Microbiology Lecture 1 Flashcards
microbes
- minute creatures
- less than 1/2 a mm in size
- not visible to naked eye
ubiquitous
they are everywhere
- microbes
- they are in air, water, soil, inside us
normal flora
- under normal conditions
- found in the gastrointestinal tract, genitourinary tract, respiratory tract, skin
- made up of microbes that are found in our bodies under normal conditions
benefits of microbes
- protect us from disease by suppressing growth of pathogens (normal flora)
- pathogens do not get enough nutrients bc nutrients are being used up by the normal flora
- E. coli in large intestine makes vitamin K used for blood clotting (part of normal flora)
microbes in aquatic environments
- filled with unicellular algae (bottom of food chain)
- food chain ex. unicellular algae > tiny fish > large fish > sharks
- all the organisms depend on unicellular algae
unicellular algae
- bottom of food chain
- live in aquatic environment
- autotrophs (use CO2 and water to make sugar and release O2 (Photosynthesis)
- 80% of O2 is from unicellular algae
soil microbes
- loaded with microbes
- recycle chemical elements
- decompose dead animals and plants
- breakdown cellulose and release CO2
- broken down cellulose is used by other plants
microbes in food
- used to make things like
- yogurt
- cheese
- bread
- yeast + flour = dough
rising dough
- yeast breaks down sugar in dough to release CO2 -> bubbles get trapped and cause expansion
- causes dough to rise
therapeutic substances
- genetic engineering is used to force E. coli to make human insulin
- utilizing microbes
bioremediation
-microbe are used to clean up chemical pollutants (oil spills) in the environment
insecticide
- BT toxin is sprayed on plants (utilize microbes)
- kills insects
sewage treatment
breakdown organic matter to produce methane
harmful aspects of microbes
- cause disease like tuberculosis & lyme disease
- cause spoilage of food products (microbes break down sugar (lactose) and release acids)
history of microbiology
- 1665- Robert hooke- plant materials (leaves and stems) little boxes called cells (not microbes)
- 1673-1723- anton van leeuwenhoek observe microbes under the microscope
Anton Van Leeuwenhoek
- used rain water, scraping from his teeth to observe
- he saw microbe animalcules (different shapes floating around)
- circular, rod, spiral
spontaneous generation theory
- life could arise from nonliving matter
- ex. decaying meat can give birth to maggots
Francesco Redi
- tried to disprove spontaneous generation theory
- he put decaying meat in open and closed jars
- the closed jars didnt have maggots while the open had maggots
- repeats experiment with fresh air
John Needham
- heated broth and poured into containers -> few days later -> microbes were found in broth
- people believed the broth gave birth to the microbes but the air born microbes contaminated broth
spallanzani
- poured broth and sealed the containers -> then he heat it up -> this killed all the microbes after it was sealed
- no microbes arose
theory of biogenesis
- rudolph virchow
- life could arise only from pre-existing living cells
Disproving spontaneous generation theory
- louis pasteur- father of microbiology
- 1861
- took a flask with a long neck and added broth -> bent the neck of the flask into an S shaped curve leaving the flask open (fresh air) -> heat broth -> microbes did not show up
- microbes got stuck in the curve of the neck like a filter
- successfully disproves the spontaneous generation theory
louis pasteur discoveries
- father of microbiology due to proving the spontaneous generation theory wrong
- microbes are ubiquitous
- foundation for the aseptic procedure used in the lab to prevent contamination
- fermentation -> yeast converted sugars to alcohol and CO2 in absence of O2
- pasteurization -> beverages such as milk are heated enough to kill microbes without destroying the flavor (doesnt kill ALL microbes) -> prevents diseases from spreading from food
germ theory of disease
- belief microbes could cause diseases
- once fermentation was discovered they realized microbes cause changes in the body -> disease
- 1860s- Joseph lister treated surgical wounds with disinfectant
- 1876- robert koch proved germ theory of disease
- animals were dying of disease
Robert Koch- Germ theory of disease
- drew blood from animals that died of disease
- isolated rod shaped bacterium (isolate #1)
- grew that bacteria in lab and obtained pure culture of bacterium
- injected bacterium into healthy animals
- healthy animals soon became sick and died
- isolated rod shaped bacteria in these animals (isolate #2)
- isolate #2 came from experimental animals while #1 came from nature
- isolates were identical proving that is was the cause of the disease
- bacterium was identified to be bacillus anthracis (anthrax)
- steps are known as Kochs postulates - identifies the determinant of a disease
Kochs postulates
- used to determine causative agent of mysterious infectious disease
