Respiratory Flashcards

1
Q

Actinomyces israelii

A
  • Pathogen category: G+ filamentous branching rod (fungal appearing), obligate anaerobe, extracellular
  • Source: normal oral flora
  • Virulence factors: depends on the other bacteria to start infection
  • Clinical: dental abscess with draining tracts and sulfur granules (Actinomycosis)
  • Immune response: local inflammatory response
  • Treatment/Prevention: debridement and penicillin for extended period

Actinomyces israelii: a fungal-appearing Gram positive bacterium with branching filaments that lives in anaerobic corners of the mouth. A low level pathogen that typically has co-infecting bacteria (of which there are many in the mouth!).

Actinomyces- normal floral type thing if it is introduced into trauma tissue developing and when getting established developing fibrosis and taking longer to penetrate into the tissues. Breaking of the tooth and jarring them into tissues and may even have a draining of sinuses. Sulfur granules clumps of cell and fungus like bacteria popping out of those sinuses.

Actinomycosis, as seen here, presents as abscesses (discharged purulence with a “sulfur granule” appearance) with draining sinus tracts. Treat with penicillins for several weeks (“looks like a fungus, treat as long as you would a fungus”).

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2
Q

Bordetella pertussis

A
  • Pathogen category: G- rod, aerobic, extracellular
  • Source: human reservoir, spread by respiratory droplets, very contagious
  • Virulence: exotoxins assist with adhesion and adenylyl cyclase toxin that interferes with neutrophil function; pertussis toxin (inhibits G protein to lessen PMN activity), hemagglutinin (adhesion), adenylyl cyclase toxin (triggers neutrophil destruction)
  • Clinical: pertussis (whooping cough)
  • Immune response: antibodies to toxin
  • Treatment/Prevention: DTap (acellular pertussis); azithromycin
  • Diagnosis: swab from posterior nasopharynx for culture

Bordetella pertussis: pertussis or whooping cough, where paroxysmal coughing is followed by a “whoop” of inspired air past the partially closed airway. Gram negative rod, macrolides indicated for treatment.

Bordatella adhere in the larynx and trachea, adherant professional in respiratory pathogen affecting epithelium producing inflammatory response and developing metaplstic changes. Mucus and bronchial obstruction comon in children. Bronchial obstruction- create barotrauma with the cough lethal to children. If adult have chronic cough consider this as the differential.

Pertussis gives off toxins- toxin activity as it is given off inhibiting G protein to lessen neutrophil from coming into the area and killing off bacterial. Pertussis- hung up as lymphocytosis toxin interferes with high endothelial venules (easy egress into the lymphocytes) making them unable to go through and make up with cognate antigen. Adenylyl cyclase- neutrophils not effectively killing off.

Do a acellular pertussis in the TDAP generating immune response to toxin (not as much of the whole dead again and less of a side effect profile)

Early on, the disease appears cold-like (catarrhal stage), but is very infectious. It is not just a pediatric illness, although they are most at risk, hence the effort for widespread vaccination, and with current CDC recommendations for Tdap coverage (tetanus toxoid, diphtheria toxoid, and acellular pertussis) during pregnancy and during adulthood.

Attachment to the airway cells is enhanced by filamentous hemagglutinin and pertussis toxin. The acellular pertussis vaccine is directed against those two agents.

Other toxins help to elevate cAMP and interfere with neutrophil function.

The tight adhesion of the bacterium accounts for the need of a swab from the posterior nasopharynx for culture.

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3
Q

Burkholderia species

A
  • Pathogen category: G- rod, aerobic
  • Source: environmental (soil and water) from SE Asia
  • Virulence: toxin similar to Pseudomonas including pyocyanin
  • Clinical: meliodosis with susceptibility with diabetes, chronic renal failure, ICP; glanders in horses
  • Immune response: cell mediated; can relapse
  • Treatment/Prevention: ceftaidime or carbapenems with shifting to oral sulfadrugs after initial IV meds
  • Only takes a few to infect (bioterrorism)

As the older name of Pseudomonas pseudomallei suggests, Burkholderia is a Gram-negative environmental rod, particularly found in soil and water in Southeast Asia. Inhalation or inoculation can trigger meliodosis, but that can have chronic effects as well. It takes only a few bacteria to infect from an aerosol attack, hence the concern of bioterrorism (and why on the NYS notifiable condition list, as are many of the organisms that we cover; https://www.health.ny.gov/forms/instructions/doh-389_instructions.pdf). Doesn’t take a lot to trigger disease in inhalation, atypical pneumonia widespread infected pattern, abscess. Pneumonia plus and dialing up the ranks with more problems.

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4
Q

Chlamydia (Chlamydophila) pneumoniae

A
  • Pathogen category: poorly G staining since no peptidoglycan, intracellular
  • Source: human reservoirs spread by respiratory droplets
  • Virulence: life cycle with elementary (extracellular that is the infectious phase phagocytosed by the next cell) and reticulate bodies (multiplies in cell’s phagosome)
  • Clinical: atypical PNA or bronchitis; persistent cough; more in elderly
  • Immune response: neutrophils help to clear; strong inflammatory response (like pelvic inflammatory disease with C trachomatis)
  • Treatment/Prevention: tetracyclines or macrolides; immunity is not long lived
  • Diagnosed by serology or nucleic acid probe assays

Features of interest for Chlamydia and the related genus of Chlamydophila (slightly different genome size and ribosomal features compared to Chlamydia; the organisms below have been recently reclassified as Chlamydia):
Elementary bodies spread aorund and spores to infect nearby cells turning into reticulate body generating rabid growth and multiplication before degeneration elementary body again (similar to virus). Have a cell wall lipopolysaccharide. Strong inflammatory response to kill off reticulate bodies and new batch of antibodies going around with many strains and not able to catch up to the strain with different stages immunologic memory wont be able to avoid the next infection. Gets in there and established can get patchy not a lot of cell wall to target doing ribosomal approach (tetracycline, ezithromycin, doxycucline)
small intracellular obligate parasites that are treated with tetracyclines or macrolides for several weeks, as they are slow growing and persistent.
Gram negative-like cell wall—no peptidoglycan but LPS (some)
life cycle of intracellular reticulate body that multiplies in the cell’s phagosome and the extracellular elementary body that is the infectious phase phagocytosed by the next cell
although they generate a strong inflammatory response that is cell-mediated (think of pelvic inflammatory disease scarring with C. trachomatis) with a number of innate responses, immunity to chlamydias is not long-lived, and so runs the risk of additional inflammation from repeated infections (Darville & Hilke, 2010, p. 116).

