Genetics (Biology) Flashcards

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1
Q

Describe the chromosomal arms and regions.

A

There is a long arm and short arm, a centromere in the length of the chromosome and telomeres at the tips.

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2
Q

Define the karyotype.

A

The complete set of metaphasic chromosomes in a cell of a species.

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3
Q

Define the karyotype.

A

The complete set of metaphase chromosomes in a cell of a species.

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4
Q

How is a karyotype prepared in order to study it?

A

Mitosis needs to be induced in those cells. After collecting the cells, they are put in vitro in culture. Once some time has passed, this process is stopped with another type of molecule called the mitotic blocker. Consequently there are now many cells which have entered mitosis.

Then they undergo many processes and different rounds of centrifuge, before being stained to be studied under a microscope.

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5
Q

Describe a technique for banding a metaphase chromosome.

A

G banding using Giemsa dye, the number of bands are different in metaphase vs prophase, as well as specific for the species.

Although the chromosomal number is not enough as there are several different species that share the same number of chromosomes.

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6
Q

What is heteromorphism?

A

Sex chromosomes are different, they have different shapes and also contains sets of genes which are almost completely different.

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7
Q

What are PARs regions?

A

X and Y chromosomes have some regions called PARs which contain the same sets of genes.

These regions, being homologous, behave as autosomal chromosomes. For instance they can cross over during meiosis.

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8
Q

Describe genetic mosaicism.

A

If a mutation occurs after fertilisation during embryonic development, this is a postzygotic mutation. In this case

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9
Q

Describe genetic mosaicism.

A

If a mutation occurs after fertilisation during embryonic development, this is a postzygotic mutation. In this case only the cells derived from the mutated cells will have this mutation.

As a result the organism affected by this will have some parts of the body affected and others not.

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10
Q

What is a genotype?

A

A mixture of factors, a function of genes and their product and environmental influences.

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11
Q

What is a phenotype?

A

The appearance of a physical characteristic. This is not something that can necessarily be seen, but something that can be measured.

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12
Q

What is a character?

A

A characteristic that can be measured or seen which is inherited

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13
Q

What is a trait?

A

One of the variant forms of a character, e.g. while or purple flower.

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14
Q

What is an allele?

A

The genotype counterparts of a trait.

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15
Q

Describe the method of Mendel’s initial experiment.

A

He crossed the parental pea generation by removing the stamen from purple flowers and transferring sperm bearing pollen from the stamens of white flowers to the carpel of purple flowers.

After their seeds were plantes, this produced the hybrid F1 generation, which were all purple flowers.

He then crossed the F1 generation using the same method to produce the F2 generation, this results in a mix of purple and white flowers in a 3:1 ratio.

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16
Q

What is Mendel’s law of segregation?

A

The 2 members of a gene couple (2 alleles) segregate during the formation of gametes.

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17
Q

Describe the test-cross experiment in determining genotype.

A

Cross a dominant phenotype (unknow genotype) PP with a recessive phenotype pp.

If the resulting generation shows all dominant phenotypes, then the unknow genotype was PP.

If the result is half dominant and recessive phenotypes, then the unknow was Pp.

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18
Q

What does X-linked mutations affect?

A

Affects genes located on the x chromosome. The male to male transmission is possible and males are more frequently affected. Thus, males and females have different possibilities of inheriting the mutated gene.

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19
Q

What is autosomal dominant?

A

For the allele to be expressed, only one copy of the relative gene is present.

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20
Q

What is autosomal recessive?

A

Where 2 copies of the allele is needed to be affected.

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21
Q

Where is the SRY gene? What does it do?

A

The SRY gene on the Y chromosome codes for the development of testes.

The SRY gene is present on the short arm of the Y chromosome.

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22
Q

How does the SRY gene carry out its function?

A

The SRY gene encodes for protein TDF, a soluble factor which induces the formation of the medulla of the embryonic gonads to become the testis.

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23
Q

Describe how sex-linked genes are involved in genetic diseases in humans.

A

The X chromosome usually carries genes for diseases, as its larger.

A male is more likely to be affected by X-linked trait as females carry 2 X chromosomes, therefore the dominant allele is expressed.

While males only have 1 X chromosome, therefore any conditions linked to the X chromosome will be expressed.

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24
Q

Describe the condition hemophilia.

A

Hemophilia is the absence of coagulation factors, it can be either hemophilia A or B. Clotting requires a series of steps, if one is missing, blood cannot clot which is extremely dangerous.

This is an example of a X-linked condition.

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25
Q

Describe the condition X-linked hypophosphatemia (XLH).

A

X-linked dominant.

X-linked hypophosphatemia (XLH) is due to the mutation of the PHEX gene. This encodes Phosphate-regulating neutral Endopeptidase.

This mutation causes abnormalities in the joints, bones and teeth.

