MTM Flashcards
What is the plasma membrane?
Lipid bilayer in which proteins are embedded
What is a mitochondrion?
An organelle in which energy is extracted from food during oxidative metabolism
What makes up the cytoskeleton?
Micro tubules- tube of protein molecules
Intermediate filament- provide support and strength
Actin filament- twisted protein fibres responsible for cell movement
What does SER do?
Aids in the manufacture of carbohydrates and lipids
What is RER?
Membranes studded with ribosomes that carry out protein synthesis
What is the extracellular matrix?
Contains a network of macromolecules such as proteins and polysaccharides acts as a scaffold and stabilises the cell.
What does the centre some do?
Produces micro tubules and contains centrioles.
What is a peroxisome?
Filled with enzymes, enclosed in a single membrane and buds off the er. Breaks down lipids and destroys toxic substances via oxidation.
What are vesicles?
Transport of materials between organelles
Golgi apparatus?
Synthesises, packages and modifies molecules ready for secretion from the cell and routes new proteins to the correct compartment
Structure of mitochondria?
Double membrane and their own DNA, inner convoluted membrane forms cristae which increases the surface area for electron transport.
What are endocytosis, pinocytosis and exocytosis?
Endocytosis- the cell engulf large particles
Pinocytosis- eukaryotes ingest plasma mambrane as vesicles, type of endocytosis of soluble substances comes from ECM.
Exocytosis- vesicles fuse with the plasma membrane releasing contents into the external medium.
What are the 3 mechanisms of protein transport into organelles?
Nuclear pores- movement of RNA, proteins and ribosomes into and out of the nucleus.
Protein translocation- protein must unfold to get through the membrane, in the mitochondria, ER and peroxisomes, proteins enter the ER whilst being synthesised.
Transport vesicles- allow for the transport of substances between organelles
What is the role of endoplasmic reticulum?
Serves as an entry point for proteins destined for other organelles including, Golgi, endoscopes, lysosomes and the cell surface, enter er and are ferried in transport vesicles between organelles.
How are water soluble proteins moved?
Translocation across er membrane and released into the lumen
How do prospective cell membrane proteins move?
They partially translocate across the er membrane and become embedded
What is the cytoskeleton?
A system of crossed fine protein filaments either anchored to the plasma membrane or radiating from a central site next to the nucleus
How does the cytoskeleton move organelles?
Uses ATP to propel them along the filaments
What do the types of filaments in the cytoskeleton do?
Actin- thinnest, generate contractile forces, form a mesh beneath the plasma membrane and strengthen it.
Micro tubules- thickest, pull duplicated chromosomes and distribute them equally between daughter cells
Intermediate filaments- mechanically strengthen the cell
What is DNA?
A template, transcribed onto mRNA by RNA polymerase. 3mRNA form a codon corresponding to an amino acid.
What happens to mRNA after it has left the nucleus?
It is translated on a ribosome by tRNA onto a protein. Some of the code is redundant/ regulatory, degenerate means that the same amino acid is coded by different sets of nucleotides.
What is the primary structure of a protein?
Polypeptide chain, the sequence of amino acids. AA are lined by condensation reactions, the structure is flexible and various side chains with different properties such as polarity of hydrophilic/phobic groups determine folding.
Secondary structure
The folding of a primary structure into alpha helicopters or beta pleated sheets. Stabilised by van der waals forces, hydrogen bonds and electrostatic attraction. Alpha helices stabilised by h bonds.
Tertiary structure of a protein?
3D shape of the protein requiring the least energy to form.
Where are the different types of amino acids arranged to?
Non polar on the inside and polar on the outside
What happens when proteins don’t fold correctly?
They form aggregates and accumulate. This prevents their functioning, initiates an immune response which can damage cells and tissues.
What is the quaternary structure?
More than one polypeptide chain. Subunits ore honomers- the same polypeptide chain or heteromers- different
What are disulphides bonds?
Polypeptide chains are stabilised by covalent cross linkages, disulphides is the most common. Those stabilised in this was are transported out of the cell. The formation is catalysed in the er by an enzyme linking cysteine side chains.
What are the functions of fibrous and globular proteins?
Fibrous- collagen or keratin, supportive
Globular- secretory, can be enzymes, haemoglobin
What are the functions of proteins?
Catalysis- enzymes- specificity
Receptors- binding ligands
Switching- signalling pathways telling cell to differentiate and make enzymes
Structural- cytoskeleton element giving cell shape and helping the ,overextended of the organelles
How is the function of a protein regulated?
Synthesis- need signalling protein to produce protein when needed
Localisation- taken to the right cell and organelle
Modification- regulatory protein attached makes it inactive and detached to activate
Degradation- get rid of unnecessary or non functional proteins from inside the cell or store them in vesicles
What is feedback inhibition?
