463
Contaminants/Opportunistic Fungi - *Mucor* - significance
-common lab contaminant -propensity to attack vascular system of immunocompromised -rapidly spreading -often fatal
1464
Contaminants/Opportunistic Fungi - *Mucor* - colonial morphology
-mature within 4 days -"Lid lifter" -FRONT: dense cotton candy-like growth, white at first, turning gray -REVERSE: white
1465
Contaminants/Opportunistic Fungi - *Mucor* - microscopic morphology
-Hyphae: large, broad, nonseptate -produces horizontal stolons -sporangiophores in clusters or branched -NO rhizoids -terminate in dark, round sporangia containing sporangiospores
1466
Contaminants/Opportunistic Fungi - *Aspergillus* - classification
hyaline
1467
Contaminants/Opportunistic Fungi - *Aspergillus* - most common species
*A. fumigatus*
1468
Contaminants/Opportunistic Fungi - *Aspergillus* - significance
-common contaminant -can cause invasive infection, colonization, toxicosis, allergy
1469
Contaminants/Opportunistic Fungi - *Aspergillus* - colonial morphology
-mature within 3 days -FRONT: fluffy, granular, or powdery texture; white at first, then color depends on species: *A. fumigatus* - white to blue-green *A. niger* - black *A. flavus* - yellow to green *A. terreus* - tan to cinnamon -REVERSE: white, goldish, or brown
1470
Contaminants/Opportunistic Fungi - *Aspergillus* - microscopic morphology
-septate hyphae, branching at 45* angle -unbranched conidiophore arises from foot cell -expands into large, spherical vesicle covered with phialides that produce chains of round conidia
1471
Contaminants/Opportunistic Fungi - *Acremonium* - classification
hyaline mold
1472
Contaminants/Opportunistic Fungi - *Acremonium* - significance
-can be a contaminant -can cause mycetoma, corneal & nail infections
1473
Contaminants/Opportunistic Fungi - *Acremonium* - colonial morphology
-mature within 5 days -FRONT: white, spreading, moist, colorless; becomes cottony with gray top -REVERSE: yellow or rose
1474
Contaminants/Opportunistic Fungi - *Acremonium* - microscopic morphology
-small, hyaline, septate hyphae -unbranched phialides -oblong, 1- to 2-celled conidia in clusters at tips of phialides
1475
Contaminants/Opportunistic Fungi - *Fusarium* - classification
hyaline mold
1476
Contaminants/Opportunistic Fungi - *Fusarium* - significance
-can be a contaminant -can cause eye, skin, nail, systemic infections
1477
Contaminants/Opportunistic Fungi - *Fusarium* - colonial morphology
-mature within 4 days -FRONT: white & cottony, developing a pink or violet center -REVERSE: light
1478
Contaminants/Opportunistic Fungi - *Fusarium* - microscopic morphology
-septate hyphae -unbranched conidiophores -large, canoe-shaped, multiseptate macroconidia -small 1- to 2-celled oval or cylindrical conidia in singles or clusters on simple conidiophores
1479
Contaminants/Opportunistic Fungi - *Penicillium* - classification
hyaline mold
1480
Contaminants/Opportunistic Fungi - *Penicillium* - significance
-can be a contaminant -can cause keratitis, external ear infections, endocarditis with artificial heart valves
1481
Contaminants/Opportunistic Fungi - *Penicillium* - colonial morphology
-matures within 4 days -FRONT: white at first; becomes powdery, blue-green with white border -REVERSE: usually white
1482
Contaminants/Opportunistic Fungi - *Penicillium* - microscopic morphology
-septate hyphae -branched or unbranched conidiophores -"brush-like" -flask-shaped phialides bearing unbranched chains of round conidia
1483
Contaminants/Opportunistic Fungi - *Alternaria* - classification
Dematiaceous
1484
Contaminants/Opportunistic Fungi - *Alternaria* - significance
-can be contaminant -can cause subcutaneous infection
1485
Contaminants/Opportunistic Fungi - *Alternaria* - colonial morphology