Chlamydia [Chlamydophila] pneumoniae: a common, but not severe, bronchitis or pneumonia, associated with persistent cough; tends to be more in the elderly compared to Mycoplasma. The organism is diagnosed by serology (problematic, because of the possibility of repeated infections) or nucleic acid probe assays.

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5
Q

Chlamydia (Chlamydophila) psittaci

A
  • Pathogen category: poorly G staining since no peptidoglycans, intracellular
  • Source: bird reservoirs
  • Virulence: life cycle with elementary and reticulate bodies; spread through lymph nodes to generate a systemic response
  • Clinical: atypical PNA, may disseminate into possible lethal infection
  • Immune response: neutrophils help to clear
  • Treatment/Prevention: tetracyclines or macrolides
  • Diagnosed with serology
    Chlamydia [Chlamydophila] psittaci: psittacosis (ornithosis) is an atypical pneumonia from exposure to infected birds or their droppings. The organism can spread through lymph nodes and so generate a systemic response in severe cases. As with C. pneumoniae, diagnosable through serology.
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6
Q

Corynebacterium diphtheria

A
  • Pathogen category: G+ rod (pleomorphic shape- Chinese characters), aerobic, extracellular
  • Source: human reservoir, spread by respiratory droplets
  • Virulence factors: diphtheria toxin, blocks protein synthesis
  • Clinical: diphtheria with oropharyngeal pseudomembrane; cardiac damage
  • Immune response: antibodies to toxin
  • Treatment/Prevention: DTap; antitoxin and penicillin or erythromycin for active infection

Corynebacterium diphtheriae should be rare, given the readily available inactivated toxin vaccine, but with respiratory droplet transmissibility, international travel, and decreased immunization rates, it needs to be recognized if present with its feature of pseudomembrane production. Diphtheriae is always around us and is a human based organism, that is found in breakdwon of ehalth systems.

Features of interest with C. diphtheriae:
Gram positive pleomorphic rod (“Chinese characters”), with antitoxin to decrease the toxin effect and macrolide or penicillin appropriate to decrease the bacterial number (Sanford Guide 2018)

The toxin inhibits cellular protein synthesis (by shutting down ribosomal elongation factor-2), which leads to epithelial cell death. This leads to the formation of a pseudomembrane as result from acute inflammation with fibrin, pus, and mucus. Toxin having a component- activation, b for binding. Shuts down ribosomal activity causing massive deliberate shutdown of humanicidal leading to dead white cells and fiber.

Myocarditis can also occur and be lethal, along with asphyxia from the pseudomembrane. Toxin can circulate into kidney, brain, or accumulate neough in myocarditis. Peniccilin as well as direct anti-toxin as passive immunization, TDAP, wanting them to form active antibodies and prevent ongoig spread and circulation of toxin to the heart.

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7
Q

Fusobacterium necrophorum

A
  • Pathogen Category: G- rod, anaerobic, extracellular
  • Source: normal flora of oropharynx
  • Virulence factors: LSP and other G- features
  • Clinical: pharyngitis, Lemierre syndrome
  • Immune response: neutrophils
  • Treatment/Prevention: for Lemierre syndrome- piperacillin + taxobactam; carbapenem; metronidazole + ceftriaxone; clindamycin (if PNC allergy)
  • Lemierre syndrome- can generate infection extending to the posterior, lateral pharynx that can trigger internal vein thrombosis

While a normal flora component of the mouth, Fusobacterium necrophorum with a bacterial pharyngitis, often similar in presentation to strep throat. Where F. necrophorum is of concern is its association with Lemierre syndrome that can generate an infection extending to the posterior, lateral pharynx can trigger internal jugular vein thrombosis.

Causes bacterial meningitis- localized sepsis, enhancing thrombosis and if it isnt recognized can loalize thrombosis on cellultis pattern closer to IJV. Pennicillins even specizlied unable to interact and have to use cephalosporins.

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8
Q

Haemophilus influenza

A
  • Pathogen category: G- rod, aerobic, extracellular
  • Source: human reservoir with many strains as normal flora, spread by respiratory droplets
  • Virulence factors: capsule, IgA protease, beta lactamase
  • Clinical factors: meningitis, epiglottitis, OM (usually without capsid)
  • Immune response: Igs to capsule, complement
  • Treatment/Prevention: Hib vaccine; ceftriaxone
  • Epiglottitis- medical emergency; risk of respiratory arrest; present with sore throat, drooling and difficulty swallowing and breathing

Other bacterial head and neck infections
Haemophilus influenzae: encapsulated strains are responsible for otitis media, sinusitis, epiglottitis, and meningitis, fortunately now rarer with the Hib vaccine.

Features of interest with H. flu:
Gram negative rod with capsule (b serotype most common and the one vaccinated against), so late-generation cephalosporin an appropriate antibiotic choice
IgA protease is another anti-immune strategy along with the capsule

Epiglottitis, mostly from H. influenzae, is a medical emergency, with risk of respiratory arrest. It should be rare in children vaccinated with the Hib vaccine, but unvaccinated individuals, e.g., adults, can still present with a sore throat, drooling, and difficulty in swallowing and breathing (“dysphagia, drooling, distress”). Can develop a nasty acellultiis, if the body cant catch up can become meningitis. More typically see in otitis media, the flu or other kind of compromise of respiratory epithelium and establishing downstream (cephalosporins). Tripoding respiratory distress and drooling are common.
* Otitis media- often types not targeted by the Hib vaccine; penicillin; Augmentin against beta-lactamase if no progress

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9
Q

Klebsiella pneumoniae

A
  • Pathogen category: G- rod, aerobic, extracellular
  • Source: part of colonic flora (opportunistic), nosocomial
  • Virulence: capsule, beta lactamase
  • Clinical: PNA with red currant jelly sputum (exotoxin and proteases account for tissue damage) and abscesses; nosocomial UTIs
  • Immune response: Igs to capsule
  • Treatment/Prevention: multiple drug resistances; carbapenems as needed