The catalytic activity of enzymes are often regulated by other molecules through feedback inhibition, an enzyme acting early in the pathway is inhibited by a later product
Where are proteins modified and how?
Disulphides bonds reinforce conformation, glycosylation occurs in endoplasmic reticulum. Further modification in the Golgi.
How is the protein conformation dynamic and how is it controlled?
Proteins can open and close depending on their regulation, conformation can shift to suit the function, open conformation is active and closed is inactive. It is controlled by phosphorylation, a phosphate group is covalently attached to amino acid side chains. Phosphorylase by kinase and dephosphorylated by phosphatase
What are the 2 types of secretion?
Constitutive- unregulated, continuous, no external signal required
Regulated- use secretory vesicles, need extracellular signalling
How do proteins get sorted to the correct site?
They have a sorting signal
Membrane structure?
Phospholipid bilayer and transmembrane proteins, prevent the passage of water soluble molecules. Phospholipid has a hydrophobic tail and hydrophilic head.
What does cholesterol do to the membrane?
Makes it more rigid and stabilised proteins for easier communication
Wher are glycol opioids found?
The noncytosolic half of the plasma membrane, form a carbohydrate later and acquire sugar in Golgi apparatus. Important for recognition
What are the types of protein association with the bilayer?
Transmembrane- through the membrane
Membrane associated- inner leaflet of bilayer in the cytosol
Lipid linked- anchored here
Protein attached- attached to integral membrane proteins
Actions of transmembrane proteins?
Receptors- bind ligands Anchors- link to intracellular matrix and actin Transporters- eg. Ion pump Signal transduction molecules Enzymes
Why does polypeptide chain cross the bilayer as an alpha helix?
Because the transmembrane segment has hydrophobic side chains and cannot form favourable interactions with water so hydrophilic polypeptide backbone forms h bonds with itself forming a helix in the absence of water
How do glycoproteins prevent cell damage?
They form a carbohydrate layer preventing chemical and physical damage. Sugars absorb water acting as a lubricant and are used in cell recognition and adhesion.
What is active transport and an example?
Requires energy from the hydrolysis of ATP and substances are moves against their concentration gradient. Sodium pump couples 3 sodium out and 2 potassium in.
Give an example of coupled active transport.
Na+ - glucose symporter.
What are the types of passive transport?
Simple diffusion- along a concentration gradient, no membrane proteins involved and no energy.
Facilitated diffusion- along the concentration gradient and channel proteins or uni porter carrier proteins involved, along a conc grad
What are channel proteins?
Pores which discriminate on size and charge, hydrophilic, allow rapid diffusion, non directional, some selectivity, controlled via gates.
What are carrier proteins?
Highly selective, molecule must bind, needed for small organic molecules such as glucose
Where is the cell cycle needed?
In embryogenesis, involves growth and tissue formation. Needs regulation
What are the signal proteins affecting cell proliferation?
Mitogens- stimulate cell division, overcome intracellular braking mechanisms
Growth factors- stimulate cell growth, promote protein synthesis and other macromolecules
Survival factors- promote cell survival by suppressing apoptosis
Why must the cell cycle be controlled?
To maintain genome integrity and ensure efficient and correct DNA replication, ensure identical daughter cells
What are the 5 phases of the cell cycle?
G0- quiescence, the cell is resting.
G1- the first growth phase, prepares the cell for replication. Cell grows in size, the mRNA and proteins needed are produced.
S- synthesis, copying of chromosomes to form 2 sets of genes connected at the centromere.
G2- second growth phase, increase in the number of organelles so they can be separated in cytokinesis and increase in the amount of cytoplasm
Room some segregation, cell division to form 2 identical cells.
When does proliferation begin?
When the appropriate signal is received
What are the checkpoints?
G1- ensures the cell is large enough to divide and has enough nutrients. If it receives the growth factor signal, cell cycle will continue, if not it will enter G0.
G1/S- a check of DNA to ensure it is not damaged, if damaged, auto lysis will occur.
G2- ensures successful DNA replication
Metaphase- ensures chromosomes are attached to the mitotic spindle correctly by kinetochore
How do cycling and cyclin dependent kinases work?
Fluctuations in the abundance and activity of these molecules pace the events of the cell. Kinases allow move,net through G1 and 2. They are activated by cyclins, the concentration of cyclin in the cell varies and is highest when the growth signal is received.
What types of cdk are there?
G1-CDK, drives through the G1 phase
G1/S CDK and S-CDK into S phase
M CDK to enter mitosis
What are the functions of CDKs?
Regulate the cell cycle checkpoint transitions and are regulated by feedback
How do CDKs work?
Cyclins accumulate during G1, S and G2 phases of the cell cycle and by G2 there is enough M- cyclin to form MCDK allowing the initiation of mitosis.