-mature within 5 days -FRONT: gray-white & wooly at first; becomes green-black or brown with light border -REVERSE: black
1486
Contaminants/Opportunistic Fungi - *Alternaria* - microscopic morphology
-dark septate hyphae -conidiophores of variable length, sometimes branched -large brown, drumstick-shaped conidia with transverse & longitudinal septations, in singles or chains
1487
Contaminants/Opportunistic Fungi - *Cladosporium* - classification
Dematiaceous
1488
Contaminants/Opportunistic Fungi - *Cladosporium* - significance
non-pathogenic
1489
Contaminants/Opportunistic Fungi - *Cladosporium* - colonial morphology
-mature within 7 days -FRONT: green-brown or black with velvety nap; becomes heaped & slightly folded -REVERSE: black
1490
Contaminants/Opportunistic Fungi - *Cladosporium* - microscopic morphology
-dark septate hyphae -dark branching conidiophores producing 2 or more chains of oval brown conidia
1491
Contaminants/Opportunistic Fungi - *Curvularia* - classification
Dematiaceous
1492
Contaminants/Opportunistic Fungi - *Curvularia* - significance
-can be a contaminant -can cause sinusitis, keratitis
1493
Contaminants/Opportunistic Fungi - *Curvularia* - colonial morphology
-mature within 5 days -FRONT: dark olive green to brown or black with pink-gray wooly surface -REVERSE: black
1494
Contaminants/Opportunistic Fungi - *Curvularia* - microscopic morphology
-dark septate hyphae -simple or branched conidiophores, bent where conidia attach -large, 4-celled, curved conidia -central cell is larger & darker
1495
Fungal pathogens by site - blood/bone marrow
-*Histoplasma capsulatum* *Cryptococcus neoformans* -*Candida* spp. -*Blastomyces dermatitidis* -*Malassezia furfur*
1496
Fungal pathogens by site - CSF
-*Cryptococcus neoformans* -*Coccidioides* spp. -*Histoplasma capsulatum* -*Candida* spp.
1497
Fungal pathogens by site - hair
-*Trichophyton* -*Microsporum*
1498
Fungal pathogens by site - nail
-*Trichophyton* -*Epidermophyton* -*Candida* -*Aspergillus*
1499
Fungal pathogens by site - sputum, bronchial washings, transtracheal aspirates
-*Candida* -*Aspergillus* -*Rhizopus* -*Mucor* -*Penicillium* -*Blastomyces dermatitidis* -*Coccidioides* spp. -*Paracoccidioides brasiliensis* -*Histoplasma capsulatum* -*Sporothrix schenckii*
1500
Fungal pathogens by site - skin
-*Candida* -*Trichophyton* -*Microsporum* -*Epidermophyton*
1501
Fungal pathogens by site - throat
*Candida albicans*
1502
Fungal pathogens by site - urine
-*Candida* -*Blastomyces dermatitidis* -*Coccidioides* spp. -*Histoplasma capsulatum* -*Cryptococcus neoformans*
1503
Fungal pathogens by site - vaginal/cervical
*Candida albicans*
1504
Viral structure
1. virion 2. nucleocapsid 3. nucleic acid 4. capsid 5. envelope
1505
Viral structure - virion
complete virus particle
1506
Viral structure - nucleocapsid
nucleic acid & capsid
1507
Viral structure - nucleic acid
-DNA or RNA -single- or double-stranded -linear or circular
1508
Viral structure - capsid
-protein coat that encloses genetic material -may be helical (rod-like) or icosahedral (cuboid) -composed of protein subunits called capsomers -protects nucleic acid -enables virus to attach to & enter host cell
1509
Viral structure - envelope
-outer membrane surrounding capsid in some viruses -aids in attachment to host cell -viruses without called naked nucleocapsids
1510
Viral replication - adsorption
attachment of virus to host cell receptor
1511
Viral replication - penetration
virus enters host cell by direct penetration, endocytosis (entering in a vacuole), or fusion with cell membrane
1512
Viral replication - eclipse/synthesis
-eclipse: several hours during which virions can't be detected -synthesis: mRNA is produced; directs synthesis of viral particles
1513
Viral replication - uncoating
-loss of capsid -genome enters cytoplasm (most RNA viruses) or nucleus (most DNA viruses)
1514