Klebsiella pneumoniae: an opportunistic infection, e.g., generating a pneumonia with abscesses (currant-jelly sputum). Features of interest for Klebsiella pneumoniae. Klebseilla abscess- hospital based or tough living (capsule) red currant ejlly. Harder to kill with beta lactamase with higher level later generation cephalosporin
Gram negative rod with capsule
Environmental, opportunistic organism—may colonize the oropharynx of weakened individuals
multiple drug resistances, so that it will need coverage from agents such as carbapenems, although the reports of carbapenem-resistant Enterobacteriaceae such as Klebsiella continue to increase
endotoxin and proteases account for tissue damage

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10
Q

Legionella pneumophila

A
  • Pathogen category: G- rod (poorly staining), aerobic, intracellular
  • Source: contaminated water supplies (no person to person spread; resistant to chlorine)
  • Virulence: prevents fusion of phagosomes and lysosome and so proliferates within alveolar macrophages
  • Clinical: legionnaire disease (PNA, fever, diarrhea)
  • Immune response: cell mediated
  • Treatment/Prevention: azithromycin or respiratory quinolone
  • Diagnosed with antigen assay (urine), fluorescent antibodies, or use of serology
  • Culture n charcoal yeast extract agar
  • CXR will show infiltrative processes

Legionella pneumophila: intracellular, Legionnaire’s disease with pneumonia, fever, and sometimes diarrhea, from contaminated air conditioning systems (no person-to-person spread), initially colonizing amebae (i.e., able to survive within phagocytic cells).

Older men dying of pneumonia that wasn’t a stypical pattern, gram negative, special charcoal medium for it to grow. Environemtnally hardy organism living inside organisms like amoebas in water persist inside phagocytic cell. Environment or organism not necessarily killed by chlorination and making biofilm with aerolisnzation from building wide AC building. Bacteria have ability to persist in pons can get aerosinolized and down to macrophages. Older people with lung disease have issues with macrophages not able to kill them because arent activated.

Once inhaled, Legionella will survive intracellularly in the macrophages by inhibiting phagosome/lysosome fusion, and subsequently release as a transmissive form (you can see why I am doing this after the chlamydiae).

This infection can trigger the macrophage to generate an inflammatory response that harms lung tissue.

Features of interest for L. pneumophila:
poorly-staining Gram negative rod, with respiratory fluoroquinolone (macrolide as alternative) recommended (Sanford Guide 2018)
aquatic environmental organism, resistant to chlorine
affects weakened individuals, e.g., elderly, as they mount less of a Th1 response to stimulate macrophages

Identification is done with an antigen assay (particularly done on urine), fluorescent antibodies (less popular), or use of serology, as Gram staining is difficult, as seen in the image.

In addition, in terms of culture, a specialized charcoal yeast extract agar is used, as Legionella is fastidious (difficult to grow out), taking several days.

As with other atypical pneumonias, the CXR of a patient with Legionella will show an infiltrative process.

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11
Q

Moraxella catarrhalis

A
  • Pathogen category: G- diplococcus, aerobic, extracellular
  • Source: human reservoir, upper respiratory tract
  • Virulence: capsule, betalactamase (highest level)
  • Clinical: OM in children, PNA in patients with COPD
  • Immune response: antibodies to capsule
  • Treatment/Prevention: amoxicillin with clavulanic acid
  • Otitis media; penicillin; Augmentin against beta-lactamase if no progress

Moraxella [Branhamella] catarrhalis: is a Gram negative coccobacillus that is not as kidney-bean shaped as Neisseria. M. catarrhalis is a cause of pneumonia, particularly in those with previous lung disorders, as well as sinusitis or otitis media (the third major head and neck organism after pneumococcus and H. influenzae). M. catarrhalis shows high levels of beta lactamase production; can be covered by a variety of agents, e.g., later generation cephalosporin, Augmentin®, sulfa drugs, macrolides (Sanford Guide 2018). Look gonnorhea able to hang out and adhesants, not flushed away, not commonly capsuled. Likes to produce beta lactamases- periplasmic region cranks out self produced items cutting down on ability of cephalosporins to not get out. Start at amoxycillin and then augmentin.

Apircal scarring- hyperpenetration Tb secondary moraxella where tb started

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12
Q

Mycobacterium tuberculosis

A
  • Pathogen category: acid fast bacterium, obligate aerobe, intracellular
  • Source: human reservoirs, spread by respiratory droplet
  • Virulence: lipid-rich cell wall
  • Clinical: tuberculosis
  • Immune response: delayed type hypersensitivity with caseating granuloma formation
  • Treatment/Prevention: multidrug therapy involving isoniazid and others; BCG vaccine
  • Ghon complex- primary infection fibrosis, usually hilar lung nodes
  • PPD- type IV hypersensitivity with activated T cells (Th1)
  • Military TB- secondary spread results from hemotogenous spread of the organism

Tuberculosis should certainly be a consideration for lung infections, particularly for those patients from high prevalence regions. Develops caseating granuloma. Primary foci ghon complex battle got sufficiently fought in the lymph node fibrosiing it. Milliary tb hematenous spread before fight begins. Targetting the fatty acids (mycolic acids) on the tb acid-fast coat.

TB and other mycobacteria are obligate aerobes, so it is not surprising that there is a predilection for the apices of the lungs with their high V/Q ratios.

Primary disease: wall off, fibrosis of Ghon complex of the original lung site and local hilar lung nodes

The PPD (purified protein derivative), as a 0.1 ml localized subcutaneous injection that represents a type IV hypersensitivity with activated T cells if there are Th1 cells that respond to the TB presence.

Secondary spread can occur if there is subsequent immunosuppresion. Miliary TB results from hematogenous spread of the organism.

As briefly suggested under the antimicrobial section earlier, a combination of medications, involving isoniazid and others depending on severity, e.g., rifampin, pyrazinamide, and ethambutol, will be needed for months in order to combat the mycobacterium.

