Mutations Flashcards

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1
Q

What is a germinal mutation?

A

Inheritance of a mutation in a germ cell. This is when an egg or sperm carries the mutation, the embryo will have all cells carrying mutation as one of the copies is mutated.

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2
Q

What is a somatic mutation?

A

At any possible times of the life of an organism, one somatic cell undergoes mutation. The daughter cells of this specific cell will go on to be mutated as well.

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3
Q

What is a point mutation?

A

A mutation that only affects a single nucleotide.

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4
Q

What are the 2 types of substitution mutations?

A

Transition changes a purine for another, or pyrimidine for another.

Transversion changes a purine for a pyrimidine or vice versa.

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5
Q

Describe the functional classes of point mutations.

A
  • No mutation
  • Silent - where 1 nucleotide is substituted but makes no final change in amino acid as the genetic code is redundant.
  • Nonsense - severe as a stop codon is placed instead of one coding for amino acid, thus an incomplete protein is formed that is useless.
  • Missense - different amino acid coded, can be either acidic or basic and depending on the original sequence of amino acids, this can have a large or smaller effect.
  • Frameshift - loss or insertion of a DNA sequence that shifts the way the sequence is read.
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6
Q

Desribe how sicke cell anemia results from a point mutation.

A

Cuased by a mutation in a single nucleotide in the gene coding for globin, leading to the malformation of hemoglobin molecules.

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7
Q

Are mutations generally spontaneous or induced?

A

Mutations are generally ssoontaneous.

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8
Q

Describe the background of the experiment to show whether mutations are spontaneous or induced.

A

Performed by Luria and Delbruck.

A culture of bacteria cells exposed to bacteriophage eventually becomes clear, as if all the bacteria in the culture were killed. However eventually the culture would grow cloudy again.

It was surmised that the bacteria acquired resistance to the phage and were able to repopulate the culture. Therefore did a spntaneous mutation occur or dd the viral infection change the DNA of the bacteria?

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9
Q

Describe the experiment to show whether mutations are spontaneous or induced.

A

Luria set up a large numbers of bacterial cultures containing a small number of bacteria in each, to which bacteriophage was added.

2 hypothesised situations:

  1. Spontaneous mutations - the number of surviving bacteria would be small in most cultures, but large in a handful.
  2. Directed mutation - number of surviving bacteria would be evenely distributed.

It was found that the spontaneous mutation model proved true.

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10
Q

Why are rare base forms common base forms?

A

Sometimes base forms can be present in their rare base formes, i.e. The common form for thymine is its keto form, while the rare form is its enol form.

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11
Q

Why can rare base forms be mutations?

A

Instead of producing normal base pairs, they can produce different pairs.

Cytosine in its rare form can pair with common form adenine. While guanine in its rare form can pair with thymine.

These base pairings can be transform into a stable mutation via replication. This is because replication maintains mutations in genomes during replication cycles.

Consequently spontaneously mutated DNA can be converted into a permanently mutant copy which is stable after a few rounds of replication.

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12
Q

How do base analogs act as chemical mutagen to DNA?

A

Base analogs that resembles DNA so are erroneously cooperated. E.g. 5-Bromouracil and 2-Aminopurine.

5-Bromouracil can bond with both adenine and guanine.

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13
Q

How do some molecules induce a mutation chemically when interacting with DNA?

A

Molecules directly interacting with DNA to induce structural changes.

HNO2 - nitrous acid - a deaminating agent that deaminates aminic group of adenine and cytosine in some cases, changing it into an ether group.

It can transform A into hypoxanthine that base pairs with C. G changed to xanthine, which still base pairs with C. And C to U, which base pairs with A.

NH2OH - hydroxylamine - a hydroxylating agent

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14
Q

How do some molecules indirectly chemically mutate DNA?

A

Molecules indirectly affect with DNA via induction of mutagenic substances.

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15
Q

Describe the properties of alkalyation agents when interacting with DNA.

A

Depending on dosage, alkylation agents can have different effects - cytotoxic, carcinogenic or mutagenic effects.

Can work in all cells, but works particularly in cells that divide rapidly.

Can be used as antineoplastic or anticancer drugs. These mutagens can be used to target rapidly dividing cells. Although this means that they do not only target cancer cells, but all other rapidly dividing cells.

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16
Q

Give an example of an alkylation agent that is used in therapeutic transtments.

A

Cyclophosphamide is used in immunosupressive treatment of autoimmune diseases and tumours.

17
Q

How does alkylation agents act as mutagens when interacting with DNA?

A

They can add alkyl groups to the bases as well as the phosphate in DNA.

18
Q

How does intercalating agents act as mutagens when interacting with DNA?

A

A bacteriostatic disinfectant against many gram positive bacteria.

Has been used in the form of dihydrochloride and hemisulfate salts as a topical septic, formerly used as an urinary antiseptic.

The intercalating agent proclavin is known to have a mutagenic effect by intercalating between nucleic acid base pairs.

19
Q

Out of the physic waves, which are mostly responsible for inducing mutations?

A

UV-light and X-rays.