Viral replication - maturation/release
-genetic material assembled into protein coat-virions migrate to cytoplasmic membrane -released by budding off, leaking out, or lysing host cell with enzymes
1515
Human DNA viruses - Adenoviruses - representative viruses
-adenoviruses ->60 serotypes divided into subgroups
1516
Human DNA viruses - Adenoviruses - infections
-mild respiratory, urinary tract, GI, & eye infections -can cause highly contagious pink eye (conjunctivitis)
1517
Human DNA viruses - Hepadnaviruses - representative viruses
HBV
1518
Human DNA viruses - Hepadnaviruses - infections
Hepatitis B
1519
Human DNA viruses - Herpes viruses - representative viruses
-Herpes simplex viruses (HSV-1, HSV-2) -Varicella-zoster virus (VZV) -Epstein-Barr virus (EBV) -Cytomegalovirus(CMV) -Human herpesviruses 6-8
1520
Human DNA viruses - Herpes viruses - infections
-Herpes simplex viruses (HSV-1, HSV-2): oral, genital, neonatal, & ocular herpes, HSV encephalitis -Varicella-zoster virus (VZV): Chicken pox (varicella), shingles (zoster) -Epstein-Barr virus (EBV): infectious mononucleosis -Cytomegalovirus(CMV): infections in newborns & immunocompromised -Human herpesviruses 6-8: Roseola, Kaposi sarcoma
1521
Human DNA viruses - Papillomaviruses - representative viruses
Human papilloma virus (HPV)
1522
Human DNA viruses - Papillomaviruses - infections
warts, including genital warts that are linked to cervical cancer
1523
Human DNA viruses - Parvoviruses - representative viruses
Parvovirus B19
1524
Human DNA viruses - Parvoviruses - infections
Fifth disease (erythema infectiosum)
1525
Human DNA viruses - Poxviruses - representative viruses
Variola
1526
Human DNA viruses - Poxviruses -infections
Smallpox
1527
Human RNA viruses - Arenaviruses - representative viruses
-Lymphocyte choriomeningitis virus (LCM) -Lassa fever virus
1528
Human RNA viruses - Arenaviruses - infections
-LCM: aseptic meningitis or meningoencephalitis -Lassa fever virus: Lassa fever
1529
Human RNA viruses - Astroviruses - representative viruses
Astrovirus
1530
Human RNA viruses - Astroviruses - infections
gastroenteritis in children, elderly, and immunocompromised
1531
Human RNA viruses - Hantaviridae - representative viruses
Hantavirus (Sin Nombre virus)
1532
Human RNA viruses - Hantaviridae - infections
Hantavirus pulmonary syndrome (HPS)
1533
Human RNA viruses - Caliciviruses - representative viruses
Noroviruses
1534
Human RNA viruses - Caliciviruses - infections
most common cause of infectious gastroenteritis in the US
1535
Human RNA viruses - Coronaviruses - representative viruses
Coronavirus
1536
Human RNA viruses - Coronaviruses - infections
-severe acute respiratory syndrome (SARS) -cold-like infections -pediatric diarrhea -COVID-19
1537
Human RNA viruses - Filoviruses - representative viruses
-Marburg -Ebola
1538
Human RNA viruses - Filoviruses - infections
hemorrhagic fever
1539
Human RNA viruses - Filoviruses - infections
hemorrhagic fever
1540
Human RNA viruses - Flaviviruses - representative viruses
-Yellow fever virus -Japanese encephalitis virus -dengue virus -West Nile virus -Zika virus (Note: above viruses are arboviruses - arthropod-borne viruses) -Hepatitis C virus (HCV)
1541
Human RNA viruses - Flaviviruses - infections
-Yellow fever virus: yellow fever -Japanese encephalitis virus: Japanese encephalitis -dengue virus: dengue fever -West Nile virus: West Nile virus infection -Zika virus: Zika (Note: above viruses are arboviruses - arthropod-borne viruses) -Hepatitis C virus (HCV): Hepatitis C
1542
Human RNA viruses - Orthomyxoviruses - representative viruses
Influenzae A, B, & C
1543
Human RNA viruses - Orthomyxoviruses - infections
Influenzae
1544
Human RNA viruses - Paramyxoviruses - representative viruses
-Measles virus -Mumps virus -Parainfluenza virus -Respiratory syncytial virus (RSV) -Human metapneumovirus (HMPV)