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13
Q

Mycoplasma pneumoniae

A
  • Pathogen category: no cell wall, aerobic, extracellular, slow growing
  • Source: human reservoirs
  • Virulence: adhesions (trigger ciliostasis) to respiratory cilia and no cell walls to target
  • Clinical: atypical PNA (nonproductive cough for a week or more)
  • Immune response: cleared by macrophages in mucosa
  • Treatment/Prevention: macrolides
  • Less alveolar exudate and more interstitial presentation on CXR

In contrast to the pneumococcus, the atypical pneumonias are subacute in onset, with a week or more of symptoms, e.g., nonproductive cough, before a patient will seek treatment. There is less alveolar exudate and a more interstitial presentation on chest film. No cell wall tiny bacteria can get into the lung and give off ciliary stasis to get in down toward respiratory bronchiole and conducting bronchiole and ciliary stasis and mucus movement out (patchy not fully lobar and localized) no cell wall so you canttarget that (doxy-ribosome)

The CXR for the common atypical pneumonia of Mycoplasma pneumoniae is more infiltrative than the lobar picture of pneumococcal pneumonia.

Mycoplasma pneumoniae: mycoplasmas have no cell walls, and so are not seen on Gram stain. With no peptidoglycan, macrolide coverage is useful.

Mycoplasma makes adhesion proteins that triggers ciliostasis, and hence access to the lower portions of the respiratory system.

Very small and slow-growing , so that therefore usually clinical diagnosis, and assays that follow antigens, e.g., cold hemagglutinins (antibodies that cross-react with RBCs) instead of Gram stain or other visualization techniques.

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14
Q

Pseudomonas aeruginosa

A
  • Pathogen category: G- rod, obligate anaerobe, extracellular
  • Source: multiple environmental exposures, nosocomial
  • Virulence: glycocalyx, exotoxin A (diphtheria like), proteolytic enzymes, pyocyanin (blue pigment that damages host cells via reactive oxygen species), betalactamase
  • Clinical: folliculitis, pneumonia, burns, OE
  • Immune response: intact epithelia, functioning Igs, complement, neutrophils
  • Treatment/Prevention: antipseduomal medications (piperacillin-tazobactam and tobramycin)
  • Can be deadly for CF patients; if it causes PNA the proteases can lead to a hemorrhagic picture
  • Otitis externa- typically a fuoroquinolone if moderate to severe

Pseudomonas aeruginosa is a pathogen that will show up in a number of contexts, given its minimal environmental requirements and large set of virulence factors. It can be especially deadly for patients with cystic fibrosis, and if it causes pneumonia, the extensive proteases can lead to a hemorrhagic picture.

Environmentally hardy- doesn’t need a lot of nutrients, otitis externa. Produces many toxins especially those who are immune compromised high in patients with cystic fibrosis and proteases smelling like grape (acetone). Pseudomonas- can become pneumonia RBC destroyed alveoli. Beta lactamases and drug resistance producing special anti-pseudomonal drugs to kill it cephalosporins and higher level penicillins.

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15
Q

Streptococcus mutans (viridans strep)

A
  • Pathogen catergory: G+ coccus, aerobic, extracellular, chains
  • Source: normal flora or oropharynx
  • Virulence factors: glycocalyx; glucans to adhere to enamel; acids as result of sugar fermentation
  • Clinical: caries, endocarditis
  • Immune response: salivary defense proteins (lysosomes mainly, IgA and IgG in saliva)
  • Treatment/Prevention: dental hygiene; dental procedure prophylaxis with amoxicillin
  • Can also result in trismus, inability to open mouth with peritonsillar abscess
  • Ludwig angina- rapid spreading bilateral infection in the submandibular space that imitates with dental abscess

Streptococcus mutans (viridans strep): oral flora; implicated in dental caries. A film (pellicle) derived from salivary proteins allows the initial attachment of these oral streptococci, with other organisms adding on. The acids from bacterial metabolism damages the mineralized enamel. Anaerobic organism have (streptococcus mutans- lesser hemolytic bacteria) biofilms that is placed on enamel with glycosugar and can get actinomyces and fusibacteria and while metabolziing sugar biofilm the bacteria release acid destroying your enamel. With plague, dry sticky adhering biofilm that is cleaned off to prevent more.

A review of head and neck anatomy can help to account for different presentations of infections in the region, e.g., trismus or the inability to open the mouth with a peritonsillar abscess.

Polymicrobial disease can get among fascial plane and cellulitis making it a tight peritonsillar fit developing ludwig angina.

Ludwig angina is a rapidly spreading bilateral infection in the submandibular space that typically initiates with a dental abscess, with a polymicrobial infection of Streptococcus mutans and others.

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16
Q

Streptococcus pneumoniae

A
  • Pathogen category: G+ coccus, aerobic, extracellular, lancet shaped diplococci
  • Source: normal flora of upper respiratory tract
  • Virulence: capsule (prevent PMN binding and phagocytosis), IgA protease (disease stays in anatomical boundaries-lobar), adhesins
  • Clinical: lobar pneumonia (rigor triggered by IL-1; rusty sputum from capillary leakage), meningitis, sinusitis, OM
  • Immune response: Ig formation to capsule, complement, neutrophils
  • Treatment/Prevention: penicillin; sensitive to other respiratory agents depending on local resistance; vaccine targeting capsule antigens
  • Detected by latex agglutination from CSF
  • Otitis meda; penicillin; Augmentin against beta-lactamase if no progress

Pathogenic strains of the pneumococcus have a thick capsule to prevent PMN binding and phagocytosis (although it can still get opsonized, as with the pneumococcal vaccine). S. pneumoniae does not produce a lot of proteases, so that the disease stays within anatomical boundaries (hence the picture of lobar pneumonia on CXR). A single rigor (triggered by cytokines like IL-1) follows an abrupt onset. The rusty sputum results from capillary leakage following the lung invasion (see how many WBCs are in the alveoli). Pleuritic chest pain can follow peripheral lung involvement. Classic pneumar pneumonia, most exist with the capsule doing complement activating and hiding makign it more infections. Chills- reset of thermostat, rust colored sputum from leakage of neutrophils into the alveolar space making it leaky and rust-colored sputum. Penicillin should work with pneumococcal strains higher up the ration of drugs. Pneumococal vaccine so you have the capsule and able to phagocytoze before this point.

Pneumoccocus- alevoli filled with neutrophils generating enough inflammation to get leakage into the alveolus and filling it with neutrophils and consolidation. Macrophages- activated enough by presence of pneumococcus phagocytossize the aftermath to fairly normal anatomy.

Additional features of interest for S. pneumoniae:
Gram positive lancet-shaped diplococcus, alpha hemolytic
may be part of normal flora, spread by respiratory droplets
may be detected by latex agglutination test in CSF, as it is a common agent for meningitis
treatment for pneumococcal pneumonia focuses on penicillin or respiratory quinolones, although macrolides or doxycycline may also cover strains.

