FINAL review Flashcards
5 kingdoms
prokaryotae- prokaryotic organisms (bacteria)
- protista- eukaryotic, unicellular (amoeba)
- fungi- eukaryotic- yeast and mold
- plants- all plants- conifers, flowering plants
- animals- all animals, insects, worms, vertebrates
domain
- based on RNA
- bacteria- peptidoglycan
- archaea- prokaryotic
- eukaryotes- protista, fungi, plant, animal
virus
- acellular
- no cytoplasm, no organelles, no plasma membrane
- either have RNA or DNA
- surrounded by a protein coat (capsid)
- some viruses have an envelope around capsid- proteins, carbohydrates, lipids
- envelope has spikes made up of protein or glycoprotein
- obligate intracellular parasites -> need host to reproduce
bacteriophage
- complex virus
- has a capsid
- DNA is within the capsid
- capsid and tail fibers are attached to the sheath
retrovirus
- RNA- genetic material
- has the enzyme reverse transcriptase
- reverse transcriptase- uses RNA as a template to make a complementary strand of DNA
- capsid and envelope
- ex. human immunodeficiency virus (HIV)
benefits of microbes
- protect us from disease by suppressing growth of pathogens (normal flora)
- pathogens do not get enough nutrients bc nutrients are being used up by the normal flora
- E. coli in large intestine makes vitamin K used for blood clotting (part of normal flora)
history of microbiology
- 1665- Robert hooke- plant materials (leaves and stems) little boxes called cells (not microbes)
- 1673-1723- anton van leeuwenhoek observe microbes under the microscope
Disproving spontaneous generation theory
- louis pasteur- father of microbiology
- 1861
- took a flask with a long neck and added broth -> bent the neck of the flask into an S shaped curve leaving the flask open (fresh air) -> heat broth -> microbes did not show up
- microbes got stuck in the curve of the neck like a filter
- successfully disproves the spontaneous generation theory
louis pasteur
- father of microbiology due to proving the spontaneous generation theory wrong
- microbes are ubiquitous
- foundation for the aseptic procedure used in the lab to prevent contamination
- fermentation -> yeast converted sugars to alcohol and CO2 in absence of O2
- pasteurization -> beverages such as milk are heated enough to kill microbes without destroying the flavor (doesnt kill ALL microbes) -> prevents diseases from spreading from food
Robert Koch
- proved germ theory of disease
- drew blood from animals that died of disease
- isolated rod shaped bacterium (isolate #1)
- grew that bacteria in lab and obtained pure culture of bacterium
- injected bacterium into healthy animals
- healthy animals soon became sick and died
- isolated rod shaped bacteria in these animals (isolate #2)
- isolate #2 came from experimental animals while #1 came from nature
- isolates were identical proving that is was the cause of the disease
- bacterium was identified to be bacillus anthracis (anthrax)
- steps are known as Kochs postulates - identifies the determinant of a disease
fungi
yeasts and molds
- eukaryotic
- unicellular/multicellular (most multi)
- ALL are heterotrophs
- cells walls are made of chitin
- sexually reproduce
- asexual spores
protozoa
- eukaryotic
- unicellular
- heterotrophs
- 2 stages:
- trophozoites- active, inside host
- cyst- dormant, outside host
algae
- eukaryotic
- multicellular
- ALL autotrophs- photosynthesize
robert whittaker
classifies organisms
- 5 kingdom system
- based on:
- cell type- prokaryotic/eukaryotic
- cellular organization- unicellular/multicellular
- nutritional requirements- photosynthetic/nonphotosynthetic
dark field microscope
- cells are not stained
- if you do not want the cells to be damaged use this
- field is dark but object is bright
phase contrast microscope
- no staining
- used to see internal structures: organelles, endospores (bright oval structure)
fluorescent microscope
- UV is light is used to illuminate the object
- cells are stained with fluorescent dyes
- Auramine O is used to stain Mycobacterium tuberculosis
- cells show up as glowing yellow objects against dark background
electron microscope
- transmission electron microscope (TEM)- internal
- scanning electron microscope (SEM)- surface
- beam of electron is used in place of light
- cells are stained
basic dyes