20
Q

What is UV-A radiation?

A

This is the great majority of UV light that reaches us (95%). They are mutagens and carcinogens and are involved in photoaging.

UV-A is weakly absorbed by DNA and proteins, instead their action is mediated by proteins called chromophores. Consequently they do secondary damage to DNA.

21
Q

What is UV-B radiation?

A

Only 5% reaches us. They do direct DNA damage and is effeciiently absorbed by DNA and proteins to change their structure.

They are used to sterilise chemical and surgical tools.

They also induce the formation of pyrimidine dimers.

22
Q

What are pyrimidine dimers?

A

Pyrimidine dimers are formed when UV-B induces pyrimidine bases to form strong covalent bonds with each other.

Consequently, if this is not repaired, replicatino would be interrupted. This results in damage to the DNA.

Thymine in particular, forms dimers.

23
Q

What is the purpose of Ame’s test?

A

To verify potentially mutagenic substances.

24
Q

Describe the process of the Ame’s test.

A

Enzymes isolated from rat liver are mixed with salmonella his- auxotrophs and spread on a control plate.

In a different condition (experimental), the bacteria is spread on a medium. Then the enzyme is mixed with a solution of potential mutagen, and put on a filter paper disc. This disc is placed onto the bacterial medium.

Th plates are left to incubate.

25
Q

How does potential results of the Ame’s test prove whether a substance is mutagenic?

A

In the control plate, there will be spontaneous his+ revertants resulting in survival of a few bacteria.

While in the experimental plate, if the substance is mutagenic, the bacteria colonies would be seen growing around the filter paper disc.

This is because his+ revertants would be induced by the mutagen, leading to the survival of colonies.

26
Q

Why are enzymes obtained from rat liver used in the Ame’s test?

A

Because most molecules that enter the body passes through the liver, where enzymes there will apply certain modifications to it. Therefore this effect is reproduced.

27
Q

What is photoreactivation?

A

A process that is mainly used in prokaryotes, but also in some eukaryotic cells. Though not used in humans.

Repairs thymine dimers.

28
Q

How does photoreactivation work?

A

The enzyme prolyase recognises the thymine dimer and cleaves the cross-links between them using energy from visible light.

After this its released as DNA is repaired.

29
Q

What is the only way a human cell can repair thymine dimers?

A

Nucleotide Excision Repair (NER) - prokaryotes also have this system.

30
Q

How does NER work?

A

A polypeptide trimer containing 2 copies of UvrA protein and a copy of UvrB protein recognizes and binds to damaged DNA.

ATP used to bend DNA and change conformation of UvrB protein, UvrA released.

UvrC binds to UvrB & DNA, UvrB makes 5’ incision and C makes 3’ incision.

UvrD releases excised oligomer.

DNA polymerase I

31
Q

How does NER work?

A

A polypeptide trimer containing 2 copies of UvrA protein and a copy of UvrB protein recognizes and binds to damaged DNA.

ATP used to bend DNA and change conformation of UvrB protein, UvrA released.

UvrC binds to UvrB & DNA, UvrB makes 5’ incision and C makes 3’ incision.

UvrD releases excised oligomer.

DNA polymerase I replaces UvrB and fills gap using complementary strand as template.

DNA ligase seals nick left by polymerase.

32
Q

Why is transcription-coupled pathway repaired so fast?

A

If a gene is transcribed in that moment, then it’s needed by the cell and thus any thymine dimers are repaired quickly.

33
Q

How does Base excision repair (BER) work?

A

BER replaces a single mutated base.

Example: deamination of C into U.

A specific protein binds for each specific mutation, in this case DNA glycosylase binds to the base, recognizing and excising it.

Then AP nuclease and phosphodiesterase breaks the single strand of DNA where the nucleotide was missinf.

DNA polymerase repairs the DNA, then everything is joined by DNA ligase.

34
Q

How does the mismatch repair system recognise which strand to repair in prokaryotic cells?

A

This recognition is based on the recognition of the newly synthesised strands.

In bacterial cells, this distinction is made by recognising the strand that is unmethylation.

Bacterial DNA undergo methylation after replication, therefore there is a lag in time where the new strand is not yet methylated.

35
Q

How does the mismatch repair system work? (More detail)

A

MutS recognises the mismatch. MutL and MutH are then recruited.

This complex produces a gap via helicase and exonucleases, this is then resynthesized by polymerase III and ligase.

36
Q

How does the mismatch repair system recognise which strand to repair in eukaryotic cells?

A

Newly synthesized strands contain nicks.

37
Q

What is gene conversion?

A

A specific type of homologous recombination that involves the unidirectional transfer of genetic material from a ‘donor’ sequence to a highly homologous ‘acceptor’.

38
Q

What are pseudogenes?

A

Segments of DNA present in our genome that is not expressed as they contain mutations.

39
Q

How can pseudogenes and gene conversion cause genetic diseases?

A

If a section of gene undergoes gene conversion but the gene is repaired using a homologous gene that is a pseudogene, this protein would not be expressed.

An example is 21-hydroxylase deficiency.