The pneumococcus can be normal oropharyngeal flora in much of the population, so be sure that the sputum sample is of good quality to characterize it as the presumptive agent for a patient’s pneumonia, looking for the lancet-shaped diplococcus following Gram stain.

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17
Q

Streptococcus pyogenes (group A strep)

A
  • Pathogen category: G+ coccus, aerobic, extracellular
  • Source: normal flora of oropharynx and skin, disease with penetration
  • Virulence factors: streptolysin O (beta hemolysis), erythrogenic toxin, M protein blocks complement, capsule, hyaluronidase, streptokinase, peptidase (destroy C5a)
  • Clinical: impetigo, cellulitis, necrotizing fasciitis, pharyngitis, scarlet fever
  • Immune response: Ig formation to M protein neutrophils, cross-reactive antibodies can generate rheumatic fever
  • Treatment/prevention: penicillin
  • Adhesins- lipoteichoic acid and protein F
  • M protein- complement opsonization, anticomplement like human cells, can lead to autoimmunity, used to evade immune system
  • Erythrogenic exotoxin (superantigen) accounts for scarlet fever; multiple papules creating sandpaper textured skin

Group A streptococci can cause a number of illnesses, thanks to adhesins usch as lipoteichoic acid and protein F that bind to fibronectin, and a variety of other virulence factors that include proteases, DNases, streptokinase, streptolysins, and an antiphagocytic capsule. M protein is a streptococcal feature that interferes with complement opsonization (binds fibrinogen and complement protection proteins) that is highly variable among strains at the A region; cross-reactive antibodies to certain pharyngeal strains may contribute to rheumatic fever. Antibodies against it might cross-react with normal tissue leading to rheumatic fever.
Adhesive pili- sticks to cells. Techoic acids stabilize things along the way.
F protein- fibronectin common component of the extracellular matrix and mimic normal features to successfully adhere to the surface of the celll. Techoic acids- hold onto and stabilize wall, have other carbs and also anchro the cell wall and membrane. Pennicilin and beta lactam may not work because of resistance but is the first line and thing you try.
Streptococcus is a Gram-positive coccus that grows in chains, and is beta-hemolytic (hemolysin and breaking open red cells and then eating hemoglobin), as shown by the hemolysis on a blood agar plate.
Trigger toxins and destroy RBCs
Streptococcus pyogenes (Group A strep)
Pathogen category: G+ coccus, aerobic, extracellular, in chains
Source: normal flora of oropharynx and skin, disease with penetration
Virulence factors: streptolysin O (beta hemolysis), erythrogenic toxin, M protein blocks complement, capsule, hyaluronidase, streptokinase, peptidase (to destroy C5a)
Clinical: impetigo, cellulitis, necrotizing fasciitis, pharyngitis, scarlet fever
Immune response: Ig formation to M protein, neutrophils. Cross-reactive antibodies can generate rheumatic fever.
Treatment and/or prevention: penicillin

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18
Q

Adenovirus

A
  • Pathogen category: ds DNA unenveloped
  • Source: human reservoir
  • Virulence: multiple serotypes; inhibition of MHC I expression and cell apoptosis pathways
  • Clinical: respiratory, GI, or ophthalmic disease depending on serotype
  • Immune response: cell-mediated immunity
  • Treatment/prevention: cidofovir in immunocompromised (bone marrow transplant); live oral vaccine for military personnel
  • ARD- particularly in military recruit populations
  • Proteins to inhibit apoptosis and interferes with NK cells

ADENOVIRUS
Unenveloped dna virus- pink eye from the pool, cold. DNA virus more genome information than an RNA virus. Can shut down MHC1, interferon production, percolating and build up a high dose of virion in cell before spreading adenos when successful can make virions and spread stay around long enough to generate appropriate adaptive system with many strains making it hard to target. Can cause URI espeically among military personnel with an oral vaccine allowing the uptake of a weakened virus and developing immunologic memory.
Adenovirus is a ds DNA nonenveloped virus, where the penton and its base plug into receptors on cells to infect them. The hexons and pentons will express serotype-specific antigens that help to direct the different strains to different targets, and generating a variety of infections (so placing them in the respiratory part of this course was a somewhat arbitrary decision!).

Acute respiratory disease (ARD) has been seen particularly in military recruit populations (strains 4 and 7).

The timing of adenovirus infections is slower than many viruses, with proteins being made to inhibit apoptosis and interferes with NK cells, MHC I, and interferon until release, which is assisted by late lytic proteins which burst open the cell to release the many virions made. This allows for a very high rate of adenovirus production. The delay in virus production means a delay in the onset of symptoms like gastric distress, but it also may allow the adaptive immune system to generate memory to an adenovirus infection, although there are many strains out there.

19
Q

Coronavirus, including emerging ones such as MERS-CoV (Middle East respiratory syndrome coronarvirus)

A
  • Pathogen category: +ssRNA enveloped (spikes on the envelop that determine tropism)
  • Source: mostly human, some animal reservoir
  • Virulence: RNA crossover
  • Clinical: cold, severe PNA (SARS, MERS)
  • Immune response: cell-mediated and humoral response
  • Treatment/Prevention: supportive care, ribavirin and peglyated interferon show increased survival in MERS
  • SARS- break out 2002-2003 suspected animal reservoir of bats
  • MERS- ongoing; targeting of receptors that exist on nonciliated respiratory epithelium; camel reservoir

Nasopharynx and Oropharynx

Envelope- meaning targetted and individualized. Coronavirus- most are cold and up in upper respiratory
Other viruses generate upper respiratory infections, in addition to rhinoviruses. Possibility of animal reservoir populations

Coronaviruses, +ss RNA viruses that are helical and enveloped, are called as such given their spike presentation off of their envelope. These spikes determine the tropism of the virus. There are occasional novel populations of viruses that can be much more impacting than regular cold-type conditions:

Coronavirus- not just a quick hit and burst but a more elaborate illness leading to SARS high levels of morbidity and mortalitiy everyone started wearing face mask.

SARS (severe acute respiratory syndrome) that broke out 2002-2003, with a suspected animal reservoir of bats.

