Lecture 3 Flashcards
taxonomy
- science of classification
- robert whittaker came up with the 5 kingdom system
kingdom
- based on cell type: prokaryotic or eukaryotic
- cellular organization- unicellular/multicellular
- nutritional requirements- photosynthetic/nonphotosynthetic
- created by robert whittaker
5 kingdoms
prokaryotae- prokaryotic organisms (bacteria)
- protista- eukaryotic, unicellular (amoeba)
- fungi- eukaryotic- yeast and mold
- plants- all plants- conifers, flowering plants
- animals- all animals, insects, worms, vertebrates
domain
- based on ribosomal RNA sequence
- *bacteria
- *archaea
- *eukarya
bacteria domain
- normal flora
- pathogens
- have peptidoglycan cell wall
archaea domain
- prokaryotic
- unusual organisms
- extreme environment- hot springs, dead sea, salt lakes
- cell walls are made of pseudomurein
- ex. sulfolobus
- 3 groups: halophiles, thermophiles, methanogens
eukarya domain
- protista
- fungi
- plant
- animal
archaea domain: halophiles
-
- need high concentration of salt
- at least 30%
- ex. halobacterium (not a bacterium)
- live in salt lakes, dead sea
archaea domain: thermophiles
- ex. sulfolobus
- lives in sulfur rich hot springs
- temperature 70 degree C
- pH=2
- thermophile and acidophile
archaea domain: methanogens
- lives in swamps
- break down organic matter to make methane
- ex. methanobacterium (not a bacterium)
classification of bacteria
- Bergey’s manual of systemic bacteriology has a classification scheme of evolutionary relationship among bacteria which is based on RNA sequence of bacteria
- species is defined as a group of organisms with similar characteristics when it comes to bacteria
- species of bacteria are subdivided into strains (subspecies)
- subspecies have organisms within the species with slightly different characteristics
- E. coli O157:H7 is a subspecies of E. coli that is found in the intestinal tract of cattle (normal flora) but is a pathogen for humans (bc of toxins it produces)
- transmitted in undercooked hamburgers
- causes bloody diarrhea (dysentery)
- different subspecies can be harmful while others not
Bergey’s manual of determinative bacteriology
- has identification scheme for bacteria
- based on cell shape, gram reaction, and biochemical testing
- we look for enzyme activity
- urea -> urease -> ammonium ions
serology
- diagnose infections, find enzyme activity
- antigen and antibody rxns in vitro (in tube, slide)
- antigen- foreign substance, non-self (ex. bacteria)
- immune system makes antibodies -> proteins
- antibodies bind to the antigen that stimulated their production and cause the antigen to agglutinate (clump)
- antibody is specific for the antigen that stimulated its production
- helps identify unknown bacteria, viruses and diagnose infections
serology procedure
- bacteria are injected into a rabbit
- rabbits immune system makes antibodies
- they are released into the blood
- draw the blood and separate the serum
- that serum has the specific antibodies for that microbe
slide agglutination test
- example of serological test
- 2 unknown bacteria -> we want to know if they are salmonella
- take a slide
- place a drop of unknown 1 on the end of one side of the slide and the other unknown on the other side
- place a drop of salmonella antiserum -> has antibodies against salmonella
- look for agglutination
- positive slide- the side with clumping is salmonella -> antibodies caused clumping bc it was specific to salmonella (vice versa)
- takes a few minutes
rickettsias
- gram negative
- coccobacillus
- *obligate intracellular parasites -> bacteria has to get into the host cell to reproduce (uncommon)
- transmitted by insects such as ticks
obligate intracellular parasites
- need a host cell in order to reproduce (uncommon)
- rickettsia rickettsii
- rocky mountain spotted fever
- southeastern parts of the country
- transmitted by ticks
- rash on palms and soles
- treated during the early stages of the disease
- can cause damage to the kidneys
caulobacter
- aquatic environments
- *has a stalk
- uses stalk to attach
- attaches to algae and absorbs nutrients
Rhizobium
- roots of plants beans and peas
- beneficial bacteria
- *converts nitrogen gas to ammonium ions -> nitrogen fixation
- ammonium ions are used by the plants to make protein
- beneficial to plants
- plants use ammonia to make proteins
- indirectly beneficial to humans and animals -> we eat the plants/cattle
Neisseria gonorrhoeae
- pathogen
- gonorrhea- STD
- gram negative
- diplococci
- uses fimbriae to attach itself to the mucus membrane -> causes damage
- painful urination, discharge of pus
- if not treated -> pelvic inflammatory disease -> sterility
- treated with cephalosporin and doxycycilne
- also causes ophthalmia neonatorum -> eye infection of the newborn (picks up bacteria during birth)
- leads to blindness, antibiotics are placed in the eyes as prophylaxis
neisseria meningitidis
- also is gram neg, diplococci, fimbriae
- some people are asymptomatic carriers
- have the organisms in their throat
- transmits bacteria in the aerosol (air)
- meningitis -> throat infection
bordetella pertussis
- gram negative
- coccobacillus
- whooping cough