1545
Human RNA viruses - Paramyxoviruses - infections
-Measles virus: measles (rubeola) -Mumps virus: mumps -Parainfluenza virus: RTI in children -Respiratory syncytial virus (RSV): RTI in infants, elderly, immunocompromised -Human metapneumovirus (HMPV): RTI
1546
Human RNA viruses - Picornaviruses - representative viruses
-Enteroviruses (polioviruses, coxsackieviruses A & B, echoviruses, enteroviruses) -Hepatitis A virus (HAV) -Rhinovirus
1547
Human RNA viruses - Picornaviruses - infections
-Enteroviruses (polioviruses, coxsackieviruses A & B, echoviruses, enteroviruses): Polio, hand-foot-mouth disease, aseptic meningitis, others -Hepatitis A virus (HAV): Hepatitis A -Rhinovirus: common cold
1548
Human RNA viruses - Reoviruses - representative viruses
Rotavirus
1549
Human RNA viruses - Reoviruses - infections
Rotavirus: most common cause of gastroenteritis in infants & children
1550
Human RNA viruses - Retroviruses - representative viruses
-HIV-1, HIV-2 -Human T-lymphotropic viruses (HTLV-1, HTLV-2)
1551
Human RNA viruses - Retroviruses - infections
-HIV-1, HIV-2: AIDS -Human T-lymphotropic viruses (HTLV-1, HTLV-2): T-cell leukemia & lymphoma, tropical spastic paraparesis
1552
Human RNA viruses - Rhabdoviruses - representative viruses
Rabies virus
1553
Human RNA viruses - Rhabdoviruses - infections
Rabies virus: rabies
1554
Human RNA viruses - Togaviruses - representative viruses
-Rubella virus -Eastern, Western, & Venezuelan equine encephalitis viruses
1555
Human RNA viruses - Togaviruses - infections
-Rubella virus: rubella (German measles) -Eastern, Western, & Venezuelan equine encephalitis viruses: Eastern, Western, & Venezuelan encephalitis
1556
Common viruses by site - CNS - specimens
-CSF -throat swab -stool -brain tissue -blood
1557
Common viruses by site - CNS - common viruses
-Enteroviruses -HSV -arboviruses
1558
Common viruses by site - Eye - specimens
-conjunctival swab -corneal scraping
1559
Common viruses by site - Eye - common viruses
-HSV -adenoviruses
1560
Common viruses by site - Genital tract - specimens
-genital swab -vesicle swab or fluid -lesion biopsy
1561
Common viruses by site - Genital tract - common viruses
-HSV -HPV
1562
Common viruses by site - GI tract - specimens
-stool -rectal swab
1563
Common viruses by site - GI tract - common viruses
Adults: noroviruses, adenoviruses, enteroviruses Infants/children: rotavirus, adenoviruses
1564
Common viruses by site - Respiratory tract - specimens
-nasal aspirate -throat swab -nasopharyngeal swab -bronchoalveolar lavage -lung biopsy
1565
Common viruses by site - Respiratory tract - common viruses
-Influenzae A & B -parainfluenza virus -adenoviruses -RSV -HMPV -rhinovirus -enteroviruses -coronavirus
1566
Common viruses by site - Skin - specimens
vesicle fluid or scrapings
1567
Common viruses by site - Skin - common viruses
-HSV -VZV -measles -rubella -enterovirus -parvovirus B19
1568
Common viruses by site - Skin - common viruses
-HSV -VZV -measles -rubella -enterovirus -parvovirus B19
1569
Common viruses by site - Urinary tract - specimens
urine
1570
Common viruses by site - Urinary tract - common viruses
-adenoviruses -HSV -CMV
1571
Viral specimen collection and transport - time of collection
during acute phase (1st 3-5 days)
1572
Viral specimen collection and transport - site of collection
site of infection, entry & exit sites
1573
Viral specimen collection and transport - collection containers
sterile, leak-proof, nonbreakable
1574
Viral specimen collection and transport - swabs
-dacron -rayon -other polyester tips -plastic or aluminum shafts -calcium alginate, cotton, wood are inhibitory for some viruses
1575
Viral specimen collection and transport - transport media
-VTM -Amies -Stuart transport media (NOT required for blood, CSF, or urine)
1576