MERS (Middle East respiratory syndrome) that has been ongoing for the past seven years, with targeting of receptors that exist on nonciliated respiratory epithelium and elsewhere (McIntosh, 2018), with an animal reservoir of camels. Causing severe respiratory illness having a decent and easy way of spreading via droplet especially during hajj (several days of incubation)

20
Q

Coxsackievirus A, B

A
  • Pathogen category: unenveloped +ss RNA picornavirus
  • Source: human reservoir
  • Virulence factors: environmental hardiness
  • Clinical conditions: A16and A71 associated with HFMD; B is associated with pericarditis and myocarditis; A1-6 causes Herpangina

o HFMD- multiplies in GALT, generation of macules with vigorous immune response that will turn the macules into vesicles and then ulcers, lesions are usually periorbital, hands and feet

o Herpangina- aseptic meningitis, high fever and sore throat with lesions posterior in the pharynx

Picornovirus- may be able to attach to respiratory epithelium and can use environemntally hardy status to show up elsewhere developing strong immune response and visiculation. Ex. Cocksackie develops herpangina breaking out in vesicles in the back of the throat.

Kid disease- sub clinical exposure innate system caught up and destroyed. Cocksackie- depending upon where it wants to settle ex. Aseptic meningitis, carditis

Hand-foot-and-mouth diease (HFMD): a one-week incubation period of multiplying in the local lymphatic tissue (GALT) precedes the generation of macules that, with a vigorous immune response, become vesicular and then eroded ulcers before healing after several days. The lesions tend to be periorbital and anterior orbital, before an exanthem on the hands and feet (think secondary to the viremia).

Herpangina, also caused by coxsackieviruses, is more associated with higher fever and sore throat, with the lesions tend to be posterior in the pharynx.

21
Q

Epstein-Barr (EBV)

A
  • Pathogen category: enveloped ds DNDA virus, latency and reactivation; mononucleosis
  • Source: human reservoir
  • Virulence: latency; transmission via saliva and organ transplants
  • Clinical: mononucleosis presents with fever, sore throat, anorexia, and lethargy a month after exposure, lymphoid tissue in tonsils are swollen but not the level of exudate seen in strep pharyngitis
  • Immune response: cell mediated and humoral immunity
  • Diagnosis: atypical lymphocytes (CD8+ response); monospot (reaction of infected B cells; checking titers of antibodies to viral capsid antigen (IgM is initial, IGG is secondary infection)
  • Treatment/Prevention: supportive care

Remembering that the herpesviruses are enveloped ds DNA viruses that are noted for their latency and subsequent reactivation… Herpes virus 4 hanging out in lymphoctyte becomig large and reactive hanging out with B cells (makin weird antibodies creating basis for mono spot test. Test for antigen of viral capsids or standard response to viral antigen.

Not as much pus driven or redder as strep. EBV

Mononucleosis presents with fever, sore throat, anorexia, and lethargy about a month after exposure. While the lymphoid tissue in the tonsils are swollen in mononucleosis, there should not be the level of neutrophilic exudate as seen with streptococcal pharyngitis.

One way to diagnosis this is by atypical lymphocytes, the CD8+ lymphocytes responding to the EBV infection. Otherwise, the “Monospot” test is geared to looking for reaction of EBV-infected B cells giving off heterophile antibodies to RBCs of other mammals. In addition, checking titers of antibodies to viral capsid antigen (VCA) can indicate current initial (IgM) or secondary (IgG) infection.

22
Q

Influenza A, B

A
  • Pathogen category: -ss segmental RNA, helical
  • Source: mostly human, some animal reservoir
  • Virulence: antigenic shift (segment nature allows massive rearrangement) and drift (error prone RNA polymerase)
  • Clinical: influenza
  • Immune response: cell mediated and humoral; INF alpha and beta (ds RNA production) accounts for flu symptoms
  • Treatment/Prevention: vaccination; neuraminidase inhibitors
  • Hemagglutinin- attaches to host cell sialic acid receptor (epithelium of upper respiratory)
  • Neuraminidase- allows the removal of sialic receptors so virion won’t be stuck and can be released
  • 1918 pandemic- young and healthy dying because this strain for more activation of T cells than normal (ARDS response) causing necrosis or tissue destruction that allowed for secondary infection (PNA)

In contrast to the paramyxoviruses, influenza is an orthomyxovirus.

Influenza: an enveloped -ss segmented RNA virus with single helical nucleocapsid symmetry, with two surface antigens of particular interest: unlike the paramixos (one strand of RNA) this has segmented RNA meaning mixxing and matching come into play causing more variability of strains. Envelope and proteins stabilize between capsid and envelope around developing glycoprotein on surface.
H: hemagglutinin that attaches to host cell sialic acid receptors, such as those found on the epithelial cells of the upper respiratory system. Hemoglutanin- to stick to surface.
N: neuraminidase: allows the removal of those sialic receptors, so that the virions do not stick and can be released. Budding out into lumen of ECM with neuraminidase dissolving through ECM to get into another cell. Can get cell breakdwon if you bud off enough envelope killing the cell.

Flu has an error-prone RNA polymerase (hence, antigenic drift) associated with each segment. The segmented nature of the genome allows for massive rearrangement or antigenic shift.

There is production of ds RNA in the process of replication, so a lot of interferon alpha and beta and other innate response is generated to account for flu symptoms of myalgia, etc.

Influenza is spread by respiratory droplets to the respiratory epithelium, with 1-2 days of incubation, and several days of subsequent viral shedding. Flu infects throughout the respiratory tract, triggering a significant cough reflex.

The cytolytic death of respiratory epithelial cells makes people prone to secondary infections.

23
Q

Measles

A
  • Pathogen category: enveloped –ss RNA; paramyxovirus * Source: human reservoir
  • Virulence: high level of infectivity via respiratory droplet spread; F protein (trigger adhesion of infected to non-infected cells to form giant cells)
  • Clinical: measles
  • Immune response: cell mediated and humoral immunity (CTC can usually clear)
  • Treatment/Prevention: MMR vaccine (live)
  • Three C’s- cough, coryza (acute rhinitis), and conjunctivitis followed with maculopapular rash
  • Koplick spots (epithelial giant cells with surrounding white infiltrates in submucosal glands) in buccal mucosa are diagnostic
  • Subacute sclerosing panencephalitis (SSPE)- slow ongoing progressive condition as a result of PNA

Given widespread availability of a live vaccine, measles should be rare in the US. Measles can be a devastating systemic illness to the weakened unvaccinated patient, however. The systemic spread of measles is triggered by infecting airway dendritic cells, which then carry the virus to lymph nodes to infect a wide variety of cells.