- isolates bacterium from animals sick in nature
- injects into health animals
- compare the isolates
penicillin
- toxic to bacteria but not human cells
- 1928- alexander fleming
naming organisms
- 1735- carolus linnaeus
- genus and species
- latin
- binomial
- describes the organism or honors a scientist
- underlined or italiced
- capitalize the genus and not the genus
Staphylococcus aureus
- part of the normal flora of the skin
- genus- Staphylococcus (staphylo-cluster, coccus- circular)
- species- aureus (golden brown)
- exists in golden brown circular clusters
Escherichia coli
- E. coli
- genus- Escherichia (honors the scientist)
- species- coli
- normal flora in large intestine
- not all E. coli is good (producing vitamins) -> some are pathogens
diversity of microorganisms
- bacteria- prokaryotic
- pre-nucleus- DNA is NOT surrounded by a membrane (no nucleus)
- unicellular
- heterotroph- get energy from organic molecules
- cells walls made of peptidoglycan
fungi
yeasts and molds
- eukaryotic
- unicellular/multicellular (most multi)
- ALL are heterotrophs
- cells walls are made of chitin
eukaryotic
true nucleus
protozoa
- eukaryotic
- unicellular
- heterotrophs
algae
- eukaryotic
- unicellular/multicellular
- ALL autotrophs- photosynthesize
virus
- acellular
- not made up of cells (no plasma membrane, no organelles, no cytoplasm)
- they do have DNA or RNA
- obligate intracellular parasites (need a host cell to reproduce)
helminths
- worms
- multicellular
- they are not microscopic but their eggs are
- eggs can be observed under a microscope in spit when a person is infected
classification of organisms
- 1969-robert whittaker classifies organisms
- 5 kingdom system
- based on:
- cell type- prokaryotic/eukaryotic
- cellular organization- unicellular/multicellular
- nutritional requirements- photosynthetic/nonphotosynthetic
5 kindgoms
- prokaryotae (monera)- prokaryotic ex. bacteria
- protista- protozoa ex. ameba
- fungi- yeasts and molds
- plant- ferns, trees, flowering plants
- animal- worms, insects, vertebrates
3 domains
- based on ribosomal RNA sequence
- archaea, bacteria, eukarya
archaea
- prokaryotic
- unusual -> extreme environments
- salt lakes
- dead sea
- do not have peptidoglycan cell wall
- cell walls are made of pseudomurein
bacteria domain
- prokaryotic
- normal flora
- pathogens
- most organisms have peptidoglycan cell walls
eukarya domain
- all the eukaryotic organisms
- protozoa
- fungi
- plants
- animals
measurement of microbes
- units- micrometers
- 1000micrometers=1mm
- length of bacteria- 2 um to 7 um
- diameter of bacteria- .2um to 2 um
bright field microscope
- common
- field is bright (background)
- cells are darker than the background
- stain the cells (may cause damage)
- aka- compound microscope
- object is magnified by two separate lenses -> ocular and objective
- total magnification
- resolving power is .2um
total magnification
magnification by the objective lens X magnification by the ocular lens (10x)
resolving power
- resolution
- clarity/sharpness of image
oil immersion
- improves the resolving power
- 100x lens aka oil immersion objective lens
- add a drop of oil immersion on the slide before 100x
- light bends away from the objective lens in the absence of oil immersion
- oil immersion causes most of the light to go through the objective lens
dark field microscope
- cells are not stained
- if you do not want the cells to be damaged use this
- field is dark but object is bright
Treponema pallidum
- spirochete
- causes syphilis
- destroyed by staining
- must use dark field microscope
phase contrast microscope
- no staining
- used to see internal structures: organelles, endospores (bright oval structure)
fluorescent microscope
- UV is light is used to illuminate the object
- cells are stained with fluorescent dyes
- Auramine O is used to stain Mycobacterium tuberculosis
- cells show up as glowing yellow objects against dark background
electron microscope
- transmission electron microscope (TEM)
- scanning electron microscope (SEM)
- beam of electron is used in place of light
- cells are stained
transmission electron microscope (TEM)
- thin sections of the specimen are obtained and placed on a copper mesh grid
- magnifies object 10,000X to 100,000X
- resolving power of .0025um
- used to observe internal structures
scanning electron microscope (SEM)
- used to observe structures found on the surface of microbes ex. flagella
- magnifies the object 1000x to 10,000X
- resolving power or .02um
staining
- dyes are salts
- used for bright field microscope
- positive and negative ions: either basic or acidic
- bacterial cell is negatively charged (its attracted to positive ion) -> ionic bond is formed between the cell and the stain
- therefore basic dyes are used to stain bacterial cells
basic dye
positive ion has the color
- methylene blue chloride
- used to stain the cell
acidic dye
- negative ion has the color
- sodium eosinate
- negative cells are repelled by negative ions -> this stains the background