Viral specimen collection and transport - transport
-deliver immediately -if not possible, keep at 2-8*C & deliver within 2 hours -EXCEPTION: keep whole blood at room temperature
1577
Viral specimen collection and transport - storage
-best to process upon arrival -if not possible, hold at 2-8*C for up to 48 hours ->48 hours, freeze at -70*C (not recommended)
1578
Methods for diagnosis of viral infections - cytology/histology
microscopic examination of specimen for viral cytopathic effect (CPE)
1579
Methods for diagnosis of viral infections - electron microscopy
-rarely used -labor intensive, expensive
1580
Methods for diagnosis of viral infections - direct fluorescent antibody stain
-fluorescent-labeled antibody added to patient cells fixed to slide -if viral antigen present, antibody binds -fluorescence seen with fluorescent microscope
1581
Methods for diagnosis of viral infections - antigen detection
solid-phase & membrane ELISAs
1582
Methods for diagnosis of viral infections - shell vial culture
-rapid modification of conventional cell culture -detection in 1-2 days -specimen centrifuged onto monolayer of cells growing on coverslip -coverslips stained with viral-specific immunofluorescent conjugate -used primarily by reference labs
1583
Methods for diagnosis of viral infections - molecular methods
-PCR -real-time PCR -branched DNA -nucleic acid hybridization -faster & more sensitive than cell culture -can detect multiple viruses simultaneously
1584
Methods for diagnosis of viral infections - serology
-detects antibodies in serum -presence of antibodies isn't always indicative of current infection -useful in evaluating immune status or diagnosing -alternatively, can detect antigen from swabbed site
1585
Which of the following specimen collection scenarios would be cause for rejection? A. use of JEMBEC plate for *Neisseria gonorrhoeae* B. the use of calcium alginate swab for *Chlamydia* C. collection tubes with boric acid for urine culture D. viral swab collected during acute infection
B. the use of calcium alginate swab for *Chlamydia*
1586
Select the media of choice for culturing fastidious organisms such as *Haemophilus* & *Neisseria*. A. MAC agar B. Hektoen agar C. CHOC agar D. Eosin methylene blue agar
C. CHOC agar
1587
Xylose lysine deoxycholate (XLD) agar is used for the recovery of which of the following organisms? A. *Staphylococcus spp. B. Yeast C. *Salmonella* & *Shigella* D. *Clostridium difficile*
C. *Salmonella* & *Shigella*
1588
Which nonfermenting GNR is most often associated with cystic fibrosis? A. *Pseudomonas aeruginosa* B. *Morganella morganii* C. *Helicobacter pylori* D. *Yersinia pestis*
A. *Pseudomonas aeruginosa*
1589
Which of the following organisms is both motile and produces urease? A. *Streptococcus* spp. B. *Proteus vulgaris* C. *Serratia marcescens* D. *Francisella*
B. *Proteus vulgaris*
1590
Which of the following *Haemophilus* spp. requires X-factor? A. *Haemophilus parainfluenzae* B. *Haemophilus parahaemolyticus* C. *Haemophilus influenzae* D. All of the above
C. *Haemophilus influenzae*
1591
Which of the following tests is used to differentiate micrococci from staphylococci? A. modified oxidase (microdase) B. catalase C. Voges-Proskauer (VP) D. Gram stain
A. modified oxidase (microdase)
1592
Which antibiotic is used to screen for penicillin susceptibility in *S. pneumoniae*? A. ampicillin B. imipenem C. tetracycline D. oxacillin
D. oxacillin
1593
Which of the following flagellates is sexually transmitted and recovered from the urogenital tract? A. *Chilomastix mesnili* B. *Giardia* C. *Trichomonas vaginalis* D. *Pentatrichomonas hominis*
C. *Trichomonas vaginalis*
1594
KOH is used for the examination of fungal elements from which of the following specimens? A. blood B. skin and nails C. sputum D. bone marrow
B. skin and nails