- bacteria are negatively charged
- basic dyes are positive -> stain bacteria
- ionic bond is formed between cell and stain
- dyes are salts
- color
- methylene blue chloride
acidic dye
- negative charge
- stain background
- sodium eosinate
- nigrosin
gram staining
- first add crystal violet as a primary stain to bacterial specimen -> this stains both + and - cells purple or blue
- iodine, a mordant (strengthens the ionic bond btwn the bacterial cell and crystal violet), makes dye less soluble so it adheres to cell walls -> both + or - remain purple or blue
- acetone-alcohol (decolorizer) washed stain away from gram neg -> gram - cells become colorless while gram + remain purple or blue (differentiation step)
- Safranin (basic counterstain) allows dye adherance to gram-negative cells -> gram - cells turn pink while gram + remain purple or blue
- gram neg -> pink
- gram pos -> purple
acid fast staining
- differential staining
- two genera are acid fast:
- myobacterium and nocardia
- they have waxy substance known as mycolic acid (complex lipid) in their cell walls
- acid fast staining is used to identify these two bacterium (used for tuberculosis)
- carbolfuchsin- primary stain
- acid-alcohol- decolorizer
- methylene blue- counterstain
- acid-fast= red
- nonacid-fast=blue
- both start out red due to primary stain -> decolorizer -> nonacid-fast loses color -> counterstain -> nonacid-fast turns blue -> acid-fast stays red
gram neg vs pos
- gram positive is thick (peptidoglycan)
- gram neg is thinner (only one or two layers of peptidoglycan
capsule staining
- capsule is a gelatinous substance found around the cell wall
- cannot be stained
- not all bacteria has capsule
- stain the background using nigrosin
- stain the cell body with crystal violet
- background is black
- capsule shows up as a clear ring around the stained cell
- capsule is not being stained
endospores
- 2 genera of bacteria that make endospores are bacillus and clostridium
- endospores are resistant to hostile environmental conditions (heat, UV light, disinfectant, desiccation)
- dormant stage of the cell allows to avoid harsh environment and death
- endospores are formed within the vegetative cell (active cell)
- once formation is complete, endospores are released into environment
- vegetative cells make endospores when the environment lacks nutrients
endospore staining
- malachite green- primary stain
- water- decolorizer
- safranin- counterstain
- endospores=green
- vegetative cells=pink
- both vegetative and endospores pick up primary stain -> both turn green -> water decolorizes vegetative cells -> vegetative cells pick up counterstain (safranin) and turn pink -> endospores remain green
nucleosomes
- segments of DNA are wrapped around histone proteins
- these are packages
- move through the nuclear pores
- DNA + histone = nucleosome
ribosomes
- free in the cytoplasm
- show up as dots in a micrograph
- attached to rough ER
- made up of 2 subunits
- each subunit is made up of proteins and ribosomal RNA
- eukaryotic cells has 80s ribosome
- larger and denser than prokaryotic ribosomes (which is 70s)
- prokaryotes and eukaryotes
helminths
- worms
- multicellular
- eukaryotic
- animal kingdom
- do not have a well developed nervous system or digestive system
- they do have a complex reproductive system
- platyhelminthes (flatworms) and nematodes (round worms)
platyhelminthes
- trematodes (flukes)
- cestodes (tapeworms)- segmented, scolex
- hermaphroditic
taenia solium
- tapeworm
- eggs and larvae are infectious
- neurocysticercosis
nematodes
- roundworms
- dioecious- male and female
giardia lamblia
- flagella
- 2 nuclei
- contaminated food and water
- weight loss
- wilderness water
balantidium coli
- cilia
- paramecium
- 2 nuclei
- macronucleus- protein synthesis
- micronucleus- transmit genetic information
hemoflagellates
- long, slender
- flagellum
- 1 nucleus
- no cyst phase -> only trohphozite
- ex. trypanoasoma gambiense (africian sleeping sickness)
- ex. trypanosoma cruzi (chagas disease)
yeast
- unicellular
- oval or circular in shape
- many reproduce by budding
- sometimes the buds fail to separate from the parent -> pseudohyphae are formed
- Candida albicans make pseudohyphae (part of the normal flora of intestinal tract of humans)