Not like a coronavirus, not only respiratory. Jump on dendritic cells and can bring it to the lymph node lots of cells to meet up with causing viremia and epithelium shedding like w/ EBV developing respiratory illness. When going to the body systems the adaptive system catches it.

Cough, cariza, and conjunctivits first cardinal signs of measles. Spread respiratorilarlily not a classic respiratory illness leading to budding out and innate system is activated. Koplik’s spots (pathopneumonic for measles and look like whitish granules with the immune system catching up and giant cells and macrophages catch up with infected epithelium. Cytotoxic t cells are able to catch up and form antibodies we start to develop the full body rash with viral point of view spreading to the next person. Can develop encephalitis and pneumonia from measles as well as SSPE.

The “three Cs” of cough, coryza [acute rhinitis] and conjunctivitis, followed by a spreading maculopapular (morbilliform) rash, are very striking for measles.

In addition to the distinctive rash, Koplick spots in the buccal mucosa are diagnostic. These are epithelial giant cells surrounded by white cell infiltrates in submucosal glands that appear up to two days before the rash.

Cytotoxic T cell-driven defenses will typically clear measles. Pneumonia can be fatal, and in a small number of cases, there can be an acute encephalitis, or a slow ongoing progressive condition of subacute sclerosing panencephalitis (SSPE) that is fatal

24
Q

Mumps

A
  • Pathogen category: -ss RNA enveloped virus
  • Source: human reservoir
  • Virulence: viremia and spread to multiple organs (parotid gland, meninges); F protein
  • Clinical: mumps
  • Immune response: cell mediated and humoral immunity
  • Treatment/Prevention: MMR vaccine (live attenuated)
  • Prodromal phase of headache and fever following URI
    In contrast to measles, mumps does not present with a rash.

Measles like strategy but preferential targetting of glands, bumps, parititis,

Mumps should be covered by a live, attenuated virus vaccine along with measles (MMR). A prodromal phase of headache and fever follow URI infection. The swollen parotid glands are a classic feature seen in half of patients. Other organs may be infected with generalized spread, with possible orchitis in adults and rarely, sterility.
* Swollen parotid glands are a classic feature; possible orchitis in adults

25
Q

Parainfluenza

A
  • Pathogen category: -ss RNA enveloped
  • Source: human reservoir
  • Virulence: local replication and triggering of mucosal edema; F protein
  • Clinical: croup (narrowing of airway; no systemic spread; fused giant cells allow the virus to spread cell to cell)
  • Immune response: cell mediated and humoral response
  • Treatment/Prevention: supportive care; steroids if needed, nebulized epi to lessen swelling in severe cases

parainfluenza: croup (laryngotracheitis) in children, with cough and airway narrowing. In contrast to mumps and measles, parainfluenza is a paramyxovirus that does not show systemic spread. Formation of fused giant cells allows the virus to spread from cell to cell locally. Steroids and if needed, nebulized epinephrine will help lessen the swelling of the upper airway in moderate to severe cases (Woods, 2019).

26
Q

Respiratory syncytial virus (RSV)

A
  • Pathogen category: -ss RNA enveloped
  • Source: human reservoir
  • Virulence: local replication and triggering of mucosal edema; form giant cells that cause inflammation that will close off narrow airways
  • Clinical: bronchiolitis; PNA in infants
  • Immune response: cell mediated and humoral
  • Treatment/Prevention: targeted monoclonal antibody prophylaxis (F proteins) for high-risk population
  • Winter breakout

RSV is another giant cell former (i.e., syncytial). The giant cells and the associated inflammation can help to close off narrow airways. Palivimuzab (Synagis®) is a monoclonal antibody directed against the F protein in RSV involved in that cell fusion, and, although very expensive, can be indicated for RSV prophylaxis in selected patients, e.g., premature or with congenital heart disease (Sanford Guide 2018).

27
Q

Blastomyces dermatitidis

A
  • Pathogen category: dimorphic fungus
  • Source: environmental reservoirs (wood, rotting soil)
  • Virulence: cell wall
  • Clinical: blastomycosis
  • Immune response: cell mediated
  • Treatment/Prevention: amphotericin B
  • Filamentous form producing spores
  • Asymptomatic to acute PNA to TB/lung cancer
  • Granulomatous skin lesions (nee cell mediated response

“Dimorphic fungi- molds out in the wilderness breath in the spore off of the mold. Breath in the sport and get yeast (single cell) based infection once it is inside the person with macrophage response.
These major environmental mycotic diseases usually have a geographical component, depending under what conditions the (hyphal) form lives. These dimorphic fungi will then infect in yeast form in the body once the spores have been inhaled. The yeasts can become engulfed in the alveolar macrophages, generating granuloma formation. While many will be asymptomatic, if clinical disease arises, it will be treatable by systematic azoles or if necessary, amphotericin B (in case of severe fungal infection can poke holes in normal cells as well) .
Amphiterisen b targets algosterol in the membrane.
Blastomycosis, from Blastomyces dermatidis, where the soil or rotting wood fungus filamentous form produces spores. It may be asymptomatic, something like an acute pneumonia, or a more chronic illness similar to TB or even lung cancer. The systemic disease of blastomycosis can present as granulomatous skin lesions, emphasizing the need for cell-mediated immunity in order to address the condition.
Pathogen category: dimorphic fungus
Source: environmental reservoirs (wood, rotting soil)
Virulence factors: cell wall
Clinical: blastomycosis
Immune response: cell-mediated immunity
Treatment and/or prevention: amphotericin B

28
Q

Coccidioides immitis

A
  • Pathogen category: dimorphic fungi
  • Source: environmental reservoirs (desert soil)
  • Virulence: cell wall
  • Clinical: coccidiomycosis (Valley Fever)
  • Immune response: cell mediated
  • Treatment/Prevention: itraconazole; amphotericin B if needed
  • Deserts of SW USA
  • Filaments break apart and form arthrospores that spread by air
  • Arthrospores germinate into spherules filled with spores in the lung that then spread and generate more spherules