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26
Q

What happens if the X-linked allele is dominant?

A

A father with this condition can never transmit to a son, but can always transmit to a daughter.

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27
Q

What is incomplete dominance?

A

The phenotype of the F1 generation is between the phenotypes of the parental varieties.

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28
Q

What is complete dominance?

A

Occurs when phenotype of the heterozygote and dominant homozygote are identical.

When one allele is completely dominant over the other,

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29
Q

What is codominance?

A

2 dominant alleles that can affect the phenotype in separate distinguishable ways, they are both expressed.

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30
Q

What is epistasis?

A

One gene interferes with another gene’s expression.

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31
Q

What is pleiotropy?

A

One gene can influence phenotype in several ways.

32
Q

What is epistasis?

A

One gene interferes with another gene’s expression.

A condition where one gene at one locus alters the phenotypic expression of another gene at another locus.

33
Q

What is pleiotropy?

A

One gene can influence phenotype in several ways, where they have multiple phenotypic effects

34
Q

What are lethal alleles?

A

Alleles that cause the death of the organism carrying them.

35
Q

Give an example of recessive lethal.

A

The mutated gene, when present in homozygosity, is lethal during early life.

36
Q

Give an example of dominant lethal.

A

Only one allele is needed to result in lethality.

37
Q

What are the 3 alleles of the human blood group?

A

I^A, I^B and i.

38
Q

What enzymes do the alleles of the human blood groups encode for? How does this affect the blood cells?

A

I^A and I^B encodes for enzymes that add carbohydrate groups to red blood cells.

I^A allele encodes an enzyme that adds A carbohydrate group, whch is N-acetyl galactose. Therefore A antigens.

I^B allele encodes an enzyme that adds B carbohydrate group, which is Galactose. Therefore B antigens.

39
Q

Describe the ‘bombay’ condition.

A

The mother whose blood group is A and the suspected father has AB, but the child was group O. This shouldn’t be possible as 2 recessive i alleles are needed, and the father can’t possibly have recessive i if his blood group is AB.

Antigen H is a precursor to antigens in ABO blood groups. Without this, no antigens would be made.

In this case the mother and father were both heterozygous for the recessive h allele. Therefore the child born doesn’t have the enzyme needed for any H antigens.

This caused his blood group to exhibit similar characteristic as the O group.

40
Q

Define penetrance.

A

The percentage of individuals that show a particular phenotype among owning a genotype capable of determining that phenotype.

41
Q

Define expressivity.

A

The degree to which trait expression differs among individuals.

42
Q

Describe how envronmental effects affected the expression of genes in the himalayan rabbit.

A

Himalyan rabbits can show differently coloured furs if grown at different temperatures.

It was demonstrated that the gene encoding for the black pigment in the fur is sensitive to temperature. Where the body is warmer, no pigment is produced. While in cooler areas of the body, black pigment is produced.

If a part of its body is put at temperatures lower than 25o, that part will produce black pigment.

43
Q

What is complete penetrance?

A

Identical genotypes and 100% coincidence with expected phenotype.

44
Q

What is complete penetrance?

A

Identical genotypes and 100% coincidence with expected phenotype.

45
Q

What is incomplete penetrance?

A

Identical genotypes but no 100% coincidence with expected phenotype.

46
Q

What is uniform expressivity?

A

Identical genotypes and 100% coincidence with expected phenotype.

47
Q

What is variable expressivity?

A

Identical genotypes and a whole range og phenotypes.

48
Q

What happens when its incomplete penetrance and variable expressivity?

A

Identical genotypes yield a wide range of phenotypes from 0 to 100 through all possible nuances.

49
Q

Define a population.

A

A localised group of individuals capable of interbreeding and producing fertile offspring.

50
Q

Define a gene pool.

A

Consists of all the alleles for all loci in a population.

51
Q

Define a locus.

A

A specific fixed position on a chromosome where a particular gene or genetic marker is located.

This is fixed if all individuals in a population are homozygous for the same allele.

52
Q

What are the 3 parameters used to study population in evolution?

A

Frequency of alleles - proportion of a specific allele at that given locus.

Frequency of genotypes - proportion of that specific genotype at a given locus.

Frequency of phenotypes - proportion of individuals showing a given phenotype in a population.

53
Q

What is always true for the total number of frequencies in a gene pool?

A

p+q=1

54
Q

What are the 5 conditions of non-evolving population in the Hardy-Weinberg theorem?

A
No mutations
Random mating
No natural selection
Extremely large population size
No gene flow to or from other populations
55
Q

How can the PKU gene perhaps be considered to meet the conditions of the Hardy-Weinberg theorem?

A
  • The gene mutation is low.
  • Mating selection is random with respect to whether an individual is a carrier for this allele.
  • Natural selection can only act on rare homozygous individuals who do not follow dietary restrictions.
  • Large population
  • Migration doesn’t apply as many other human populations have similar allele frequencies.
56
Q

Describe how genetic drift changes human populations.

