Mutation Flashcards
CNV
Bir bireyin genomundan bulunan bir genin kopya sayılarında bulunan farklılıklardan oluşan genetik karakter özelliklerini ifade eder
Locus
Segment of DNA
Wild-type:common
Variant/mutant allel
Class of mutation
—chromosome mutation:not structural (number of chromosome change) most frequently seen
Aneuploidy
—regional/subchromosomal mutation:structural
Translocation
Partial
Duplication
Deletion
—gene/DNA mutation:point
Point mutation (base substitution)
Deletion(lose) //ikisinin de büyük küçük diye alt grupları var//
Insertion (addition)
Dynamic mutation(expand of repeated side)gametogenesis esnasında genişleyebilir
Translocation
Eksik ya da kırık bir kromozom parçasının başka bir kromozoma bağlanmasıdır
Location of mutation
Cell level
—gametic/germline
—Somatic
Genom level
—intergenic
—intragenic (daha fazla etkiler)
Errors that occur during DNA replication
Proofreading
Failure to repair DNA after damage
Spontaneous chemical process(deamination)
Chemical mutagens
UV, ionizing radiation
Often result in permanent mutation
Deamination
Remove of amino. Group
DNA:Point,Frame-shift
Protein:missense(aa değişir)non-sense(sonlandırma codonuyla bitmesini sağlar)
Missense mutation
Silent mutation (aa değişmez)
Conservative mutation (benzer işlevsel aa)
Non-conservative mutation(işlevsiz aa)
Transition=means substitutions of one purine for the other or one pyrimidine for the other
Transversion means the replacement of purine for pyrimidine
Hotspot mutation
Diğer yerlere göre mutasyona daha duyarlı ve dayanıksız bölgeler
Mutation
Mutation are in non coding sides
Does not effect RNA modification
Are not in the active side of protein
Frame-shift mutation
Çerçeve kayması mutasyonu, bir genin protein kodlayan kısmında ya birkaç baz çiftinin girmesi ya da çıkması ile oluşan mutasyon çeşididir. Bu girme ya da çıkma noktasından itibaren kodonların doğru okuma çerçevesinde bir kayma olur.
Two main mechanism of gene mutation
Replication error
System mutation
—point mutation mostly seen in males
Longer oocytes remain in meiosis 1 the greater the change of disjunction occur
Mutagens
—Ionizing radiation(destroy deoxyribose ring)
Xray/gamma rays/alpha ,beta particles,neurons
—ultraviolet
—high temperature
—varied Ph
Tautomers
Two molecules with same molecular formula but different connectivity
Chemical mutagens
Base analogs:5-BrdU
Nitrous acid(yemek sürecinde etleri korur)//leads to deamination of cytosine and adenin
Alkylating agent//alkylation of guanosine in 6th position
Hydroxylamines//hydroxylate to cytosine after tautomerization cytosine can pair with adenine
Acridine dyes(tripaflavin) can intercalate DNA and give rise to frameshift
Aflatoxin
5-BrdU
When brdu keto form it pairs with adenine.When the replication starts adenine can pair with brdu or thymine.Brdu in the keto form easily binds with adenine.When keto-enol shift occurs it easily binds to guanine.
Polycyclic aromatic hydrocarbons can bind to DNA and lead to errors in replication