Polypeptides (proteins) Flashcards

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1
Q

what is a polypeptide

A

a chain of amino acids

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2
Q

what two functional groups do amino acid monomers contain

A

amino and carboxyl group

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3
Q

How many different R groups are there

A

20

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4
Q

what is a dipeptide

A

2 amino acids

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5
Q

how is a dipeptide formed

A

a condensation reaction forms a peptide bond between the carboxyl group of one amino acid and the amine group of another. A water molecule is released in this reaction.

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6
Q

what reagent tests for protein

A

Biuret

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7
Q

what is biuret reagent

A

a solution of dilute sodium hydroxide and copper sulfate

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8
Q

what is the primary structure

A

the order/structure of amino acids (R-groups) in a polypeptide chain

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9
Q

what determines the primary structure

A

the order of nucleotides in a gene

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10
Q

what is the secondary structure

A

when hydrogen bonding between peptide bonds creates localised folding

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11
Q

what two structures can protein chains fold to

A

alpha helix, beta-plated sheet

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12
Q

where can the hydrogen bonds be found in protein folding

A

between the C=O and the H-N

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13
Q

name four types of amino R groups

A

-Ionic
-Cysteine (S)
-Hydrogen bonding (OH)
-Hydrophobic interactions (CH3)

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14
Q

what bonds do Cysteine R groups form and whats its name

A

Strong covalent bonds, called a disulphide bridge

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15
Q

what is tertiary structure

A

the precise 3D shape of a single polypeptide, stabilised by R-group interactions

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16
Q

name four examples of R-group interactions

A

hydrogen bonding, disulphide links, ionic interactions, hydrophobic interactions

17
Q

whats another name for 3D shape

A

tertiary

18
Q

define the quaternary structure

A

more than one polypeptide chain associating to form the final protein structure

19
Q

how to test for proteins

A

add biuret reagent I (dilute copper sulfate solution) and biuret reagent II (dilute sodium hydroxide solution) to the sample. positive result will go from light blue-purple

20
Q

describe a disulphide bond

A

strong covalent bonds between the r group of 2 cysteine amino acids