- grows on cilia lining the trachea
- accumulation of mucous -> cough
- DTP vaccine -> pertussis vaccine (dead)
- heat killed bacteria
thiobacillus
- *chemoautotroph -> doesnt get energy from glucose
- gets energy from hydrogen sulfide
- found in soil
- gram negative
- rod shaped (bacillus)
pseudomonas aeruginosa
- gram negative
- rod shaped
- opportunist -> causes problems when someones immune system is weak
- *makes a water soluble pigment (blue-green)
- causes skin infection if the skin is damaged (burn victims are vulnerable)
- burn and wound infections
- gentamicin, polymyxin
escherichia coli
- gram negative
- bacilli
- normal flora of the intestinal tract
- opportunist (attacks in the intestinal tract when immune system is weak)
- makes vitamin K otherwise
- strain O157:H7 -> in the intestinal tract cattle -> pathogenic for humans
- bloody diarrhea
salmonella typhi
- gram negative
- rod shaped
- causes typhoid fever
- found only in humans
- carriers have the bacteria in the gallbladder
- transmitted to other in contaminated food or water in poor sanitary practices
- fluoroquinilones, chloramphenicol
salmonella enteritidis
- causes salmonellosis
- associated with chicken and cattle
- transmitted through undercooked contaminated food
- causes fever, abdominal pain, diarrhea
- fluid and electrolyte therapy -> then use antibiotics
- cooking the meat thoroughly can avoid this
- type of food poisoning
opportunists
- klebsiella pneumoniae- normal flora
- proteus vulgaris
- enterobacter
- serratia marcescens- found in soil
- that all have endotoxin- lipid A
- if the endotoxin is released it causes septic shock
- nosocomial infections- from the hospital (due to weakened immune system)
- septic shock, pneumonia, urinary tract infections
- all gram negative
yersinia pestis
- gram negative
- rod shape
- causes plague
- very deadly and contagious
- fleas from rats
- southwestern- transmission from squirrels, chipmunks
- transmitted with direct contact
- proliferate in the blood stream
- causes buboes (swelling of lymph nodes) -> bubonic plague
- mortality- 50 to 75%
- streptomycin and tetracycline- prophylaxis -> treatment
- pneumonic plague- if bacteria ends up in lungs -> spread through aerosol -> mortality rate is 100%
vibrio cholerae
- gram negative
- bent rod shape
- single flagellum
- transmitted in contaminated water
- bacteria goes into intestine and produces a toxin -> cholera
- causes cholera
- cholera toxins attaches to cells lining the intestine -> stimulates the cells to release water and electrolytes
- profuse and watery diarrhea
- rice water stools -> mucus, epithelia cells, bacteria
- can recover without antibiotics
chromatium*
- gram negative
- rod shape
- lives in lakes and pounds
- *anoxygenic photosynthesis
- it doesnt make O2 it makes sulfur in place of O bc it uses hydrogen sulfide in place of H2O
- hydrogen sulfide + CO2 -> sugar and sulfur
- typically plants/algae carry out -> water + CO2 -> sugar + O2
- anoxygenic photosynthesis
bdellovibrio
- gram negative
- bent rod shape
- flagellum
- lives in soil
- *pathogenic to bacteria like e. coli
- goes into the periplasmic space of e. coli-> between outer and plasma membrane
- reproduces there
- uses up nutrients for e. coli
desulfovibrio*
- sediments of lake and ponds
- *anaerobic respiration
- sulfur is the final electron acceptor -> inorganic
- bent rod
- gram negative
cyanobacteria
- gram negative
- *carries on photosynthesis
- aquatic environments
- heterocysts- converts nitrogen to ammonium ions -> nitrogen fixation
- uses CO2 and water to make glucose and O2
- add oxygen and ammonium ions to atmosphere
chlamydia
- gram negative
- *obligate intracellular parasite -> must go into host cell to reproduce
- two stages:
- elementary body- usually extracellular, dormant
- reticulate body- intracellular, active
- elementary body (outside host) comes in contact with eukaryotic cell -> goes into cytoplasm -> becomes reticulate body -> reproduces -> transforms back to elementary -> host cell breaks down -> reticulates are released
chlamydia trachomatis
- spread through sexual contact
- most common STD
- causes urethritis
- treated by doxycycline
chlamydia trachomatis
- common in the tropics, southwestern USA
- spread through direct contact, flies, towels
- causes eye infection, scarring of cornea
- blindness
- treated with tetracycline
chlamydia trachomatis
- causes lymphogranuloma venereum- STD
- tropic, southeastern USA
- grows in the lymphatic system
- causes obstruction of lymph vessels
- treated with doxycycline
spirochetes
- spiral shaped, axial filaments (movement)
- treponema pallidum- syphilis
treponema pallidum*
- spirochetes
- syphilis
- STD
- primary stage- ulcer at site of inoculation
- secondary stage- bloodstream, rash on the skin and mucous membrane
- if secondary stage isnt treated -> no symptoms
- tertiary syphilis -> blindness, insanity, heart problems (no treatment)
- congenital syphilis- from the mother to fetus -> stillbirth
borrelia burgdorferi
- spirochete
- causes lyme disease
- transmitted by ticks from field mice
- *rash at the bite site -> bulls eye rash
- flu like symptoms
- paralysis, heart problems
- arthritis