Nitrogen Metabolism Part 1 Flashcards

1
Q

What is the first step in the Catabolism of amino acids?

A

Separation of the amino group from the carbon skeleton.

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2
Q

Transamination reaction (removing amino group from carbon skeleton) requires what coenzyme?

A

Pyridoxal Phosphate

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3
Q

Acquired hyperammonemia

A

Hepatitis, liver ischemia, hepatotoxins, and cirrhosis.

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4
Q

Hereditary hyperammonemia

A

Genetic deficiencies of any of the five enzymes of the urea cycle.

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5
Q

Role of Alanine aminotransferase?

A

Enzyme that transfers amino group from Alanine to a-ketoglutarate, resulting in pyruvate and Glutamate.

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6
Q

Role of Aspartate aminotransferase?

A

Enzyme that transfers amino group from Aspartate to a-ketoglutarate, resulting in Oxaloacetate and Glutamate.

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7
Q

Role of Pyridoxal phosphate (PLP)

A

Coenzyme of aminotransferases.

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8
Q

Role of Glutamate dehydrogenase?

A

Enzyme that drives Oxidative Deamination

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9
Q

What electron acceptors are used for Oxidative deamination?

A

NAD+ or NADP+

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10
Q

Explain the regulation of Glutamate dehydrogenase activity?

A
  • Allosterically regulated:
    • ADP and GDP increase activity
    • ATP and GTP decrease activity.
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11
Q

Ketogenic Amino Acids (7)

A
  • Form Acetyl-CoA:
    • Leu, Ile, Thr, Lys, Phe, Tyr, Trp
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12
Q

Amino acids that can form either Ketogenic or Glucogenic Amino Acids?

A

Ile, Thr, Phe, Tyr, Trp

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13
Q

Glucogenic Amino Acids:

Which AA make pyruvate?

A

Ala, Cys, Gly, Ser, Thr, Trp

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14
Q

Glucogenic Amino Acids:

Which AA make a-ketoglutarate

A

Arg, Glu, Gln, His, Pro

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15
Q

Glucogenic Amino Acids:

Which AA make succinyl-CoA

A

Ile, Met, Thr, Val

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16
Q

Glucogenic Amino Acids:

Which AA make Fumarate?

A

Phe, Tyr

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17
Q

Glucogenic Amino Acids:

Which AA make Oxaloacetate

A

Asp, Asn

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18
Q

Where are branched amino acids metabolized?

A

Peripheral tissues (particularly muscle).

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19
Q

Describe the glutamate pathway?

A
  • ATP and ammonia combine with glutamate to make glutamine.
    • Uses Glutamine synthetase
  • Travel to liver, and the process is reveresed.
20
Q

Describe the glucose-alanine cycle?

A
  • Glutamate is made by transamination, by transfering amino group to pyruvate.
    • Done by alanine aminotransferase.
  • Pyruvate is changed to alanine and sent to ther liver.
  • Alanine then undergoes transamination and becomes pyruvate which is turned to glucose and shipped back to muscle.
21
Q

What is the first nitrogen-acquiring reaction of the Urea cycle and what is the enzyme used?

A
  1. ATP + Bicarbonate —> Carbamoyl Phosphatase
    1. Carbamoyl phosphate synthetase 1
22
Q

Regulation of CPS1

A
  • Requires allosteric activation by N-acetylglutamate.
    • The activator is synthed from Acetyl CoA and Glutamate, both increase after protein rich meal.
23
Q

What role does Ornithine transcarbamoylase have in the urea cycle?

A
  • Combines Ornithine and Carbamoyl phosphate into Citrulline.
24
Q

What is the second nitrogen-acquireing reaction of the Urea Cycle?

A
  • In Cytosol: Citrulline + ATP —> Argininosuccinate
    • Argininosuccinate synthetase.
25
What is the fourth step of the Urea cycle?
* Argininosuccinate ----\> Arginine + Fumarate * Argininosuccinate Lyase: Cleaves a fumarate group off.
26
What is the final step in the Urea Cycle?
* Arginine + H2O ----\> Ornithine + Urea * Arginase
27
What are the net effects of the urea cycle?
* Eliminated nitrogen from ammonia and aspartate, as well as part of a CO2. * Cycle regenerates Ornithine to use again.
28
How many high energy phosphate bonds are used per molecule of urea?
4
29
What two molecules link the Urea Cycle to the TCA cycle? and how?
* **Aspartate** and **Fumarate.** * **Aspartate** (TCA) combines with Citrulline (Urea) to make Argininosuccinate. * Argininosuccinate is then split into Arginine (Urea) and Fumarate (TCA)
30
What is Tertrahydrobiopterin
The oxidation of Phe by phenylalanine hydroxylase.
31
What does N5-methyl THF do and why is it notable?
It regenerates S-adenosylmethionine (adoMet). This is its only known use in mammals
32
How is adoMet synthesized?
ATP and Methionine
33
How is Tetrahydrofolate formed?
From Folate
34
What is special about THF (Tetrahydrofolate)
* Can transfer 1-carbon in different oxidative states * Example: CH3, CH2OH, and CHO
35
Catabolic pathway for Asparagine \> Aspartate \> Oxaloacetate
1. Asparagine 1. Asparaginase 2. Aspartate 1. Aspartate aminotransferase 3. Oxaloacetate
36
Disorder involving Degradation of branched chain amino acids
Maple Syrup Urine
37
What causes metabolic defects in amino acid metabolism?
* Enzyme deficiencies * Build up of products and result in severe health effects. * Managed by restricting intake.
38
What disorder is caused by an issue in Phe degradation to Tyr?
Phenylketonuria
39
What are the symptoms of PKU (Phenylketouria) and what causes it.
1. Issue in first step of Phe dehydrogenation to Tyr 2. Elevated phenylalanine 1. CNS symptoms 2. Hypopigmentation
40
What disorder is caused by an issue in oxidase that breaks open Homogentisate (during catabolism of Tyr). Symptoms?
Alkaptonura Benignl; urine contains elevated levels of homogentisic acid, making it black.
41
What causes Albinism?
Defective Melanin synthesis from tyrosine. Enzyme responsible: Tyrosine 3-monooxygenase (Tyrosinase)
42
What enzyme fails for Homocystinuria?
Cystathionine synthase
43
Symptoms of Homocystinuria?
High plasma and urinary levels of Homocysteine and methionine. Eye, skeletal, and arterial abnormalities, retardation.
44
Degradation and Resynthesis of methionine.
Can go two paths once it is at L-Homocysteine. * If B6 is present L-Cysteine will ultimately be formed * If N5-Methyltetrahydrofolate and B12 are present L-Methionine and Tetrahydrofolate will form
45