“Coccidioidomycosis (Valley Fever), from Coccidiodes immitis, presents especially in the desert Southwest USA, as the filaments break apart to form arthrospores that are easily spread by air. Valley fever, huge in Phoenix.
In the lungs, one can get germination of the arthrospores into spherules filled with spores, which can then spread and generate more of the spherules.
Pathogen category: dimorphic fungus
Source: environmental reservoirs (desert soil)
Virulence factors: cell wall
Clinical: coccidiomycosis
Immune response: cell-mediated immunity
Treatment and/or prevention: itraconazole; amphotericin B if needed

29
Q

Histoplasma capsulatum

A
  • Pathogen category: dimorphic fungus
  • Source: environmental reservoirs (guano bat/bird)
  • Virulence: cell wall
  • Clinical: histoplasmosis
  • Immune response: cell mediated
  • Treatment/Prevention: itraconazole; amphotericin B if needed
  • Not capsulated
  • Presents differently if in ICP (diffuse pulmonary infiltrates) or immunocompetent (patchy disease and hilar lymphadenopathy) patients
  • Need to differentiate from sarcoidosis
  • Soil hypae form conidia (spores)
  • Ohio and Mississippi River Valleys associated with bat/bird droppings

“Histoplasmosis, from Histoplasma capsulatum (which, ironically, is not capsulated), may present differently depending on whether it is presenting in an immunocompetent or immunocompromised individual. Geographic spread, bird dropping breathing in the spores, alveolar macrophages and granulomitous pattern dangerous in someone who is immune compormised. Breathing in the spores alveolar macrophages produce if not granulomatous abscess occur.
Immunocompetent: patchy disease and hilar lymphadenopathy vs. immunocompromised with diffuse pulmonary infiltrates. One would want to differentiate it from conditions such as sarcoidosis.
Soil hyphae form conidia (spores). The disease is most common in the Ohio and Mississippi River Valleys, particularly associated with bat or bird droppings. In some ways, Histoplasma can present like TB, even with a pattern of disease reactivation.
Pathogen category: dimorphic fungus
Source: environmental reservoirs (guano)
Virulence factors: cell wall
Clinical: histoplasmosis
Immune response: cell-mediated immunity
Treatment and/or prevention: itraconazole; amphotericin B if needed”

30
Q

Lobar patterns

A

G+ S pneumoniae (rust sputum), G- H influenza (opportunistic)

31
Q

Bronchopneumonia pattern

A
  • G+ S aureus, G- K pneumoniae (current jelly), G- P aeruginosa (CF, opportunistic)Definition
32
Q

Bronchopneumonia (atypical)

A

Mycoplasma pneumoniae (walking pneumonia)

33
Q

Interstitial (atypical) pattern

A

P jiroveci (fungi), influenza virus, CMV

34
Q

Variable (atypical) pattern

A

G- coccoballlius, L pneumophila (contaminated water, legionella), chlymydias

35
Q

Pneumonia Symptoms

A

cough, sputum production, rigors (altered hypothalamic temp setting due to IL-1 response to infection), SOB

36
Q

bactericidal

A

kills bacteria

37
Q

bacteriostatic

A

slows growth of bacteria

38
Q

patterns of antibiotic resistance

A

efflux, decreased uptake, limit barrier permeability, beta-lactamases, aminoglycoside modifiers, and alterations in dihydrofolate reductase, ribosomes, RNA polymerase, PBP, cytoplasmic membrane, cell wall, porins

39
Q

antivirals

A

hard to target because it uses host cell organelles for replication; DNA synthesis can be targeted (protease that breaks up the viral DNA)

40
Q

illness locations

A

location can give insight into the possible pathogens

41
Q

surface or systemic infections

A

some pathogens are restricted to the surface while others can spread throughout the body

42
Q

infection and status of respiratory epithelium/immune system

A

some pathogens can infect if defenses are intact but others are secondary invaders

43
Q

Rhinovirus (picorinavirus)

A
  • Pathogen category: +ss RNA unenveloped virus
  • Source: human
  • Virulence factors: multiple strains (rhinovirus); infect certain tissues (tropism- poliovirus, Coxsackie virus)
  • Clinical: colds, rhinitis
  • Transmission: rhinovirus targets respiratory epithelium
  • Immune response: cell-mediated and humoral immunity
  • Treatment/prevention: supportive care (cold); vaccines (polio)
  • Rhinovirus- innate response is to release histamine which is why there is sneezing rhinitis

While a number of pathogens may be spread from the respiratory (or gastrointestinal) tracts and then spread systemically, rhinoviruses target the respiratory epithelium by intercellular adhesion molecule (ICAM-1) recognition. Rhinovirus prefers cooler temperatures, hence its predilection for the upper airway.
The multiple serotypes of rhinovirus take over the cell rapidly and lyses it to release many new virions. The innate system can “shut down” a rhinovirus quickly before the adaptive system is called to respond, so that immunological memory is not always established. This innate response includes histamine release for the rhinitis that leads to sneezing and hence, viral spread, and IL-1 release for a fever.
Clear up for a week- not sitting around till the adaptive system finds it. Then releases to go to a new host unenveloped making it more lytic. Stuffy nose have histamine (cold virus is trying to generate strong innate response with stuffines that you then sneeze it out. While antibodies are being made there are hundreds of strains making it difficult to destroy.
Lytic damage- overgrowth of bacteria damaging eustachian tube cells and then new bacteria comes around. While a number of pathogens may be spread from the respiratory (or gastrointestinal) tracts and then spread systemically, rhinoviruses target the respiratory epithelium by intercellular adhesion molecule (ICAM-1) recognition. Rhinovirus prefers cooler temperatures, hence its predilection for the upper airway.
The multiple serotypes of rhinovirus take over the cell rapidly and lyses it to release many new virions. The innate system can “shut down” a rhinovirus quickly before the adaptive system is called to respond, so that immunological memory is not always established. This innate response includes histamine release for the rhinitis that leads to sneezing and hence, viral spread, and IL-1 release for a fever.
Clear up for a week- not sitting around till the adaptive system finds it. Then releases to go to a new host unenveloped making it more lytic. Stuffy nose have histamine (cold virus is trying to generate strong innate response with stuffines that you then sneeze it out. While antibodies are being made there are hundreds of strains making it difficult to destroy.
Lytic damage- overgrowth of bacteria damaging eustachian tube cells and then new bacteria comes around.