A

This defines random variations of allelic frequencies in small populations.

The smaller the sample, the greater that chance of deviation from a predicted result.

Genetic drift describes how frequencies fluctuate unexpectedly from one generation to the next.

They tend to reduce genetic variation inside a population through losses of alleles, but at the same time increase genetic variation between populations.

57
Q

Describe how mutation changes human populations.

A

Introduces genetic variability, which is completely unpredictable.

Each locus has a relatively constant mutation rate, but can be very different from one gene to another.

Only mutations occurring in gametes will be transmitted to the offspring.

Mutations do not determine the direction of evolutionary changes, but simply increases genetic variants on which natural selection would work.

58
Q

What is the Bottleneck Effect?

A

This is a sudden reduction in population size usually due to change in the environment. From this, the resulting gene pool may no longer reflect the original population’s gene pool.

This new population is smaller so may undergo genetic drift.

59
Q

What are the key characteristics of genetc drift?

A

Significant in small populations.

Causes allele frequencies to change at random.

Can lead to loss of genetic variation within populations.

Can cause harmful alleles to become fixed.

60
Q

What is the Founder Effect?

A

Occurs when a few individuals become isolated from a larger population. As they are a small group, they do not statistically represent their original population, therefore allele frequencies can be different from the larger parent population.

61
Q

What is natural selection?

A

Natural selection is the driving force of evolution and is the strongest one contributing to variability in nature.

62
Q

What is adaptation?

A

A process through which characters evolve to give rise to organisms suitable for their surrounding environment.

63
Q

What is migration (gene flow) and how does it happen?

A

Gene flow is the movement of alleles among populations.

Alleles move through fertile individuals or gametes.

64
Q

What are they main characteristics of migration?

A

Gene flow tends to reduce differences between populations and increases variability inside a population.

It’s also more likely than mutation to directly alter allele frequencies.

Gene flow can decrease the fitness of a population.

Gene flow can also increase the fitness of a population.

65
Q

Provide an example of migration decreasing the fitness of a population.

A

For example bent grass can tolerate high copper concentration in the soil. This allele can become harmful for populations that do not live near copper mines, and results in the decrease of fitness of these populations.

66
Q

Provide an example of migration increasing the fitness of a population.

A

For example, insecticides have been used to target mosquitos carrying the West Nile virus and malaria. Some populations of mosquitoes have evolved alleles resistant to insecticides. If this allele flows into a new population, it would increase the fitness of that population.

67
Q

What is the finess (W) of a population?

A

This represents the relative reproductive ability of a genotype.

A concept that applies to a genotype in that moment in that population, therefore defined as a relative reproductive ability.

A measure of the subject’s ability to transfer genes to a following generation. It takes into account the genetic survival, fertility, ability to attract a partner, take care of offspring….ect. The offspring must also be able to survive and transfer its genotype onto the next generation.

68
Q

How can fitness be expressed as a selection coefficient (S)?

A

S = 1-W

69
Q

What does the selection coefficient measure?

A

Measures the reduction in fitness for a given genotype with respect to the fittest one.

70
Q

What is heterozygote advantage?

A

This occurs when heterozygotes have a higher fitness than homozygotes (both types).

71
Q

What can result from heterozygote advantage?

A

This results in natural selection maintaining 2 or more alleles at the locus.

72
Q

How is the sickle cell allele an example of heterozygote advantage in some ares of the world?

A

Sickle cell allele are homozygous recessive alleles.

People who are dominant heterozygous are healthy, but infected by malaria. While people affected by sickle-cell alleles are protected from malaria infection, even though they are ill.

Therefore there are still areas in the world where this is still maintained in the population. As long as malaria is present, it will select for people carrying this disease.

73
Q

Describe how non-random mating changes the population.

A

If the probability of mating between similar genotypes is higher than expected, then the frequency of homozygotes will tend to increase. If this probability is lower, then the frequency of homozygotes will decrease.

74
Q

What is non-random mating?

A

Individuals with a given genotype mate with individuals with a different genotype more likely than expected based on their frequencies.

75
Q

What is inbreeding coefficient?

A

Measures the genetic consequences of inbreeding. It represents the probability that an individual receives, at a given locus, 2 alleles that are identical by descent.

76
Q

What is a consequence of inbreeding?

A

This increases the probability of recessive alleles, which can be detrimental for the population in case the recessive alleles are diseases.

77
Q

What are the different ways genetic variability can be altered inside a population?

A

Migration and mutation tend to increase genetic variability.

Genetic drift reduces genetic variability inside small populations.

Inbreeding reduced genetic variability, increasing homozygosity.

Natural selection can both increase and decrease genetic variability.